Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0004230 | OGI:12008250 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:3153964-3155283 | ||||||||
| Gene Symbol | OsUPS, UPS, OsPUB41, PUB41, OsPUB37 | ||||||||||
| DNA seq | atggagatggagtacggcacgccgcagcatttcatgtgcccgatctcgctgcagccgatgcaggatcccgtcacctcccccaccggcatctcctacgaccgccgcgccatccaccgctggctcgccgccggccactcctcctgccccgtcaccggccgccccctctccctctccgacctcacccccaacctcaccctccgccgcctcatccactcttggcaccactccactactacgccatttcccgtcgagcgttcgacgccgtcgccgccgccgcttcgggaggttgacgacgacgacgtcgtggagaggctggtgatggagatggagggtggtggtggtggttcttggtgccccccgtcgtgtgacttgctccgcgaggcggcggcggtcgcggcggggagcggcgtcgcgcggaggcgcatggtgggcgccggcgtgctccgccgcgtgctgcgtttggtggtgtggtgtggcgggagggggtcgtcgtcgggtgaggcggcggtgatggtggagatgtttgatgcgtgcctcgctctcttccacgcgctcgacgtctccgccgacgagctccgcccgctcgtcgccgacggccacgacctcgtcgacgcggtgacgcgcgtgatggcgacactcgaggccggcgacgcgaacgcgacgagggcgagggagagcgcggtgcggctgctggaggccgtgacggaggccgccgacgcgccggtcctggagcggctgagcccggagttcttcgccgccgcgacggccgtggtgcgcgactgcggcgccgtgtccccgggcgcggcgcgcgcggcggtgcgggcgctggcgaacgcgtgccgcgcccgcgcgagcggcgcctgcaggaaccgcgcgctcgccgtggacgccggggcggcgcgcgaggccatcgagctggagctcgacgcgtggtcgtcgccgcaggccccgggggggcggcgcgccacggaggccgtgatggcgctgctggcggagctgtgcgcttgcgcggaggggcgcgcggcggtggcgtcgcacccggcggggatcgcggtggtggcgaggcgggtgctgcgcgtgtcggccgccgccgacgcgtgcgccgtgcgcgtgctggcggccgtggcggggcgggcggcgtcgccggaggtgcttcgcgagatggcgcgcgtcggcgccgtcgggaagctgtgctgcgtgctgcaggcggagtgcgacgccggcgtgaaggaggcggcgagggcggtgctgaggatgcactccggcgtgtggagcggatcgccatgtgtcagcgcttacctgctgtctcgctacctctaa
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| CDS seq | atggagatggagtacggcacgccgcagcatttcatgtgcccgatctcgctgcagccgatgcaggatcccgtcacctcccccaccggcatctcctacgaccgccgcgccatccaccgctggctcgccgccggccactcctcctgccccgtcaccggccgccccctctccctctccgacctcacccccaacctcaccctccgccgcctcatccactcttggcaccactccactactacgccatttcccgtcgagcgttcgacgccgtcgccgccgccgcttcgggaggttgacgacgacgacgtcgtggagaggctggtgatggagatggagggtggtggtggtggttcttggtgccccccgtcgtgtgacttgctccgcgaggcggcggcggtcgcggcggggagcggcgtcgcgcggaggcgcatggtgggcgccggcgtgctccgccgcgtgctgcgtttggtggtgtggtgtggcgggagggggtcgtcgtcgggtgaggcggcggtgatggtggagatgtttgatgcgtgcctcgctctcttccacgcgctcgacgtctccgccgacgagctccgcccgctcgtcgccgacggccacgacctcgtcgacgcggtgacgcgcgtgatggcgacactcgaggccggcgacgcgaacgcgacgagggcgagggagagcgcggtgcggctgctggaggccgtgacggaggccgccgacgcgccggtcctggagcggctgagcccggagttcttcgccgccgcgacggccgtggtgcgcgactgcggcgccgtgtccccgggcgcggcgcgcgcggcggtgcgggcgctggcgaacgcgtgccgcgcccgcgcgagcggcgcctgcaggaaccgcgcgctcgccgtggacgccggggcggcgcgcgaggccatcgagctggagctcgacgcgtggtcgtcgccgcaggccccgggggggcggcgcgccacggaggccgtgatggcgctgctggcggagctgtgcgcttgcgcggaggggcgcgcggcggtggcgtcgcacccggcggggatcgcggtggtggcgaggcgggtgctgcgcgtgtcggccgccgccgacgcgtgcgccgtgcgcgtgctggcggccgtggcggggcgggcggcgtcgccggaggtgcttcgcgagatggcgcgcgtcggcgccgtcgggaagctgtgctgcgtgctgcaggcggagtgcgacgccggcgtgaaggaggcggcgagggcggtgctgaggatgcactccggcgtgtggagcggatcgccatgtgtcagcgcttacctgctgtctcgctacctctaa
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| Protein seq | MEMEYGTPQHFMCPISLQPMQDPVTSPTGISYDRRAIHRWLAAGHSSCPVTGRPLSLSDLTPNLTLRRLIHSWHHSTTTPFPVERSTPSPPPLREVDDDDVVERLVMEMEGGGGGSWCPPSCDLLREAAAVAAGSGVARRRMVGAGVLRRVLRLVVWCGGRGSSSGEAAVMVEMFDACLALFHALDVSADELRPLVADGHDLVDAVTRVMATLEAGDANATRARESAVRLLEAVTEAADAPVLERLSPEFFAAATAVVRDCGAVSPGAARAAVRALANACRARASGACRNRALAVDAGAAREAIELELDAWSSPQAPGGRRATEAVMALLAELCACAEGRAAVASHPAGIAVVARRVLRVSAAADACAVRVLAAVAGRAASPEVLREMARVGAVGKLCCVLQAECDAGVKEAARAVLRMHSGVWSGSPCVSAYLLSRYL |
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| Function | E3 ubiquitin-protein ligase PUB24 [UniProtKB/Swiss-Prot:Q9SF15] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0004230 | OsLaMu_12g0004230.01 | Chr12 | 3153964 | 3155283 | + | NAM | ||
| CDS seq | atggagatggagtacggcacgccgcagcatttcatgtgcccgatctcgctgcagccgatgcaggatcccgtcacctcccccaccggcatctcctacgaccgccgcgccatccaccgctggctcgccgccggccactcctcctgccccgtcaccggccgccccctctccctctccgacctcacccccaacctcaccctccgccgcctcatccactcttggcaccactccactactacgccatttcccgtcgagcgttcgacgccgtcgccgccgccgcttcgggaggttgacgacgacgacgtcgtggagaggctggtgatggagatggagggtggtggtggtggttcttggtgccccccgtcgtgtgacttgctccgcgaggcggcggcggtcgcggcggggagcggcgtcgcgcggaggcgcatggtgggcgccggcgtgctccgccgcgtgctgcgtttggtggtgtggtgtggcgggagggggtcgtcgtcgggtgaggcggcggtgatggtggagatgtttgatgcgtgcctcgctctcttccacgcgctcgacgtctccgccgacgagctccgcccgctcgtcgccgacggccacgacctcgtcgacgcggtgacgcgcgtgatggcgacactcgaggccggcgacgcgaacgcgacgagggcgagggagagcgcggtgcggctgctggaggccgtgacggaggccgccgacgcgccggtcctggagcggctgagcccggagttcttcgccgccgcgacggccgtggtgcgcgactgcggcgccgtgtccccgggcgcggcgcgcgcggcggtgcgggcgctggcgaacgcgtgccgcgcccgcgcgagcggcgcctgcaggaaccgcgcgctcgccgtggacgccggggcggcgcgcgaggccatcgagctggagctcgacgcgtggtcgtcgccgcaggccccgggggggcggcgcgccacggaggccgtgatggcgctgctggcggagctgtgcgcttgcgcggaggggcgcgcggcggtggcgtcgcacccggcggggatcgcggtggtggcgaggcgggtgctgcgcgtgtcggccgccgccgacgcgtgcgccgtgcgcgtgctggcggccgtggcggggcgggcggcgtcgccggaggtgcttcgcgagatggcgcgcgtcggcgccgtcgggaagctgtgctgcgtgctgcaggcggagtgcgacgccggcgtgaaggaggcggcgagggcggtgctgaggatgcactccggcgtgtggagcggatcgccatgtgtcagcgcttacctgctgtctcgctacctctaa
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| Protein seq | MEMEYGTPQHFMCPISLQPMQDPVTSPTGISYDRRAIHRWLAAGHSSCPVTGRPLSLSDLTPNLTLRRLIHSWHHSTTTPFPVERSTPSPPPLREVDDDDVVERLVMEMEGGGGGSWCPPSCDLLREAAAVAAGSGVARRRMVGAGVLRRVLRLVVWCGGRGSSSGEAAVMVEMFDACLALFHALDVSADELRPLVADGHDLVDAVTRVMATLEAGDANATRARESAVRLLEAVTEAADAPVLERLSPEFFAAATAVVRDCGAVSPGAARAAVRALANACRARASGACRNRALAVDAGAAREAIELELDAWSSPQAPGGRRATEAVMALLAELCACAEGRAAVASHPAGIAVVARRVLRVSAAADACAVRVLAAVAGRAASPEVLREMARVGAVGKLCCVLQAECDAGVKEAARAVLRMHSGVWSGSPCVSAYLLSRYL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0161100 | RBH | 0.184818 | 0.946419 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g06410 | RBH | 0.125649 | 0.637391 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0161100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0004080 | RBH | 0.144909 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0004320 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004320 | RBH | 0.298902 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0004150 | RBH | 0.0 | 0.041120 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004340 | RBH | 0.0 | 2.356121 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0053000 | RBH | 0.6301405 | 0.518538 | 4.1159095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0004330 | RBH | 0.073300 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0057500 | RBH | 0.807656 | 2.5741465 | 0.4090455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0004110 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0004330 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0004340 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0004290 | RBH | 0.039107 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G004160 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0004370 | RBH | 0.0 | 0.000000 | 0.0 |
