Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0001820 | OGI:11003420 | 11/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:1318976-1327624 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggtcagcactgacgagtcgagcactacatctctcgtccaacgccaaactctctctctctctctctctctctctctctgcagatagataggtagatccgatcgcggcgaggaagaagatcgatgagtcggatacacccttcgtatcaacgccaagatgccgccgccgccgccgccgcctcaacggcagcgccgcgagcggcggtgtacacggtgtggaagaggtccagcatggggttccagggcaccgacggcttctccgtctacgacgacgccggcagcctcgccttccgtgttgacaactactcgcgccgccacaagctcttctccggcgacctgctgctcatggatggacatggctcgcctctcctcgccctcaccccacaggtacacttgtctctgatcttctagtcattcatgattcatccactgcaaaaatcttgcatttgcatctcagattaattaattaattaattaattacctcctataggctatattcatgcatctgtctttgtgattgtatactagtattacctaacacctgacaatcagtataatatttacgtacggtttcggtcgatatattgagttagctattagcattcatgaacgatcgtcgatcgatcatcaattcttcatacattcaaccagcaatcgtttatattctgctcgtcaatcatcctcatccgaatgtagacttcattttacatatcttctctcaagatatagaacgatcaccaagtttgcttccaaaacttcactgaagacttctaaatactgcaaatcctgctttgccgagagccccgagactagtgtttcgtccatctacccgatctttcatcttctcgattttttttaaaaaatgtatctccaggctttcactgtttcctcaaaatattcaccaaatcacaagtatatatgtttgtcttgtctatttgtctcacagatactaaaagataccatagctcaccaaaaagattttaaggcaaattatcatgcatgccgacggtttttaggcaaatgctatcaactacctccactaatacatctagctaggaaaataattagtctaaacacttgcagacaaaatcagctgaccaaagattaaaatgcattgctttcatcgttccagcctcggttattttgatgctgttctgctttaatttgcccaaaatcccatacagagttaaaaacaaaacttaaaaaatggagaagttacatacagagtttgatttatccgctagttcattctactttccgactgaagttcttttacctcttgttacaagtgcagcagatgggccaaaagaacagaaaccattaatagaacccatggggagtaagtaagaactaagatttttattttcctttctgctgttgcaacagattatcagcatgcatgaccaatggaattgttacagagcgtcagaagaaggccaaggcaagaggacaagatcacaacaactcttctcaatgagaaaatgctcagttatgcaaagcagtcatgaagcagaagtgcacatgtcaggatgtacccatgcgtcgtcagatcgtactggccatgttcccgccttctcaatcgagggcagtttcaagagaagaagctgcaagatccgcaacagcggcggtgaggaggtcgcaaggataacaaggaagaaagctggagcagcatcattgtcactgactcttgctgaagatgttttcagtcttgaggtccaaccgaatgtagattgtgcgatgatcatggctttcgtcattgttctggatcggatctgctggaagccatacacacctatgatctgttcttcatagttcaaggtgatgagctctatttgacatgtaggaaatagatgtttcaattcaagtgaaatcgacgaattaactcaagaagctagtatgagactgtagtcactaattgtactgtcgattgactgggactaacataacatgtaacttgttctaaatttgactacttatgaaaggaagatcgaattagcagattgaatcaaaatctcttgcttcctcctactgcaacttgaaatgtatgtttcttttcccatgtggttctttcaatccacttgttaccaactgtgagctgttaccaactgtttgggcagtatcattttaatgctatccacctagaagcaccataagaacaaagcactattcatgcccaggacaatgcaaaggacaaaagtgaccaaagtttgttgaatcctaaaagagaaatgctcaaaataatagaatcaagatataagcaatgacttcagctacctttagcagtataaagcaagttgggtatactcacactgaagaagaggcaaaactagtgtcctccacgaagagagagccggagaaggagatggtgggtatccatgcttacgtgttactcaatttcttcaaaccagcacttcgtgtttcatttgcattgtacttgtgcttaagatttgcagtccctctcagaaagattcgaaagatattgacaatatactgcaataagacagcgttagtttactaagaaagttttgtttataccaaatattagaacaataaatagtatggacaaatcccaaggaatattacaaacaacttatttgtcttatactcaccagtctttatttatttaagccacttttgatttgtttgctagatgcataaacaaacaaagcatgaaagcaatatggtaataacacatatatatggttattaatacggagttgacagaaggaataaaatggtttctcatcagcaaggaacaacttaacagctaagtatacaaattgaaattaatagtttgaacaaggtggaacaaattttagcaactctgcagaaatcattgtttgacttttgcaaaatctaagtcttctatctaacttctgatcactaaagacggaaccgagacaaaaaagttaaggatgaacggaaggcccattggtatattcacaagttcacataatgcattctggaagcgacatgcacaggatacagcctaagtagaatgaaagaggaacccagtagatatattgctgaatacggggagactgaaactagtgcagtacaccgatacatccgaatattgtagaattatgtcaaaattctagtgtaattccttatatttgtgggcagtgtcacaggtgggctgccaacatgtatgaattacaaaagagttattctatacttaaggactctgtttcttaatttacatataaagtagaatgaaatgtcaccatttagagaaaatcccctgtgtacccttgaaagttcacctaatcccttctgtacccctgaattttgctcaatcccttacatacccctgaattttagtttggatctcttccatgccctttccgctagttgaccgttagatgaccgttaaattcttatgaaaaagtccattttgccctttggtataaagaagcatataaattaatagagtatattgttttagcatagaaatttgttatatgagactattatgtttatgagatagttatgcaccatattatttgcgataaatatacttttagatatgacataaaaaattaatacttatttattagttattaaaagatttttttagcatatgtgttctgaagtaataaacaaatctgttgtattactatgaaaacacatatgctacataaaagaacttttaataactaataataaataagtatcaactttttatatcatatgtaaaagtaaatttgtcacaaataatatggtgcatcacatactcataaatataatagtcccatccaataaatttttacattccaacaatatacttcattaatttattatgtttcttcatagcaaagggcaaaatggactttttcaaaagaatttaacggtcaactaacggtcaactagcggaaagggcatggaagggatccaaactaaaattcaggggtatgtaagggattgagcaaaattcaggggtatagaagggattaggtgaactttcatgggtacataggggattttctccaccatttaagggttcctttggaagacagaaactattcaggaactttacatgaagcaattcatttcccgcatggatcaggaaataaagtcccatgttgcagtggtcatctcaacaaaaaaaaatccataatacctcgtattatacccccaaaagctacataaacagtactgacacagcttttactcatatgcattatattctgacatgatatatttcagatttcaaaagaatgcccttcgaatagggctggtgtgatccgtactacttggtttatcatttacagaagaagtgttctttgtacctaatacattgagcatctacaaaggaataaacatattatctggcagtaaaatatgtacacaatgcaaaataaatgagatgaaaataaggagttcaatattactaagtaacggctacacatatattacaacagaatatcaggtagtatgcacaatacgattagtatgatcatctgatataaaaacacaacaaatcagtgttatatgtaaaatgcagctgtgaagctagctgaatgctagaggaatagtgaaatccacacaaagttaagtagtatacatagacattttctaggagaaaagagcacgatattctttggcttcttgggccatttcttccatcgttctatcttttctttcaatatccaggtctaatgtctcgttttttgcattcatctgttatgaacagagagattattcagatttatttgatggagtatcagatgaagtgagagttgttccaagcagcatcactaaccatgccattattgttatcattgttctcaaaatcttccttccttcggggaaggatgtgaacgtgaacatgtggaactgtttggccagagtgaggtccatcctgataagtagcaatatttattcaacttcatatcatacacaatagaagataaagttagttttcattagcttttacaacttttcattaaaaaatgttacgaacatactaaattgtgatctgaaaccacaattttgtgagcaacatcatacttgtcatgctcacacgaattttagctataatatttcttaaattcaaagtgaaagacctcacaggtacaagataaatcgaacctgaattgtgaatgtgagcgaagaagccctctggtactgctcaacacgtacaccaatatcctttgccatgatccacaaatcacgagtctcatcagggctaagatcagcaaatcgtttcacaagactctttgggcatataagaacatgtataatttaagttaaggaagggggtgggggggggagttaaaagtcttaggctgtcaaaaatgcagtgccacatacaatccatcataggacaaaggcaacaagagctgagttgccagttgtcaccagggattaactgaagtaattagcacgaccagaaattaacaaggtaaagcaggtagtattaattgtcttgaaatagaaagcacaataacccttctgaaggcaaaaacaagtgagcactgtgatgtacaccactaccatttttcaatgaaccgatatcgtacattacttatgtagttcagtgcagagtctttctttctttccttttttttttctttttgaaacagaggcacatttcattgatgaatagcaagagaagtttttctctctttttttgcaaataataataataataataataataataataataataataataataataataataataataaataataataataataataataaagtatgagaagttgagagcagataataccgcaatgtgaagtagatactagaaggcactaaattagagagaggagtagagcagctgtgcatacacataattggcagaaataaaggatatgacctgcagggacaagattggaatagaatgatgaacaaacaaagaaggagagagcaatcaggaatgatagatttgttctgaggagaggagaggagaggagaggaaatagctaggtaccagggcgggtgggtcggaggttgacgatggcgaaggagaggggcgaggtgcggaacacctgccgctcggctatctcgtgcggaccaaacctgtacctgcttcccgcgaccggatccatctccttctcccctcttcttggacggcgacggcgatggagagggagaagaggaagcagcagagaagcagttgagttgcgttgggtctaattaattgtcaatggttgtggaactgaggggccgggtcaagtcaagtcaatgatcttgatgggctcccctcccacggtagcagccaggcaagcccatcagaaatactacgtactattcaaatcaggcccattaattgttgtcactttctctatctgaattggtcagcctgcttgtgctttgaataagaagtagggcgatgcatgcatgccagctctccctcacgctaagccaaatcccaatccaacgtgccctgcactatttgtccacaccttcactcccattcgttcctacttgcaaaataaagctgcatgtccttttttttcgccggcccatttcagctgctctcactctcacgcattaataattaacccaatctgcagactgcagtgcaggcaaagctaggcagccacgtacgtccatacgttgcgttgctcatcgattgatcgatcgattagccatctaattggcaaaaccaaatcttgattatttgctagcttcccctagctaacataagctatagcctatagcttcctccctccctctcaaactagcttagttacttccaccagcctcatcaagctatagctagcatgagaaggatacagatacacccctcacatggcggcggcggcggcaccggcggccgtgcacgtcgtcaggcggcagatcagccggtggtgtacacggtgtggaagaggtccagcataggctttcagggcaccgacggcttctccgtctacgactccgccggcaagctcgccttccgtgtcgacaactactcccgccgccgcaaagctttcgccggcgacctgctgctcatggatgggcacggcacgcctcttctctctctcaggccacaggtcgatcaccttctcattcacttcattacttcttctctagctctactcgtatacgtatattatatcgctttagcagcgacctgtttactgatcgatcagtttagtttgctagtttggaatcatgtatatatcttaagataggttgggacttgggactagcgcgtctttaattctctttcattcatttctcactttaagtctttcctaccataatctatagacgatggccgtgtgcttactgcttctgctttgctttcagtccaaaaatttagggtacttcgataaagaaatttcagggtatacttattagctgcaagatttatataatctatcaaactaacaagatccctattatatacatgcgcatcaagtttaaattctcaacttaaaagattcagccttattatttgttgctttgatcaaagctttgctgttatattaatcatgcagccaaacatgcattacctattcgaggctggaatccaaccgttggatttacttttgcttaatctcctatatatgtataaaattatcgctttgcttccttgtttccgttctctgatgatttgattaaaaaaatccagttgtttgagtactccaagtctcaaccgacaaattctactgtactcataatcgtcctaattaactcttaaaaatcttttatgatagatattgaccagtcaaaacaaaggaaaaaaaatctatactagtatgttccatgcgtcattctctataataattgaaagatattgtactactgataaaaacatttaattaattttagtctattgagtaggccgacatgtccaagcaaaatgtaaccaaatccaaaaacaagcaaacaaaatgcttgtatcataataacatgttatatattgtttttcaacctttatgtgcttcacattagatctctccatttgcaacttgcaattttcagttaagtgacaaagaagtaataaaagaaacatgatctgcatgattcgttgtcaacttttcttcagccgctatttttgaactaagcaatgtaaaaaacagataatcagcgtgaattaaaaactaatcttcattgctctaatgtgacagattctcagcctgcacaatcgatggaactgttacagagcacaagaggaagaaggcttggacagcacaagttctccttcagtgtcacagcagcaagtcttctccatgaggaagagctcagctctgcagagcaacgatgaagcagaagttttcatgtcaacaagaacaagtggtgacagccaacctgatgcttctcccagccccagcttcagaatcgacggctgcttctccatgaggagctgcaagatccgcggcagaaacggcgaggaggcggcgcggatcacgaggaagaacgccggcgtgatgtccagaccggtcagtctcggcgacgacgtgttcaccctcgtcgtcaggccaggcgtcgatgttgcggtcgtcatggctatggtcgttgtcatggaccgtatctgccggaggccctacacaccaatggcgtgttcatcatctggaaattcagtagttcatagtggagaaatcatcaaatccaaggaaaaataccatctaaaccgcagtagtagtagtttgctgtaaattttatatattgca
More
|
||||||||||
| CDS seq | atgagtcggatacacccttcgtatcaacgccaagatgccgccgccgccgccgccgcctcaacggcagcgccgcgagcggcggtgtacacggtgtggaagaggtccagcatggggttccagggcaccgacggcttctccgtctacgacgacgccggcagcctcgccttccgtgttgacaactactcgcgccgccacaagctcttctccggcgacctgctgctcatggatggacatggctcgcctctcctcgccctcaccccacagattatcagcatgcatgaccaatggaattgttacagagcgtcagaagaaggccaaggcaagaggacaagatcacaacaactcttctcaatgagaaaatgctcagttatgcaaagcagtcatgaagcagaagtgcacatgtcaggatgtacccatgcgtcgtcagatcgtactggccatgttcccgccttctcaatcgagggcagtttcaagagaagaagctgcaagatccgcaacagcggcggtgaggaggtcgcaaggataacaaggaagaaagctggagcagcatcattgtcactgactcttgctgaagatgttttcagtcttgaggtccaaccgaatcttagttacttccaccagcctcatcaagctatagctagcatgagaaggatacagatacacccctcacatggcggcggcggcggcaccggcggccgtgcacgtcgtcaggcggcagatcagccggtggtgtacacggtgtggaagaggtccagcataggctttcagggcaccgacggcttctccgtctacgactccgccggcaagctcgccttccgtgtcgacaactactcccgccgccgcaaagctttcgccggcgacctgctgctcatggatgggcacggcacgcctcttctctctctcaggccacagattctcagcctgcacaatcgatggaactgttacagagcacaagaggaagaaggcttggacagcacaagttctccttcagtgtcacagcagcaagtcttctccatgaggaagagctcagctctgcagagcaacgatgaagcagaagttttcatgtcaacaagaacaagtggtgacagccaacctgatgcttctcccagccccagcttcagaatcgacggctgcttctccatgaggagctgcaagatccgcggcagaaacggcgaggaggcggcgcggatcacgaggaagaacgccggcgtgatgtccagaccggtcagtctcggcgacgacgtgttcaccctcgtcgtcaggccaggcgtcgatgttgcggtcgtcatggctatggtcgttgtcatggaccgtatctgccggaggccctacacaccaatggcgtgttcatcatctggaaattcagtagttcatagtggagaaatcatcaaatccaaggaaaaataccatctaaaccgcagtagtagtagtttgctgtaa
More
|
||||||||||
| Protein seq | MSRIHPSYQRQDAAAAAAASTAAPRAAVYTVWKRSSMGFQGTDGFSVYDDAGSLAFRVDNYSRRHKLFSGDLLLMDGHGSPLLALTPQIISMHDQWNCYRASEEGQGKRTRSQQLFSMRKCSVMQSSHEAEVHMSGCTHASSDRTGHVPAFSIEGSFKRRSCKIRNSGGEEVARITRKKAGAASLSLTLAEDVFSLEVQPNLSYFHQPHQAIASMRRIQIHPSHGGGGGTGGRARRQAADQPVVYTVWKRSSIGFQGTDGFSVYDSAGKLAFRVDNYSRRRKAFAGDLLLMDGHGTPLLSLRPQILSLHNRWNCYRAQEEEGLDSTSSPSVSQQQVFSMRKSSALQSNDEAEVFMSTRTSGDSQPDASPSPSFRIDGCFSMRSCKIRGRNGEEAARITRKNAGVMSRPVSLGDDVFTLVVRPGVDVAVVMAMVVVMDRICRRPYTPMACSSSGNSVVHSGEIIKSKEKYHLNRSSSSLL |
||||||||||
| Function | Protein LURP-one-related 8 [UniProtKB/Swiss-Prot:Q9ZVI6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0001820 | OsLaMu_12g0001820.01 | Chr12 | 1318976 | 1327624 | + | NAM | ||
| CDS seq | atgagtcggatacacccttcgtatcaacgccaagatgccgccgccgccgccgccgcctcaacggcagcgccgcgagcggcggtgtacacggtgtggaagaggtccagcatggggttccagggcaccgacggcttctccgtctacgacgacgccggcagcctcgccttccgtgttgacaactactcgcgccgccacaagctcttctccggcgacctgctgctcatggatggacatggctcgcctctcctcgccctcaccccacagattatcagcatgcatgaccaatggaattgttacagagcgtcagaagaaggccaaggcaagaggacaagatcacaacaactcttctcaatgagaaaatgctcagttatgcaaagcagtcatgaagcagaagtgcacatgtcaggatgtacccatgcgtcgtcagatcgtactggccatgttcccgccttctcaatcgagggcagtttcaagagaagaagctgcaagatccgcaacagcggcggtgaggaggtcgcaaggataacaaggaagaaagctggagcagcatcattgtcactgactcttgctgaagatgttttcagtcttgaggtccaaccgaatcttagttacttccaccagcctcatcaagctatagctagcatgagaaggatacagatacacccctcacatggcggcggcggcggcaccggcggccgtgcacgtcgtcaggcggcagatcagccggtggtgtacacggtgtggaagaggtccagcataggctttcagggcaccgacggcttctccgtctacgactccgccggcaagctcgccttccgtgtcgacaactactcccgccgccgcaaagctttcgccggcgacctgctgctcatggatgggcacggcacgcctcttctctctctcaggccacagattctcagcctgcacaatcgatggaactgttacagagcacaagaggaagaaggcttggacagcacaagttctccttcagtgtcacagcagcaagtcttctccatgaggaagagctcagctctgcagagcaacgatgaagcagaagttttcatgtcaacaagaacaagtggtgacagccaacctgatgcttctcccagccccagcttcagaatcgacggctgcttctccatgaggagctgcaagatccgcggcagaaacggcgaggaggcggcgcggatcacgaggaagaacgccggcgtgatgtccagaccggtcagtctcggcgacgacgtgttcaccctcgtcgtcaggccaggcgtcgatgttgcggtcgtcatggctatggtcgttgtcatggaccgtatctgccggaggccctacacaccaatggcgtgttcatcatctggaaattcagtagttcatagtggagaaatcatcaaatccaaggaaaaataccatctaaaccgcagtagtagtagtttgctgtaa
More
|
|||||||
| Protein seq | MSRIHPSYQRQDAAAAAAASTAAPRAAVYTVWKRSSMGFQGTDGFSVYDDAGSLAFRVDNYSRRHKLFSGDLLLMDGHGSPLLALTPQIISMHDQWNCYRASEEGQGKRTRSQQLFSMRKCSVMQSSHEAEVHMSGCTHASSDRTGHVPAFSIEGSFKRRSCKIRNSGGEEVARITRKKAGAASLSLTLAEDVFSLEVQPNLSYFHQPHQAIASMRRIQIHPSHGGGGGTGGRARRQAADQPVVYTVWKRSSIGFQGTDGFSVYDSAGKLAFRVDNYSRRRKAFAGDLLLMDGHGTPLLSLRPQILSLHNRWNCYRAQEEEGLDSTSSPSVSQQQVFSMRKSSALQSNDEAEVFMSTRTSGDSQPDASPSPSFRIDGCFSMRSCKIRGRNGEEAARITRKNAGVMSRPVSLGDDVFTLVVRPGVDVAVVMAMVVVMDRICRRPYTPMACSSSGNSVVHSGEIIKSKEKYHLNRSSSSLL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 2.641273 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0120500 | SBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g02800 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0120500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0001400 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0001440 | SBH | 0.236150 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0001420 | SBH | 0.0 | 2.049141 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0001410 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001410 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0012100 | SBH | 1.527143 | 6.006459 | 9.49153 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001400 | SBH | 0.0 | 0.469576 | 0.297061 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0019400 | SBH | 1.3267825 | 0.217161 | 0.070934 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001350 | SBH | 0.044726 | 0.687353 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001440 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001420 | SBH | 0.000000 | 9.212277 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001460 | RBH | 0.000000 | 0.0 | 0.191463 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001450 | RBH | 0.159181 | 0.611071 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G001740 | RBH | 0.234422 | 2.717275 | 0.265867 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0001900 | RBH | 0.289231 | 19.983721 | 4.109836 |
