Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_12g0001320 | OGI:12004000 | 3/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr12:964654-970165 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatctgtttatagaaccatatcttacagatgagagcgtggcattcttcgactgttattctgttaaacaaataaaaaaattaaatatgtactgaacatagggtcaaacatttgacaactagccaacacacaggaatatcattattttcaaaatcacttcaaagttgaccaagacaccttcagcagtacacgggcgccaacaagcttaagctctttcatgtcatatccatgtcttctagctttgaatggacaattttcagagacacgatacgagccatctccctgatcaaccttgaagaccaatggacagtattcagggatatcataatccgagccatccctatgaacagccttgaagattaaaaacaaaggtgtattctccaccacagcaactacaaacctattcaggtcacatggcttggaaatgacaccatcaaagagccgaatcttttcaggaatttgaccaatataggaatataaagataagctgaagccattgtcatgcacttgtgatatgctaacttgtattgtggcctccactgcttcgtggaaaagggctcgactaatgtcgaccgcaccacaatcaccctcaatccgttgcgtaaacactctagatcacatttagattgtactaggtcttaaatctcccatgtgtgcaattcgttgtgcgtgcaatcatgcaaatgtatcattatctgttgcttaagttgcttcccccattcccaacttctttagtcatctcatatatccaatgtttgttcacattgactaatgttttctcggtttggagatttctgaggatttgagaggtcaacgcattgctttctcttagtgtttttgtttgctctttgtcattttgaaggtctgctcatgtttgacagagagggcacaagaataggtcactgtcactttcattggaagtttagagagatggaatggtgtaggagaaatggatgtttctcctaattcataatttcttactgtgcttatactccaaatttacagtccatagtattgtaacttgtatttacttaactacaaattcatcatgccttatgaattgtaagaggccaaaattttggatttatcttcttttgcgcaatgcgagtaatgtgaatacttgtcctttttgatcgcttgcagactgtttttgtttttgaagaaaggcagactgttattgttatgtgtatgtattgcagtccatctctgtctctttgattaatactgaggaaagttcactaatctccatgtcggttgattacttatcaaactaactaggttgttaatacatggttttgtactttgcaggagcagcaatgtgatacagtggaacatcagttgcagttcctcggcctcactgtgaagaaacaatccctgcatgagtctccgacgacgacgacaacgaggacaggaggaaagagcgtaatgagtcaccgcgacgcaactctgttcagctccgatgtcgcgagccttgctgccccaaacttcctattagatggcgtgattaactttgtgatggcgcacatgacaaccaagttgggtgatgagagccttctcctggtgtcgccatccgtggcttctctgctggcgaacttgcaagactatgagcctgaggctgtcgctgatgcagcccaggcactgttactggcatctcgcaggatggtgttattcccggtgaacaacagcgagaggtttgcgataggcgaacaaacgataaaaaataatagatcaatcacagaagacacgagatttaacgtggaaaaaccacgggcaccagccagcaaaatatcttcactatatctgatgtgaggttacgtcgccgcacggcggtttacaagaggtatatatatggtggaaccctaaaagggatgatgatccgtactaagcataccggtgacgggcctccgctccactcaacagacaaggccgacgatgggtcacactggagtcttcttgtgctggacaacatcaccggccgcttcgtccaccacgacagtatggacggcgccaatctgccggcagcaacccgcctcgccgacgcgctccggccgctgctcccggcgccaccgcagggacagcccatctcaggcccgacaccgcagcagagcaatgggtacgattgcggcgtctacctgttggcagttgccctggccatctgccggtggtggaagaagcatccaaggacagaagaagcggcgccctgctggtttgagtcggtgatggatcaagtaagtgctgagagcgtcgcagccatgagactcaacttggcccaaaagatcaacttggagctcattaagcaaggagacacaaccccctcctcgtcttggcctagcagcagcagcagcagcagacagtaaactgattagatagcgctatctcattcattacacagttcctctctgacttagccttgcttaatctcttagatagctggttcagtaaactgagctgaacacttagtaactccagtctctgtccctgtcagtttttattgtctggcagattggcattggcaatccctcaccactttactactatttcagtaaacataagatgattggatgtctgttgcctgttagtaaaccgctggactggagttgcagcttctgcggtttgcttcttcaacggttgtcctggcaataattcagtaatcaagcgatgctttcataaattctttttttttcttttctacaccctctcatgctcattatctgcttgctgtaatgctgttggtggtctcatttttgtaatgttgttggtggactcatttttgttttaggtaacatgcgaaaggttcacacgtctttgtattaaggagtagaacttgtttagttacaagatgccaaactgttcggacacttggccgaccaaaatacaaagaggaaaaaaatatcattacaaacagatggcaaaaaaaagttttattcatcaatgcgatgctacaccgaagattcatctattatttattatcatgcaaacaatccattttagcaaagtcaagctgaaggagtgacgtcctgaaaatgattccaggggagtagcatatcttcaattttcccaacaaaacgcgccccagaagcagatcagtattacctaacataagcatcactatttcacacgcagacacaatgacggaacaaattaatggatgatcccttttctcttcggcactcttgcaagagtatattgtgtaagttaaacattagaattccacaagagttgcatccaaaacatttggtaaattcaggtagcaataccaaatttaatctgcattaatatgcaataaataagaacagataagagtgtggcatccttcacctgtcgaacttctacaacaaataaaaaacttaaatatgtactcaaaataaggcccaaacatttgcctactagtcaatacacagaaatatcgctatttctgcttagcatagattatgtataccccaggaatattcaaaatcacttcaaagttgaccaagacaccttcaacagtacacgggcgccaccaagtttaagctctttcatgtcatatccatgtcttctagctttgaatggacaatattcagagacacgatacgagccatccccctgatcaaccttgaagaccaatggacagtatttagggatatcataatccgagccatccctatgaacagccctgaagattaaaaacaaaggtgtattctccaccacagcaactaccctattcaggtcacatggcttggaaatgacaccatcaaagagccgaatcttttcagggattcgactggtataagaatataaagataagctcaagccattgacatgcacttgtgatatgctaacttgtattgtggcctccactgcttcgtgaaaaagggctcgactaatgtcgaccgcaccacaatcaccctcaatccgttgcgtaaacactctatcgggaagcacgaattcgctgcagataatggcaccatcgatgagctgaaaatcatcgtcttgtgtctctccgttcttgatcttcatgtcgaactcgatgagcacacgaacttggtttccaatgcctctcttggggcctgacattggtatcaacgaattatccgaatcaacgccattgtcttgccccatgatgaaagggtcatccctggtgcggttgaagatgtagttgcgtagcgggtccaaatgatcccggacagcaaagtatccatacaagtgaactgggccatcaacagcagcagtgatattggatagcttgagcgagaatatctgcatcatgaattgcacactgtgcgccttgcaagcccacatgtgtggccggcaattggttgggtttgacagcatcattgcctccatacgagctgaacagccatacacatcagtggatgattagaagttagattgttaaccccaatattgaaatgagcaggaaagaaacaaatagatacgaataaggtttaaaacagcagactccacactatcatggacccaaagcaagatataccatatcctagatggtgcctttaagagttttttgaagtagtacttaaggaatatctagtgttacttagaactagattatgttatgaaaggtgtaaatttgacatcaagctagacagatatgttatgaaaaaaagggtttaatttgacatcagttccatagtactgagcatacacaagaacaaattagattttattattattattattattattttgccgtgctgaccaaagacccctcagtccaaaattccttacgatgtacaaatttacaagtttagaattccgacaagaagatgtcgaaactgaatggagtatgccggagcgccctcccaaaaccaaaataaaagggattgcatctctattctttaaagactcctgcttccttccagattgcgacctcttctttgattgcacccaagaggctgcccgcctcctggggaacaaattaggtgacacagcaatatagtataaaattgaagttaaaagagcatgaattaaatagcatcgatctgaggtgctaccaagtgaagctaaattgaaagggaactaattaagggcagatgagaggattgtagatgatgcaaagttaaaattgaaaaggaactaattaaggagatgagaggatggtaggtgatgcatggtggagaggggaaaaagctagggtttgcaagaagttaaaagttaaaacttactctctcgggtatcggcgaccttgtaaaatctgtgccaaaaatcgtcgccgctgtagatcgatccatcgctatgtttgctgcactcgaggatgaacgcgcgattcaccccgtcctgactacctgctgctcgcctcccattcttctccgcctccgcctccgcctccgcttccgcttccgcctccaccagctcaagctcggactctgcccgccgcttcgccatgacatcccctcgcgattccacccggcctcaagctcgatctctctcgtttgcttcatcttctccctcctcctccacccttcggttttattttgatttttgcggcaacaaatccgaaaccgattcgtatt
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| CDS seq | atggcgaagcggcgggcagagtccgagcttgagctggtggaggcggaagcggaagcggaggcggaggcggaggcggagaagaatgggaggcgagcagcaggtagtcaggacggggtgaatcgcgcgttcatcctcgagtgcagcaaacatagcgatggatcgatctacagcggcgacgatttttggcacagattttacaaggtcgccgatacccgagagactcgtatggaggcaatgatgctgtcaaacccaaccaattgccggccacacatgtgggcttgcaaggcgcacagtgtgcaattcatgatgcagatattctcgctcaagctatccaatatcactgctgctgttgatggcccagttcacttgtatggatactttgctgtccgggatcatttggacccgctacgcaactacatcttcaaccgcaccagggatgaccctttcatcatggggcaagacaatggcgttgattcggataattcgttgataccaatgtcaggccccaagagaggcattggaaaccaagttcgtgtgctcatcgagttcgacatgaagatcaagaacggagagacacaagacgatgattttcagctcatcgatggtgccattatctgcagcgaattcgtgcttcccgatagagtgtttacgcaacggattgagggtgattgtggtgcggtcgacattagtcgagccctttttcacgaagcagtggaggccacaatacaagttagcatatcacaagtgcatgtcaatggcttgagcttatctttatattcttataccagtcgaatccctgaaaagattcggctctttgatggtgtcatttccaagccatgtgacctgaatagggtagttgctgtggtggagaatacacctttgtttttaatcttcagggctgttcatagggatggctcggattatgatatccctaaatactgtccattggtcttcaaggttgatcagggggatggctcgtatcgtgtctctgaatattgtccattcaaagctagaagacatggatatgacatgaaagagcttaaacttggtggcgcccgtgtactgttgaagaagttcgacagagtgtttacgcaacggattgagggtgattgtggtgcggtcgacattagtcgagcccttttccacgaagcagtggaggccacaatacaagttagcatatcacaagtgcatgacaatggcttcagcttatctttatattcctatattggtcaaattcctgaaaagattcggctctttgatggtgtcatttccaagccatgtgacctgaataggtttgtagttgctgtggtggagaatacacctttgtttttaatcttcaaggctgttcatagggatggctcggattatgatatccctgaatactgtccattggtcttcaaggttgatcagggagatggctcgtatcgtgtctctgaaaattgtccattcaaagctagaagacatggatatgacatgaaagagcttaagcttgttggcgcccgtgtactgctgaagtcgaagaatgccacgctctcatctgtaagatatggttctataaacagatga
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| Protein seq | MAKRRAESELELVEAEAEAEAEAEAEKNGRRAAGSQDGVNRAFILECSKHSDGSIYSGDDFWHRFYKVADTRETRMEAMMLSNPTNCRPHMWACKAHSVQFMMQIFSLKLSNITAAVDGPVHLYGYFAVRDHLDPLRNYIFNRTRDDPFIMGQDNGVDSDNSLIPMSGPKRGIGNQVRVLIEFDMKIKNGETQDDDFQLIDGAIICSEFVLPDRVFTQRIEGDCGAVDISRALFHEAVEATIQVSISQVHVNGLSLSLYSYTSRIPEKIRLFDGVISKPCDLNRVVAVVENTPLFLIFRAVHRDGSDYDIPKYCPLVFKVDQGDGSYRVSEYCPFKARRHGYDMKELKLGGARVLLKKFDRVFTQRIEGDCGAVDISRALFHEAVEATIQVSISQVHDNGFSLSLYSYIGQIPEKIRLFDGVISKPCDLNRFVVAVVENTPLFLIFKAVHRDGSDYDIPEYCPLVFKVDQGDGSYRVSENCPFKARRHGYDMKELKLVGARVLLKSKNATLSSVRYGSINR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_12g0001320 | OsLaMu_12g0001320.01 | Chr12 | 964654 | 970165 | - | NAM | ||
| CDS seq | atggcgaagcggcgggcagagtccgagcttgagctggtggaggcggaagcggaagcggaggcggaggcggaggcggagaagaatgggaggcgagcagcaggtagtcaggacggggtgaatcgcgcgttcatcctcgagtgcagcaaacatagcgatggatcgatctacagcggcgacgatttttggcacagattttacaaggtcgccgatacccgagagactcgtatggaggcaatgatgctgtcaaacccaaccaattgccggccacacatgtgggcttgcaaggcgcacagtgtgcaattcatgatgcagatattctcgctcaagctatccaatatcactgctgctgttgatggcccagttcacttgtatggatactttgctgtccgggatcatttggacccgctacgcaactacatcttcaaccgcaccagggatgaccctttcatcatggggcaagacaatggcgttgattcggataattcgttgataccaatgtcaggccccaagagaggcattggaaaccaagttcgtgtgctcatcgagttcgacatgaagatcaagaacggagagacacaagacgatgattttcagctcatcgatggtgccattatctgcagcgaattcgtgcttcccgatagagtgtttacgcaacggattgagggtgattgtggtgcggtcgacattagtcgagccctttttcacgaagcagtggaggccacaatacaagttagcatatcacaagtgcatgtcaatggcttgagcttatctttatattcttataccagtcgaatccctgaaaagattcggctctttgatggtgtcatttccaagccatgtgacctgaatagggtagttgctgtggtggagaatacacctttgtttttaatcttcagggctgttcatagggatggctcggattatgatatccctaaatactgtccattggtcttcaaggttgatcagggggatggctcgtatcgtgtctctgaatattgtccattcaaagctagaagacatggatatgacatgaaagagcttaaacttggtggcgcccgtgtactgttgaagaagttcgacagagtgtttacgcaacggattgagggtgattgtggtgcggtcgacattagtcgagcccttttccacgaagcagtggaggccacaatacaagttagcatatcacaagtgcatgacaatggcttcagcttatctttatattcctatattggtcaaattcctgaaaagattcggctctttgatggtgtcatttccaagccatgtgacctgaataggtttgtagttgctgtggtggagaatacacctttgtttttaatcttcaaggctgttcatagggatggctcggattatgatatccctgaatactgtccattggtcttcaaggttgatcagggagatggctcgtatcgtgtctctgaaaattgtccattcaaagctagaagacatggatatgacatgaaagagcttaagcttgttggcgcccgtgtactgctgaagtcgaagaatgccacgctctcatctgtaagatatggttctataaacagatga
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| Protein seq | MAKRRAESELELVEAEAEAEAEAEAEKNGRRAAGSQDGVNRAFILECSKHSDGSIYSGDDFWHRFYKVADTRETRMEAMMLSNPTNCRPHMWACKAHSVQFMMQIFSLKLSNITAAVDGPVHLYGYFAVRDHLDPLRNYIFNRTRDDPFIMGQDNGVDSDNSLIPMSGPKRGIGNQVRVLIEFDMKIKNGETQDDDFQLIDGAIICSEFVLPDRVFTQRIEGDCGAVDISRALFHEAVEATIQVSISQVHVNGLSLSLYSYTSRIPEKIRLFDGVISKPCDLNRVVAVVENTPLFLIFRAVHRDGSDYDIPKYCPLVFKVDQGDGSYRVSEYCPFKARRHGYDMKELKLGGARVLLKKFDRVFTQRIEGDCGAVDISRALFHEAVEATIQVSISQVHDNGFSLSLYSYIGQIPEKIRLFDGVISKPCDLNRFVVAVVENTPLFLIFKAVHRDGSDYDIPEYCPLVFKVDQGDGSYRVSENCPFKARRHGYDMKELKLVGARVLLKSKNATLSSVRYGSINR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.174242 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0127500 | SBH | 0.701473 | 1.049095 | 1.628171 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g03630 | SBH | 0.402689 | 0.739737 | 1.248834 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0127500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0001990 | SBH | 0.259760 | 3.933907 | 2.350774 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002040 | SBH | 0.0 | 1.765710 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002020 | SBH | 0.696106 | 0.0 | 1.098006 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0001980 | SBH | 0.003337 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001950 | SBH | 4.225143 | 8.532909 | 5.420749 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0028400 | SBH | 1.6907215 | 2.9464815 | 2.235411 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001960 | SBH | 0.0 | 0.0 | 0.408772 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0027400 | SBH | 2.226517 | 3.9819565 | 6.8602625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001820 | SBH | 0.055526 | 0.162072 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002020 | SBH | 0.302489 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002010 | SBH | 3.829069 | 5.235703 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0001940 | SBH | 0.0 | 0.0 | 0.381773 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002010 | RBH | 0.075207 | 2.299615 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G001220 | RBH | 0.000000 | 0.624113 | 0.435370 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0001410 | RBH | 0.280547 | 5.107564 | 2.083540 |
