Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0023710 | OGI:11080990 | 4/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:30527470-30530682 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtatggtgcgaggtgtagcagctgtcagctgaggcaccaaaacaagcttggtggccatggaaagttgcatatccacagtccacaaaatggtgagagcaaggaggaagctcttaaatccaagttagatgccaaggaatgcctggatcaagtactggcacttatcttagatgatgacgagcacaagcagtggtcaggtgcttgcattgagaggttttgcccaccattaattggtgctagtttcaaagactggaaatcacacactatcacggttcgagatacctagattggatggtcggagttcagaaaggcccaaagtgttgcattggatgcaacagattctgagacctgcacctgaactttttgcgttttccgttcacctgtgtaacaccccgacttctgtttatccattgaaaactatttttagttaaaaatcctatattcAaaaattttgttctttgtgtgtagaaagtatctagtgccaagatctcatatgaaaacaatccttgtagcccaaaaatctcattcagaaatcttctctaaaataaaacctcggcatcgaattctatcttaagcccttctccataaattctcctgaatttctaatatatcaaacttcactcaaataagaaaatctcatttgcacccttgtaacatgtcaagattgtccaatattaaattaggtccaaatatctcctcctttcttatcttttcttttcccaaaatttatccaaataatttgaaataccaaacctttcAaaatattccttgaaaccctaaaatttctgagaaagtccaaaccctaggtatagattcaaatgtccttattaaatcctcctttgaaatccttcattctcggtcccctttaaagtattcaaatttcaatgactaaagcgcatcaaatcattaaaattctactgttatcccattactcaaatctacttaaaatgccatttaaaaaccataaaatctcctggaaccctcccttgaaaattaacaaaattaatctgaacaattgcctaaatttagttcaagaaatcaaaaaaaaattaagaatttatgaaattccagtaaatttatctcctctaaattcctcctatactttgtttccttcggtttacacaaatttctttcaaaactgttccaaggaaaagctcataaattttgcaaaTaaattcttccctaaattctccaaaattctttgagatcaaaaaacaaatatgaaatttgaatccaattatccattcaaataatccaaatactcctttcaaataaatctctcgaaattatcaaaagttactatgcttttgggccgttctccttccttcttttcccagccggcccagtcagtctcattccctcccctttccccttctgacctgggccacggccaccgaggcccagcaagcagcccagccagccccaattcgccaagtcactttgagccccaaatcaaagattgtcctcatcttcaatcacttccaacaagactgcccctatctcttcgtatacttcctatttctaactgtggcagatggaaccactggccggataacgtggaggacgacctccggttgctgctggagttagaaattgaagattgccgtgatattgaatcacttccagCAcagctgtccggctctcttaagaaattgaaggtaacggccgaatgccccgaaattcgttcgcttccagtgatgccccattcattgttggagttgattctcgggagccgcaatcaggaattcataacgtcctccaaaacacctagacatcaatactatgaaaaggtcagccatgttccccacaaaataatcgaatatggtaaggctttaaatcctctttgattgctgcgtaccaatattcccatgttggttaagagcaagtttaatagtggagctaactatttgctattagcctatataagagctaatatgtgtaataggtcaacttTCtctcctctctttttcataccatgaatttaacgtaaatatcttaaagcatgtgtagaattaactcttgcatgagaaaaaatactaattactttttttttgtctttatcttccatataagcttatataagcttatagttgttttatagcacactattatccttgctctaatacatttgttatttgggcctgtcaatagacttagaagaggacgaagaaatggaagacaatcaatgaagatctttatccattggaagactacgaagggagtgctctgtgagaccggttgtggattgtgacataagtaattttgcattgtgccaaaaaaaagtaatcttgtcAaaaataaaaacttgtgccactttgctttgttcatgttgttgagagtcatgtgtgagcccacgacctgtgtgagctccatgcgagtacgtacctagtttgtaataatgtgaagtcggtgtgTGAgggcgcatgatgcatgtccgagctagatcatgagatggcacgatgcaaccggaattcatgtggtgcaagccttgtatgtgcctagctataatttatatgTtttccttaatctgtatgcatgaataaataaaaccaaagagaaaaacaacgaaaacgctgcggttgttgagcagcacaaaaccttgtttgtctttccaattagctagtgttaatttgtttcctctcgatcagcatgctacgataaattcgtgtgaggtcgtgtgcaggttggagcttaattgaaaatgtaccgcgcgagatgcagcggctgtcagctcaggcaccaaaacaagctttgtggccatggaaagctacgtatcCAcagtctacaaaatggtgagagcaaggaggaagctcttgaatccaagttagatgccaaggaatgcctagatcaagaactggtacttgtcttggatgatgatgagcgcaagcagtggtcaagtgcttgcattgagagcttttgccaaccattggtgctagcttcaaagactggaaatcacacactatcacggttcaaggtacctagattgaatggtcggagttcagaaaggcccagagtacctgcattggatgcaacagattctgggacctgcacctgaactttttgagttttccattcacctggtatgctcTCAtcacatataacacagatacagttgtttgattacattgtactggaggaagacgctgcagaaagtggcataaatggagctcaacagtcaacacggttcgatcgaaatcagaaactcatagactga
More
|
||||||||||
| CDS seq | atgtatggtgcgaggtgtagcagctgtcagctgaggcaccaaaacaagcttggtggccatggaaagttgcatatccacagtccacaaaatggtgagagcaaggaggaagctcttaaatccaagttagatgccaaggaatgcctggatcaagtactggcacttatcttagatgatgacgagcacaagcagtggtcaggtgcttgcattgagaggttttgcccaccattaattggtgctagtttcaaagactggaaatcacacactatcacgccggcccagtcagtctcattccctcccctttccccttctgacctgggccacggccaccgaggcccagcaagcagcccagccagccccaattcgccaagtcactttgagccccaaatcaaagattgtcctcatcttcaatcacttccaacaagactgcccctatctcttcgtatacttcctatttctaactgtggcagatggaaccactggccggataacgtggaggacgacctccggttgctgctggagttagaaattgaagattgccgtgatattgaatcacttccagCAcagctgtccggctctcttaagaaattgaagctcaggcaccaaaacaagctttgtggccatggaaagctacgtatcCAcagtctacaaaatggtgagagcaaggaggaagctcttgaatccaagttagatgccaaggaatgcctagatcaagaactggtacttgtcttggatgatgatgagcgcaagcagtggtcaagtgcttgcattgagagcttttgccaaccattggtgctagcttcaaagactggaaatcacacactatcacggttcaagatacagttgtttgattacattgtactggaggaagacgctgcagaaagtggcataaatggagctcaacagtcaacacggttcgatcgaaatcagaaactcatagactga
More
|
||||||||||
| Protein seq | MYGARCSSCQLRHQNKLGGHGKLHIHSPQNGESKEEALKSKLDAKECLDQVLALILDDDEHKQWSGACIERFCPPLIGASFKDWKSHTITPAQSVSFPPLSPSDLGHGHRGPASSPASPNSPSHFEPQIKDCPHLQSLPTRLPLSLRILPISNCGRWNHWPDNVEDDLRLLLELEIEDCRDIESLPAQLSGSLKKLKLRHQNKLCGHGKLRIHSLQNGESKEEALESKLDAKECLDQELVLVLDDDERKQWSSACIESFCQPLVLASKTGNHTLSRFKIQLFDYIVLEEDAAESGINGAQQSTRFDRNQKLID |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0023710 | OsLaMu_11g0023710.01 | Chr11 | 30527470 | 30530682 | + | NAM | ||
| CDS seq | atgtatggtgcgaggtgtagcagctgtcagctgaggcaccaaaacaagcttggtggccatggaaagttgcatatccacagtccacaaaatggtgagagcaaggaggaagctcttaaatccaagttagatgccaaggaatgcctggatcaagtactggcacttatcttagatgatgacgagcacaagcagtggtcaggtgcttgcattgagaggttttgcccaccattaattggtgctagtttcaaagactggaaatcacacactatcacgccggcccagtcagtctcattccctcccctttccccttctgacctgggccacggccaccgaggcccagcaagcagcccagccagccccaattcgccaagtcactttgagccccaaatcaaagattgtcctcatcttcaatcacttccaacaagactgcccctatctcttcgtatacttcctatttctaactgtggcagatggaaccactggccggataacgtggaggacgacctccggttgctgctggagttagaaattgaagattgccgtgatattgaatcacttccagCAcagctgtccggctctcttaagaaattgaagctcaggcaccaaaacaagctttgtggccatggaaagctacgtatcCAcagtctacaaaatggtgagagcaaggaggaagctcttgaatccaagttagatgccaaggaatgcctagatcaagaactggtacttgtcttggatgatgatgagcgcaagcagtggtcaagtgcttgcattgagagcttttgccaaccattggtgctagcttcaaagactggaaatcacacactatcacggttcaagatacagttgtttgattacattgtactggaggaagacgctgcagaaagtggcataaatggagctcaacagtcaacacggttcgatcgaaatcagaaactcatagactga
More
|
|||||||
| Protein seq | MYGARCSSCQLRHQNKLGGHGKLHIHSPQNGESKEEALKSKLDAKECLDQVLALILDDDEHKQWSGACIERFCPPLIGASFKDWKSHTITPAQSVSFPPLSPSDLGHGHRGPASSPASPNSPSHFEPQIKDCPHLQSLPTRLPLSLRILPISNCGRWNHWPDNVEDDLRLLLELEIEDCRDIESLPAQLSGSLKKLKLRHQNKLCGHGKLRIHSLQNGESKEEALESKLDAKECLDQELVLVLDDDERKQWSSACIESFCQPLVLASKTGNHTLSRFKIQLFDYIVLEEDAAESGINGAQQSTRFDRNQKLID
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024100 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023990 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023590 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023330 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0432600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024030 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023550 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023770 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023700 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023370 | SBH | 1.251961 | 12.032497 | 1.134784 |
