Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0023640 | OGI:11077650 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:30321033-30325137 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcaacaatagtaggtacattggttggatcatgcatcaataagttgcaagcgattattacagacaaggcaatactcattttaggtgtaaaagatgagcttgaagaactgcagcgaagaacagatctcataaaatcttctcttaaggatgctgaggcaaggaggatggaagattcgacagttgaaaaatggcttgaccagctaagaGATgttatgtatgatgttgatgatattattgatttggctagatttaaaggaagtgtcctactacctgactatcctatgtcatcgtcaaggaaatatactgcttgcagtggcctttcactttcatcttgcttttctaatattcgtatacgtcatgaagttgctgtaaaaattagaagcctcaacaaaaagatggataacatttcaaacgatgaggtatttttaaaactaaaccgcacacaacataatggaagtggttcagcatggacaccgatagaaagctccagcctagttgaacccaaccttgtgggcaaggatgtcgtacatgcttgcagagaagtggtggatttggtgcttgcacacaaggcaaagaatgtttacaagcttgctattgttggaacaggaggagttggtaagacaacactatctcagaaaatattcaatgataaaaaattagaagggagatttgaccatcatgcatgggtttgtgtttccaaggagtattctagggattctcttttgagacaaattcttcgtaatatgggaattcgatatgagcaagatgaatcagctccagagctccaaagaaagcttaaatcagacattgcaaataagagcTttttccttgtgttggatgatgtgtggcactacgaagcatggGAAgatttactaagaaccccactagatgccgccgccacaggagtaattgtagtaactactagagatgaaactattgctcgagtaattggggtggaccacacacatagagttgatttgatgtcagacgatgtgggatgggagctgctttggaggagcatgaacatcaaagaggagaaccaagtgcaaaatctacggtacgtaggtattgagattgttcgcaaatgtggtggccttcctcttgcaatcagggttattgctaatgtttTAGcaagccaagatcaaacggagaatgaatGgagacggatAttggggaaaaatgcctggtccatgagcaaacttcctcatgaattaagtggtgctttatatcttagttatgaagtgttgccacaccagctgaagcaatgttttctttattgtgcacttttccctgaagatgcaaccattttccgtgatgatcttactaggatgtgggttgctgaaggctttatagatgagcaagaaggccaactactagaagacacagcagagaggtgctattatgagctgatccatcggaacttgctcaaaccaaatggctcttattttgaccacagcaggtgtaagatgcatgacctcttaaggcagcttgcttgttatttgtcaagagaagaatgttttgttggagatccagagtcactagggagtaataatatgtgcaaagtacgtcgtatttcagttgtcacagagaaggacatagtggtgttaactagcatggacaaggatcaatataaagtaaggacttatagaacttgctatgataagccactgcgagttgataattcacttttcaagaaacttacatatcttcgtgttttggatttgactagctcacatgtagaaagcatcccaagttatattgaaaatctgattcatctgcgtttgcttgaccttgatacgacagacatttctcatctaccggagtccattggtttccttcaaaatcttcaaatattgaacttgcagctgtgtaaatctttgcacagtcttcctttggcaaccactcaactgtgtaatttgaggcggcttggtcttcgtggtacaccaataagtcaggttccaagagggataggaagactggaattcctcaatgatttaggaggatttcctgttggtggtggaagtggcaatactgaaatgcaagacggatggaacttgcaggagttagctcatctttcacagttgcgccggcttgacttgaacaaattggaaagagcaactcctaggagcagtacagatgcattgttgctaactgacaaaacgcatatgaaaaaactaaatctatgctgcactgaacccgctgatgaagcatattcagaggaaggcattagcaatattgagataatctttcagcaactaactcctccacgcaatttagaacaactttttattgtatcattctttggccgaaggttccccacctggcttaatacttcccatttatcttcactgacatatttgaaacTtttacattgcaaatcctgcatgcatcttccaccaacagggaagctaccaaacttgaaatatctgagaattctggaagcaactgcaatcaccaagataggacccgaatttgttggatgctgggagggtaatcttggatccacagaggcagttgctttccccaagctcgaggtgttggtcatcgagaatatgcccaactgggaggagtggtcctttgtcaaagaAGaaaaggtacaggaggaggaagcatctgcagcagccaaggaaaggggagaggatggaactgctgcttcgaagcaaaaggaggaagaagccttgtctccaaggtcgtcgtggctgctgccttgtttgaaggaattggtactttggaactgtcccaagctgagggctctcccaccacaacttggacagcaggccaccaacttgaaggagctcattataagactagcaagatgcttgaagacggtggaggacctcccattcctctctggtttccttcaagttgaaggatgtgaaggcttggagagggtatccaacctttcccaagtgagagagctgcgagtagatggttgcctaaatttgaggtgtgtctaggagttgcgtaatttggagcagctacgggttgccaggagtatgcaggagatctcttcattgtgggtccctagccttcgagagcaacactgccagctccatggagataagctggaggtctctgactgggtttgagacccAATTatatggcgcaaaaggtatgtaataactgattgattgcttcggagtttgcacactaatctgccggttttgggttgttgcatttcatgtcccttctctgctctttccattgtctgcactctgcagctattgctaacattcggtgaccttgttaatgaattaattctttagattggacacatcgacggttattcggccaatatgttttagtttattattttgttagtgttgcataactaagctatctcgtggtcaaggttttggtgaagacgtatacacacacaaattaataggtgattataccccttatcctctcatggttttatatattgacaccctgcatggcgtgctaaattaatgtcctatcctagatatactataatatgcaaataccagataaacatattaattgagaacagatagagattattgttattccaaatagaaatggcaccaattgtctcaccccaaaaaaacacatgattttattgctgttcattatgtgccaacataaataggaataccgtgtttggatgcacccatccaaggacttgagttagttagggagaaccatttttttcacctttggtacacaaactgcataagtaaaggagaaatatgggccaagaaataaatatcatttagttcagctcggcgatgctaggatgcagaacagcttgcttgcatttagccctcagtgaccccggcctttctcgccttgtacttattctgatcgattaatattttaactatatccctatcaaataaaataagcagggtatattgctctgcccacatgcttatgtgtagttcattgtggctttttattagactgtcttttttttctgatgcttggtaggcttaactccagaaaacatgattcttgcaaaaactgatcgcacttgtattttgttttccttaactaagttattaaagtagcaaatttctTAtatatataaccatgcttaatttttgtgtgcttgtttAttttgtaggttgccatttttga
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| CDS seq | atggcaacaatagtaggtacattggttggatcatgcatcaataagttgcaagcgattattacagacaaggcaatactcattttaggtgtaaaagatgagcttgaagaactgcagcgaagaacagatctcataaaatcttctcttaaggatgctgaggcaaggaggatggaagattcgacagttgaaaaatggcttgaccagctaagaGATgttatgtatgatgttgatgatattattgatttggctagatttaaaggaagtgtcctactacctgactatcctatgtcatcgtcaaggaaatatactgcttgcagtggcctttcactttcatcttgcttttctaatattcgtatacgtcatgaagttgctgtaaaaattagaagcctcaacaaaaagatggataacatttcaaacgatgaggtatttttaaaactaaaccgcacacaacataatggaagtggttcagcatggacaccgatagaaagctccagcctagttgaacccaaccttgtgggcaaggatgtcgtacatgcttgcagagaagtggtggatttggtgcttgcacacaaggcaaagaatgtttacaagcttgctattgttggaacaggaggagttggtaagacaacactatctcagaaaatattcaatgataaaaaattagaagggagatttgaccatcatgcatgggtttgtgtttccaaggagtattctagggattctcttttgagacaaattcttcgtaatatgggaattcgatatgagcaagatgaatcagctccagagctccaaagaaagcttaaatcagacattgcaaataagagcTttttccttgtgttggatgatgtgtggcactacgaagcatggGAAgatttactaagaaccccactagatgccgccgccacaggagtaattgtagtaactactagagatgaaactattgctcgagtaattggggtggaccacacacatagagttgatttgatgtcagacgatgtgggatgggagctgctttggaggagcatgaacatcaaagaggagaaccaagtgcaaaatctacggtacgtaggtattgagattgttcgcaaatgtggtggccttcctcttgcaatcagggttattgctaatgtttTAGcaagccaagatcaaacggagaatgaatGgagacggatAttggggaaaaatgcctggtccatgagcaaacttcctcatgaattaagtggtgctttatatcttagttatgaagtgttgccacaccagctgaagcaatgttttctttattgtgcacttttccctgaagatgcaaccattttccgtgatgatcttactaggatgtgggttgctgaaggctttatagatgagcaagaaggccaactactagaagacacagcagagaggtgctattatgagctgatccatcggaacttgctcaaaccaaatggctcttattttgaccacagcaggtgtaagatgcatgacctcttaaggcagcttgcttgttatttgtcaagagaagaatgttttgttggagatccagagtcactagggagtaataatatgtgcaaagtacgtcgtatttcagttgtcacagagaaggacatagtggtgttaactagcatggacaaggatcaatataaagtaaggacttatagaacttgctatgataagccactgcgagttgataattcacttttcaagaaacttacatatcttcgtgttttggatttgactagctcacatgtagaaagcatcccaagttatattgaaaatctgattcatctgcgtttgcttgaccttgatacgacagacatttctcatctaccggagtccattggtttccttcaaaatcttcaaatattgaacttgcagctgtgtaaatctttgcacagtcttcctttggcaaccactcaactgtgtaatttgaggcggcttggtcttcgtggtacaccaataagtcaggttccaagagggataggaagactggaattcctcaatgatttaggaggatttcctgttggtggtggaagtggcaatactgaaatgcaagacggatggaacttgcaggagttagctcatctttcacagttgcgccggcttgacttgaacaaattggaaagagcaactcctaggagcagtacagatgcattgttgctaactgacaaaacgcatatgaaaaaactaaatctatgctgcactgaacccgctgatgaagcatattcagaggaaggcattagcaatattgagataatctttcagcaactaactcctccacgcaatttagaacaactttttattgtatcattctttggccgaaggttccccacctggcttaatacttcccatttatcttcactgacatatttgaaacTtttacattgcaaatcctgcatgcatcttccaccaacagggaagctaccaaacttgaaatatctgagaattctggaagcaactgcaatcaccaagataggacccgaatttgttggatgctgggagggtaatcttggatccacagaggcagttgctttccccaagctcgaggtgttggtcatcgagaatatgcccaactgggaggagtggtcctttgtcaaagaAGaaaaggtacaggaggaggaagcatctgcagcagccaaggaaaggggagaggatggaactgctgcttcgaagcaaaaggaggaagaagccttgtctccaaggtcgtcgtggctgctgccttgtttgaaggaattggtactttggaactgtcccaagctgagggctctcccaccacaacttggacagcaggccaccaacttgaaggagctcattataagactagcaagatgcttgaagacggtggaggacctcccattcctctctggtttccttcaagttgaaggatgtgaaggcttggagagggtatccaacctttcccaagtgagagagctgcgagtagatggttgcctaaatttgagctacgggttgccaggagtatgcaggagatctcttcattgtgggtccctagccttcgagagcaacactgccagctccatggagataagctggaggtctctgactgggtttgagacccAATTatatggcgcaaaaggttgccatttttga
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| Protein seq | MATIVGTLVGSCINKLQAIITDKAILILGVKDELEELQRRTDLIKSSLKDAEARRMEDSTVEKWLDQLRDVMYDVDDIIDLARFKGSVLLPDYPMSSSRKYTACSGLSLSSCFSNIRIRHEVAVKIRSLNKKMDNISNDEVFLKLNRTQHNGSGSAWTPIESSSLVEPNLVGKDVVHACREVVDLVLAHKAKNVYKLAIVGTGGVGKTTLSQKIFNDKKLEGRFDHHAWVCVSKEYSRDSLLRQILRNMGIRYEQDESAPELQRKLKSDIANKSFFLVLDDVWHYEAWEDLLRTPLDAAATGVIVVTTRDETIARVIGVDHTHRVDLMSDDVGWELLWRSMNIKEENQVQNLRYVGIEIVRKCGGLPLAIRVIANVLASQDQTENEWRRILGKNAWSMSKLPHELSGALYLSYEVLPHQLKQCFLYCALFPEDATIFRDDLTRMWVAEGFIDEQEGQLLEDTAERCYYELIHRNLLKPNGSYFDHSRCKMHDLLRQLACYLSREECFVGDPESLGSNNMCKVRRISVVTEKDIVVLTSMDKDQYKVRTYRTCYDKPLRVDNSLFKKLTYLRVLDLTSSHVESIPSYIENLIHLRLLDLDTTDISHLPESIGFLQNLQILNLQLCKSLHSLPLATTQLCNLRRLGLRGTPISQVPRGIGRLEFLNDLGGFPVGGGSGNTEMQDGWNLQELAHLSQLRRLDLNKLERATPRSSTDALLLTDKTHMKKLNLCCTEPADEAYSEEGISNIEIIFQQLTPPRNLEQLFIVSFFGRRFPTWLNTSHLSSLTYLKLLHCKSCMHLPPTGKLPNLKYLRILEATAITKIGPEFVGCWEGNLGSTEAVAFPKLEVLVIENMPNWEEWSFVKEEKVQEEEASAAAKERGEDGTAASKQKEEEALSPRSSWLLPCLKELVLWNCPKLRALPPQLGQQATNLKELIIRLARCLKTVEDLPFLSGFLQVEGCEGLERVSNLSQVRELRVDGCLNLSYGLPGVCRRSLHCGSLAFESNTASSMEISWRSLTGFETQLYGAKGCHF |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0023640 | OsLaMu_11g0023640.01 | Chr11 | 30321033 | 30325137 | + | NAM | ||
| CDS seq | atggcaacaatagtaggtacattggttggatcatgcatcaataagttgcaagcgattattacagacaaggcaatactcattttaggtgtaaaagatgagcttgaagaactgcagcgaagaacagatctcataaaatcttctcttaaggatgctgaggcaaggaggatggaagattcgacagttgaaaaatggcttgaccagctaagaGATgttatgtatgatgttgatgatattattgatttggctagatttaaaggaagtgtcctactacctgactatcctatgtcatcgtcaaggaaatatactgcttgcagtggcctttcactttcatcttgcttttctaatattcgtatacgtcatgaagttgctgtaaaaattagaagcctcaacaaaaagatggataacatttcaaacgatgaggtatttttaaaactaaaccgcacacaacataatggaagtggttcagcatggacaccgatagaaagctccagcctagttgaacccaaccttgtgggcaaggatgtcgtacatgcttgcagagaagtggtggatttggtgcttgcacacaaggcaaagaatgtttacaagcttgctattgttggaacaggaggagttggtaagacaacactatctcagaaaatattcaatgataaaaaattagaagggagatttgaccatcatgcatgggtttgtgtttccaaggagtattctagggattctcttttgagacaaattcttcgtaatatgggaattcgatatgagcaagatgaatcagctccagagctccaaagaaagcttaaatcagacattgcaaataagagcTttttccttgtgttggatgatgtgtggcactacgaagcatggGAAgatttactaagaaccccactagatgccgccgccacaggagtaattgtagtaactactagagatgaaactattgctcgagtaattggggtggaccacacacatagagttgatttgatgtcagacgatgtgggatgggagctgctttggaggagcatgaacatcaaagaggagaaccaagtgcaaaatctacggtacgtaggtattgagattgttcgcaaatgtggtggccttcctcttgcaatcagggttattgctaatgtttTAGcaagccaagatcaaacggagaatgaatGgagacggatAttggggaaaaatgcctggtccatgagcaaacttcctcatgaattaagtggtgctttatatcttagttatgaagtgttgccacaccagctgaagcaatgttttctttattgtgcacttttccctgaagatgcaaccattttccgtgatgatcttactaggatgtgggttgctgaaggctttatagatgagcaagaaggccaactactagaagacacagcagagaggtgctattatgagctgatccatcggaacttgctcaaaccaaatggctcttattttgaccacagcaggtgtaagatgcatgacctcttaaggcagcttgcttgttatttgtcaagagaagaatgttttgttggagatccagagtcactagggagtaataatatgtgcaaagtacgtcgtatttcagttgtcacagagaaggacatagtggtgttaactagcatggacaaggatcaatataaagtaaggacttatagaacttgctatgataagccactgcgagttgataattcacttttcaagaaacttacatatcttcgtgttttggatttgactagctcacatgtagaaagcatcccaagttatattgaaaatctgattcatctgcgtttgcttgaccttgatacgacagacatttctcatctaccggagtccattggtttccttcaaaatcttcaaatattgaacttgcagctgtgtaaatctttgcacagtcttcctttggcaaccactcaactgtgtaatttgaggcggcttggtcttcgtggtacaccaataagtcaggttccaagagggataggaagactggaattcctcaatgatttaggaggatttcctgttggtggtggaagtggcaatactgaaatgcaagacggatggaacttgcaggagttagctcatctttcacagttgcgccggcttgacttgaacaaattggaaagagcaactcctaggagcagtacagatgcattgttgctaactgacaaaacgcatatgaaaaaactaaatctatgctgcactgaacccgctgatgaagcatattcagaggaaggcattagcaatattgagataatctttcagcaactaactcctccacgcaatttagaacaactttttattgtatcattctttggccgaaggttccccacctggcttaatacttcccatttatcttcactgacatatttgaaacTtttacattgcaaatcctgcatgcatcttccaccaacagggaagctaccaaacttgaaatatctgagaattctggaagcaactgcaatcaccaagataggacccgaatttgttggatgctgggagggtaatcttggatccacagaggcagttgctttccccaagctcgaggtgttggtcatcgagaatatgcccaactgggaggagtggtcctttgtcaaagaAGaaaaggtacaggaggaggaagcatctgcagcagccaaggaaaggggagaggatggaactgctgcttcgaagcaaaaggaggaagaagccttgtctccaaggtcgtcgtggctgctgccttgtttgaaggaattggtactttggaactgtcccaagctgagggctctcccaccacaacttggacagcaggccaccaacttgaaggagctcattataagactagcaagatgcttgaagacggtggaggacctcccattcctctctggtttccttcaagttgaaggatgtgaaggcttggagagggtatccaacctttcccaagtgagagagctgcgagtagatggttgcctaaatttgagctacgggttgccaggagtatgcaggagatctcttcattgtgggtccctagccttcgagagcaacactgccagctccatggagataagctggaggtctctgactgggtttgagacccAATTatatggcgcaaaaggttgccatttttga
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| Protein seq | MATIVGTLVGSCINKLQAIITDKAILILGVKDELEELQRRTDLIKSSLKDAEARRMEDSTVEKWLDQLRDVMYDVDDIIDLARFKGSVLLPDYPMSSSRKYTACSGLSLSSCFSNIRIRHEVAVKIRSLNKKMDNISNDEVFLKLNRTQHNGSGSAWTPIESSSLVEPNLVGKDVVHACREVVDLVLAHKAKNVYKLAIVGTGGVGKTTLSQKIFNDKKLEGRFDHHAWVCVSKEYSRDSLLRQILRNMGIRYEQDESAPELQRKLKSDIANKSFFLVLDDVWHYEAWEDLLRTPLDAAATGVIVVTTRDETIARVIGVDHTHRVDLMSDDVGWELLWRSMNIKEENQVQNLRYVGIEIVRKCGGLPLAIRVIANVLASQDQTENEWRRILGKNAWSMSKLPHELSGALYLSYEVLPHQLKQCFLYCALFPEDATIFRDDLTRMWVAEGFIDEQEGQLLEDTAERCYYELIHRNLLKPNGSYFDHSRCKMHDLLRQLACYLSREECFVGDPESLGSNNMCKVRRISVVTEKDIVVLTSMDKDQYKVRTYRTCYDKPLRVDNSLFKKLTYLRVLDLTSSHVESIPSYIENLIHLRLLDLDTTDISHLPESIGFLQNLQILNLQLCKSLHSLPLATTQLCNLRRLGLRGTPISQVPRGIGRLEFLNDLGGFPVGGGSGNTEMQDGWNLQELAHLSQLRRLDLNKLERATPRSSTDALLLTDKTHMKKLNLCCTEPADEAYSEEGISNIEIIFQQLTPPRNLEQLFIVSFFGRRFPTWLNTSHLSSLTYLKLLHCKSCMHLPPTGKLPNLKYLRILEATAITKIGPEFVGCWEGNLGSTEAVAFPKLEVLVIENMPNWEEWSFVKEEKVQEEEASAAAKERGEDGTAASKQKEEEALSPRSSWLLPCLKELVLWNCPKLRALPPQLGQQATNLKELIIRLARCLKTVEDLPFLSGFLQVEGCEGLERVSNLSQVRELRVDGCLNLSYGLPGVCRRSLHCGSLAFESNTASSMEISWRSLTGFETQLYGAKGCHF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0676100 | SBH | 1.142762 | 1.287942 | 1.539014 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45180 | SBH | 0.104599 | 0.260963 | 0.175556 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0676100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023840 | SBH | 0.069281 | 0.000000 | 1.847165 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023830 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023460 | RBH | 0.264463 | 0.721511 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023140 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023510 | SBH | 0.000000 | 0.279106 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0420800 | SBH | 0.2352695 | 1.2420205 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023950 | SBH | 0.170500 | 0.197489 | 0.487290 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023840 | SBH | 1.203734 | 0.746390 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023840 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023280 | SBH | 2.088418 | 9.239458 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023070 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023550 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023570 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013870 | SBH | 0.0 | 8.784555 | 0.0 |
