Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0022180 | OGI:11074950 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:28240089-28247545 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaaaccctaaacccaaatttcccctttgtccagttctccaatccccaacctgtgccgtgcgcgaggaggggcgcggtagggcgtagagcggcgcgcgcgcgggtcggcggcgcggcagccggcactggcagcgcagcgcagcgcagggagcaaggcagaggcagccaccaaccagggactgaaggcaggcagaggtaacaagctacagagAGGAGAGGAAGAGGAGAGATTAGGAATGTTGAGGTATTGTTGAGTTTCTCTTCTATTTACCCTTTTGCAACTGGATGATGGATTGTGAACTCATATGACTAGTGCTTGTTGCTATGCTTAATGTAGACGTGATGGATAATGCTGCATCGTATAATATCGTGAATTGATATTGCtttttttttccccttcttattctgttctaattctcgcgcgctagttcatgtgccacacctaatttttttgtcctccgccactgaccttatatgcgctagttcatatacgaatttttttttgtcctccgccactgacttatatgttctttagtttgctaaaatcctctcataacatacattttagctccttcaagaagtggctcctggttttcttgctctcctcttgcgatattgctgggtactccctctgtttcataatgtaagactttctagcattgcccacattcatataggtagtgtttggttggtgggatgaggtgggatgggatgggatgaacccactttcaggggtgtttggtttaggggtgagtgggatgggttggtccctagagaggaatattcctctcagatccgggaccaactcatccggccaaaactggcggacaaactcgtcccacctgggacgagcgaacggcgtgacgacgctgctcgcgcgctcaccctgctcgccctcaggagacggcggcgggctcatcgacggcggcggcgacaggctcagcagcggcggtggcgacaggctcgggcgacaacggcaggctccacggcggcggtaggcgacaggctcggcagcagcggcgtccGggggctcggcggcgtcggatcttgtggtggggaaggcggcggcgccggatctgacaatggggagggctcgggtggcggaagatggctcgagcgacggtggaaggctccagggcggcggatccgacaatggggagggctgcgctgacggaagacggctcgggcgacggtggcgacaagctcggaagtggcggcgtcgaggggctcggcggcactggatcctgtggcggggaaggcggcggcggcggatccgacgatggggagggctgcgccgacggatccggcggcggcccggccgtccgtcgtcgtccccgaagctctcggcgtcgtcgtcgtcgtcgtccgtcgctagcctgtccctctccctctcccgtgcggacctcgccgccatcatcgtcgccgagccatggctgctccgcgcgaaggtcgacgccatcacccgccgcatcgcgtcccttcgcgaccgcagctcggtggcggagatagaggtgagggcagaggcagcggcggccatggttgttgcaaacggcgtcgtcagtggtggcaaacggcgtccatcccatccctccctcgtcccttcaaccaaacaaaaaactgagatcgtcctattctataaaccaaacacgcaaatggaatcatcccaacctcaaaatcatggatggtttcatcccatcccacctagtctcagaaccaaacactaccatagatgtcaatgaatctaaacatatatgtgtgtctagattcattaacatatatatgaatgtgggcaaggctagaaagtcttacattatgaaaccgaggaagtatttttcttcttcttgatatatcaacgcacaaaagctttttcagtgttcgttgaaaaaaagagcaaaattttctcatgaggaattaaaactgattttcttacacttatgattctttaaattgcaaatttgcagtgagttatttacagcccctcaaatttccttttcgccaactattccttctaggtattgaacagaacgttttgcttcttctatctatttttataattattttgaggtacacatattgcatagttttaagctcgtatcattagcatatattcaaggtctgatagattaatcttatgggtgcaggtggcaatagccgaattcatttctcaatgatgagccctatgtaaagttgtatacttctccatatttcacatggttctgtgccggcagcccaaatatgtattccaatggtgcagacacctgagaattccccccctgggactctcttcctgccccttctctgtactgacagcttcagcttcagttcaatcagactgctctagtgatgatgaaaaactgaattgtgctccgtctcaacatgcccggaaaagatcccgccctttgtgctctgatagtgttgtacagactctccactgcctaaagagacgacctgccattgcatttgcctactttaaagatacacagagcattgggtttaatcatgacttttcaacctactcagagatgattcagattctatcccactcacgccaggggaagatgttagtttcattgttctctgagcttgtttcaagtagtaatgctagtggtcctgaaattttgcccctcgttgatcaccacagaagaacatgtgctactccatgttcactctcgttcatggttgattgcttgatcaaggcatgcatcacttgctatgatgtacaagcaaccatatgcttatttagtggcatttgcaggcttggagttgtcccatctgtttggacttggaacctgcttctcaaatttatagctgagactggtgaatatgagatggttctcacagcttataatgaaatgaagtgctttcagctgactcccgatgtttatacatttgccatagtcactaggtcactttttcaagcaaagaaagtggacgaggctttgcaagtttggtccgagatgactgaaatgggagtgaaaccagatgcacgtgggtactcgtcatttctaattggtctgtgtgattgcggaaaatatgatttagcttatgttattctgcaagagattaatagggagaaggttcctgttgaggccatggcttataacatggtaatggatggactatgcaaagaaatgagattggatgaggcagaaaagctcttggaaaacaaggccagacaaggatccaaccctgatgtatatggttatagctatctgattcggagttattgcaaaatgggcaacctaataaaggctgtggatcattatgaagccatggtttctcatggtattgagacaaattgccacattgtaagttaccttctgcaatgcttcaggaagttaggcatgacatctgaagtaatcgcgtatttcctgaaatttaaagattcagggcttcatcttgacaaggtgatttataacatttctatggatacttattgcaagaatgggaacatgaacgaggcagttaagctactgaatgaaatgaagtgtgggggtttgacacctgacaaaattcactacacatgcctaatcaatggttactgtttgaagggagaaatgcaaaatgcacagcaggtatttgaggaaatgctgaaggccaatattgagccagatatagttacatataacatattggctagtgggttttgcaagagcggtcttgttatggaggtgtttgatcttctagaccgtatggcagatcaaggtttggagcctaattcactcacctacggtatagcaattgttggattttgtagaggaggcaaccttagtgaagcagaggttctatttaatgtagtagaagaaaaaggaattgatcatatcgaagtgatgtacagttcgatggtttgtggctatttgctttcaggctggactgatcatgcttacatgctttttgtaagggttgctcgacaaggaaatcttgtggatcatttttcatgttctaagttgataaatgacctctgtagagttggaaatgtccagggggcttcaaatgtttgtaagattatgttagaacataatgttgtacctgatgtgatttcatatagcaaactcatatcaatctattgtcagaatggagatatggacaaagctcacttatggttccatgatatggttcagcgaggactttctattgatgttattgtatacactatactgatgaatggttactgcaaggctggtcgtctgcaagaagcttgtcaattgtttgttcaaatgacaaacttgggcataaagcctgatgtgattgcatatacagttctactggatggtcacttaaaggagacccttcagcaaggttgggaggggattgctaaagagagaaggagctttcttcttagagcgaatcataacaagttattaagctccatgaaagacatgcaaattgaacctgatgtaccctgttacacggtgttgattgatggaaagtgcaaagctgaatatctagtggaagcccgggaactatttgatgagatgttgcagaaaggacttactcctgatgcttatgcttacacagctcttataaatggatattgtagccaaggggaaatatcaaaggctgaagatcttttgcaagaaatgattgacaagggaatagaaccagatgaattgaccttttcagtattaaatcagagttccttgaggtctaggaagattcatctatgtgcatgattccctctgtggtaccatgtttagtaaattctttctactgaggactaggtgatgcttttatcaatcattagttaattggatttttctcttctctgcttataaaattggtcacaagttaatcttatcagcagtatatacaattctctgcaagtgtttctacacttgacagggaactaagtagcaacaattgtgaaatatactgggcatagcttgtgagtctgatcaagtaatttatgattttcaggaggtcaactttgctgatgaagaactttctgttgaaatccgcaaagaaaatgaggatcctgttgttgagacaaaagtcaagagcatttcagataccaacattaagaggttgtgcatcctacatctcagtctgcttttcaagcaaacctccttgcaaatctctttgagtcctcatgcaatagatggccttgttaaaggattggaggccaatcaacgtctagtaggtgacttgaccctagcaacccttgaggacagttgaactcagttcaggtactagtattttatcacagtatttgttccttaagaggtattttttttagggtaggggatatggtatactctgtcaattctgcactattcagccaattttcaatattgagtagtttcaagcgtgctcacaaaatagaggacgacgctcattcaggttgcatagatcgtatttttgcttcattaaatgtatccactcacattattttattagtatattctatatattcctgcctaaacctgcttcatggatttctttttcctacttggccttattttgttggattaaaagcagagcagcgcacttgtcatggtctccttttttactGggggtttgatctcttttgtcagcacaggctctgattttacctcctagacattcaaaataggaactctcttcagttccagttccagatactgttcctcaagaacacaggtactaattgatgaagtatcctctaaaagatatgttaaatatagtgctttttcatgttgccattcctaatttcattcattccttgttatgttgtgttctctaggtccaaattccacttaaggttgtgactctctgtgcaagtagagatgtgatttgtcaaatttggaactgcactagtaattgtcttatctcatcatgtttttctgagtgtccaaatttttaaccttttcttttccttcagaaggtaacagactttgcttgtatccaggttaatgtcaaactttgattcccttttgtattgaattaattcatggaacctacaaatcttccacttgaagatttttcctgcctggaattctggaaagcattagctgctcagtctatgaaagtttaagatgtggtaaggtttcagttctgttgtggataactagtgagctgtgaaggaatacattttttcatgaaatgtagaattggataatctcccctcatggttttgcttgtcttttcttgttactgatgatttagtgtctctgttagattgttactattgccttccagcataatggatatagcaagtatgtttagctggaattggatagtaatgttgtgctctattaaaaacaaaggaataatggggcggattgcccttaagtttctggtttctctgcgtggtcgaggctctgattggcgactttggtgggcaaaacccttctctaatatccttattaagtttccaaagtgtgtatacaacctttatgtactaggtagcataataattaggaaatctaacacaaactaggaatatcaaatagaatacataaatcaagctaggactagaattattaacatatctaacacacccagccaatgcttcctgcacctatggtatttgatcccataacatccataacagataacctgtatgtaaatggaatattgcaaatcatgagtcctttactgacagcaattgtctaggagaaaattctagttagtgtagcagaaaattaggtgcctctttgccagcaaattcgacctttgatgccatcagtgttggtgtagcagaaataatgtcatcaatgttcaatgcacagtctcagttcaatgtaggtcaaatcaaaacagatttacaagacagatgtcaacttcagttcgaaatttgattaaagcttgttacagttctttttataaagtaagttaatggctacgagaaaacagaagttgaccgctgttatttttgccatgcaggagttcaccaaagagtctttaattaatctaattccgtctacattggaagccataattccttcagaagtacctgtcacaatggcagcacaatgaaaagaggaaaacaaagcatcctgctagcaaaacgacttgtggctgaagaacaatgatgaagcaaggggtgacgcagaagtatttattttacttttggccgggttataacttataagtcccttgatcgctgcaggttataagctctgggaatcctcattgccctaggtctagtgttgaatctatgtagttttttatgtagttttttcaaccaaaatggatcttgaagtttgctgtttatgtgtaattacgatttgtaccaacaagattagaatgtttagctatatgccttggattgattaactaggctcTtttttttttttctcattcaagtgttcaatgaaatgtatggttctctagcttttcttttgtttcaaaatccttagttttttggggcttgtgtgtagatggcagctgtatctttcctgtatataaagctatggttgtagaaattacagggcgtattataaattattataggatgtattatatttgatggttaag
More
|
||||||||||
| CDS seq | atggttctcacagcttataatgaaatgaagtgctttcagctgactcccgatgtttatacatttgccatagtcactaggtcactttttcaagcaaagaaagtggacgaggctttgcaagtttggtccgagatgactgaaatgggagtgaaaccagatgcacgtgggtactcgtcatttctaattggtctgtgtgattgcggaaaatatgatttagcttatgttattctgcaagagattaatagggagaaggttcctgttgaggccatggcttataacatggtaatggatggactatgcaaagaaatgagattggatgaggcagaaaagctcttggaaaacaaggccagacaaggatccaaccctgatgtatatggttatagctatctgattcggagttattgcaaaatgggcaacctaataaaggctgtggatcattatgaagccatggtttctcatggtattgagacaaattgccacattgtaagttaccttctgcaatgcttcaggaagttaggcatgacatctgaagtaatcgcgtatttcctgaaatttaaagattcagggcttcatcttgacaaggtgatttataacatttctatggatacttattgcaagaatgggaacatgaacgaggcagttaagctactgaatgaaatgaagtgtgggggtttgacacctgacaaaattcactacacatgcctaatcaatggttactgtttgaagggagaaatgcaaaatgcacagcaggtatttgaggaaatgctgaaggccaatattgagccagatatagttacatataacatattggctagtgggttttgcaagagcggtcttgttatggaggtgtttgatcttctagaccgtatggcagatcaaggtttggagcctaattcactcacctacggtatagcaattgttggattttgtagaggaggcaaccttagtgaagcagaggttctatttaatgtagtagaagaaaaaggaattgatcatatcgaagtgatgtacagttcgatggtttgtggctatttgctttcaggctggactgatcatgcttacatgctttttgtaagggttgctcgacaaggaaatcttgtggatcatttttcatgttctaagttgataaatgacctctgtagagttggaaatgtccagggggcttcaaatgtttgtaagattatgttagaacataatgttgtacctgatgtgatttcatatagcaaactcatatcaatctattgtcagaatggagatatggacaaagctcacttatggttccatgatatggttcagcgaggactttctattgatgttattgtatacactatactgatgaatggttactgcaaggctggtcgtctgcaagaagcttgtcaattgtttgttcaaatgacaaacttgggcataaagcctgatgtgattgcatatacagttctactggatggtcacttaaaggagacccttcagcaaggttgggaggggattgctaaagagagaaggagctttcttcttagagcgaatcataacaagttattaagctccatgaaagacatgcaaattgaacctgatgtaccctgttacacggtgttgattgatggaaagtgcaaagctgaatatctagtggaagcccgggaactatttgatgagatgttgcagaaaggacttactcctgatgcttatgcttacacagctcttataaatggatattgtagccaaggggaaatatcaaaggctgaagatcttttgcaagaaatgattgacaagggaatagaaccagatgaattgaccttttcagaggtcaactttgctgatgaagaactttctgttgaaatccgcaaagaaaatgaggatcctgttgttgagacaaaagtcaagagcatttcagataccaacattaagaggttgtgcatcctacatctcagtctgcttttcaagcaaacctccttgcaaatctctttgagtcctcatgcaatagatggccttgttaaaggattggaggccaatcaacgtctagtaggtgacttgaccctagcaacccttgaggacagttga
More
|
||||||||||
| Protein seq | MVLTAYNEMKCFQLTPDVYTFAIVTRSLFQAKKVDEALQVWSEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNLIKAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNISMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSEVNFADEELSVEIRKENEDPVVETKVKSISDTNIKRLCILHLSLLFKQTSLQISLSPHAIDGLVKGLEANQRLVGDLTLATLEDS |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At2g26790, mitochondrial [UniProtKB/Swiss-Prot:O81028] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0022180 | OsLaMu_11g0022180.02 | Chr11 | 28240089 | 28247545 | + | NAM | ||
| CDS seq | atggttctcacagcttataatgaaatgaagtgctttcagctgactcccgatgtttatacatttgccatagtcactaggtcactttttcaagcaaagaaagtggacgaggctttgcaagtttggtccgagatgactgaaatgggagtgaaaccagatgcacgtgggtactcgtcatttctaattggtctgtgtgattgcggaaaatatgatttagcttatgttattctgcaagagattaatagggagaaggttcctgttgaggccatggcttataacatggtaatggatggactatgcaaagaaatgagattggatgaggcagaaaagctcttggaaaacaaggccagacaaggatccaaccctgatgtatatggttatagctatctgattcggagttattgcaaaatgggcaacctaataaaggctgtggatcattatgaagccatggtttctcatggtattgagacaaattgccacattgtaagttaccttctgcaatgcttcaggaagttaggcatgacatctgaagtaatcgcgtatttcctgaaatttaaagattcagggcttcatcttgacaaggtgatttataacatttctatggatacttattgcaagaatgggaacatgaacgaggcagttaagctactgaatgaaatgaagtgtgggggtttgacacctgacaaaattcactacacatgcctaatcaatggttactgtttgaagggagaaatgcaaaatgcacagcaggtatttgaggaaatgctgaaggccaatattgagccagatatagttacatataacatattggctagtgggttttgcaagagcggtcttgttatggaggtgtttgatcttctagaccgtatggcagatcaaggtttggagcctaattcactcacctacggtatagcaattgttggattttgtagaggaggcaaccttagtgaagcagaggttctatttaatgtagtagaagaaaaaggaattgatcatatcgaagtgatgtacagttcgatggtttgtggctatttgctttcaggctggactgatcatgcttacatgctttttgtaagggttgctcgacaaggaaatcttgtggatcatttttcatgttctaagttgataaatgacctctgtagagttggaaatgtccagggggcttcaaatgtttgtaagattatgttagaacataatgttgtacctgatgtgatttcatatagcaaactcatatcaatctattgtcagaatggagatatggacaaagctcacttatggttccatgatatggttcagcgaggactttctattgatgttattgtatacactatactgatgaatggttactgcaaggctggtcgtctgcaagaagcttgtcaattgtttgttcaaatgacaaacttgggcataaagcctgatgtgattgcatatacagttctactggatggtcacttaaaggagacccttcagcaaggttgggaggggattgctaaagagagaaggagctttcttcttagagcgaatcataacaagttattaagctccatgaaagacatgcaaattgaacctgatgtaccctgttacacggtgttgattgatggaaagtgcaaagctgaatatctagtggaagcccgggaactatttgatgagatgttgcagaaaggacttactcctgatgcttatgcttacacagctcttataaatggatattgtagccaaggggaaatatcaaaggctgaagatcttttgcaagaaatgattgacaagggaatagaaccagatgaattgaccttttcagaggtcaactttgctgatgaagaactttctgttgaaatccgcaaagaaaatgaggatcctgttgttgagacaaaagtcaagagcatttcagataccaacattaagaggttgtgcatcctacatctcagtctgcttttcaagcaaacctccttgcaaatctctttgagtcctcatgcaatagatggccttgttaaaggattggaggccaatcaacgtctagtaggtgacttgaccctagcaacccttgaggacagttga
More
|
|||||||
| Protein seq | MVLTAYNEMKCFQLTPDVYTFAIVTRSLFQAKKVDEALQVWSEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNLIKAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNISMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSEVNFADEELSVEIRKENEDPVVETKVKSISDTNIKRLCILHLSLLFKQTSLQISLSPHAIDGLVKGLEANQRLVGDLTLATLEDS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0022180 | OsLaMu_11g0022180.01 | Chr11 | 28240089 | 28247545 | + | NAM | ||
| CDS seq | atggttctcacagcttataatgaaatgaagtgctttcagctgactcccgatgtttatacatttgccatagtcactaggtcactttttcaagcaaagaaagtggacgaggctttgcaagtttggtccgagatgactgaaatgggagtgaaaccagatgcacgtgggtactcgtcatttctaattggtctgtgtgattgcggaaaatatgatttagcttatgttattctgcaagagattaatagggagaaggttcctgttgaggccatggcttataacatggtaatggatggactatgcaaagaaatgagattggatgaggcagaaaagctcttggaaaacaaggccagacaaggatccaaccctgatgtatatggttatagctatctgattcggagttattgcaaaatgggcaacctaataaaggctgtggatcattatgaagccatggtttctcatggtattgagacaaattgccacattgtaagttaccttctgcaatgcttcaggaagttaggcatgacatctgaagtaatcgcgtatttcctgaaatttaaagattcagggcttcatcttgacaaggtgatttataacatttctatggatacttattgcaagaatgggaacatgaacgaggcagttaagctactgaatgaaatgaagtgtgggggtttgacacctgacaaaattcactacacatgcctaatcaatggttactgtttgaagggagaaatgcaaaatgcacagcaggtatttgaggaaatgctgaaggccaatattgagccagatatagttacatataacatattggctagtgggttttgcaagagcggtcttgttatggaggtgtttgatcttctagaccgtatggcagatcaaggtttggagcctaattcactcacctacggtatagcaattgttggattttgtagaggaggcaaccttagtgaagcagaggttctatttaatgtagtagaagaaaaaggaattgatcatatcgaagtgatgtacagttcgatggtttgtggctatttgctttcaggctggactgatcatgcttacatgctttttgtaagggttgctcgacaaggaaatcttgtggatcatttttcatgttctaagttgataaatgacctctgtagagttggaaatgtccagggggcttcaaatgtttgtaagattatgttagaacataatgttgtacctgatgtgatttcatatagcaaactcatatcaatctattgtcagaatggagatatggacaaagctcacttatggttccatgatatggttcagcgaggactttctattgatgttattgtatacactatactgatgaatggttactgcaaggctggtcgtctgcaagaagcttgtcaattgtttgttcaaatgacaaacttgggcataaagcctgatgtgattgcatatacagttctactggatggtcacttaaaggagacccttcagcaaggttgggaggggattgctaaagagagaaggagctttcttcttagagcgaatcataacaagttattaagctccatgaaagacatgcaaattgaacctgatgtaccctgttacacggtgttgattgatggaaagtgcaaagctgaatatctagtggaagcccgggaactatttgatgagatgttgcagaaaggacttactcctgatgcttatgcttacacagctcttataaatggatattgtagccaaggggaaatatcaaaggctgaagatcttttgcaagaaatgattgacaagggaatagaaccagatgaattgaccttttcagaggtcaactttgctgatgaagaactttctgttgaaatccgcaaagaaaatgaggatcctgttgttgagacaaaagtcaagagcatttcagataccaacattaagaggttgtgcatcctacatctcagtctgcttttcaagcaaacctccttgcaaatctctttgagtcctcatgcaatagatggccttgttaaaggattggaggccaatcaacgtctagtaggtgacttgaccctagcaacccttgaggacagttga
More
|
|||||||
| Protein seq | MVLTAYNEMKCFQLTPDVYTFAIVTRSLFQAKKVDEALQVWSEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPDVYGYSYLIRSYCKMGNLIKAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNISMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLINDLCRVGNVQGASNVCKIMLEHNVVPDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSEVNFADEELSVEIRKENEDPVVETKVKSISDTNIKRLCILHLSLLFKQTSLQISLSPHAIDGLVKGLEANQRLVGDLTLATLEDS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr11 | 28245273 | 28245627 | + | OsLaMu_11g0022180.01 | OsLaMu_11g0022180.01,OsLaMu_11g0022180.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.359254 | 3.989945 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0659400 | RBH | 0.600387 | 0.810265 | 1.270833 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g43800 | RBH | 0.523212 | 0.631294 | 0.283912 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0659400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0022700 | RBH | 0.513975 | 5.693632 | 3.878126 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0022740 | RBH | 0.0 | 0.0 | 1.275325 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022470 | RBH | 2.110321 | 1.263810 | 9.463819 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021990 | RBH | 0.176679 | 0.205330 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022360 | RBH | 6.131116 | 7.946363 | 12.328282 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0393100 | RBH | 1.5581145 | 5.6513265 | 3.255804 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023320 | RBH | 0.255732 | 0.321132 | 0.670200 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0416000 | RBH | 1.9720375 | 7.572396 | 9.892868 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022840 | RBH | 0.062815 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023000 | RBH | 0.242106 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022680 | RBH | 1.653934 | 6.520339 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022140 | RBH | 0.736643 | 0.0 | 0.292249 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022280 | RBH | 0.140650 | 0.109730 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022530 | RBH | 0.665083 | 3.058009 | 1.495029 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022960 | RBH | 0.000000 | 7.055698 | 3.055171 |
