Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0019800 | OGI:11068250 | 13/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:25651555-25652813 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtttccacagggatacctgtttgacaaggatcattttaccatgaaatggttagaggaagggttggttggtgttcctctagatctaacagttctcgatttcgagttctgggacaatcacatttctcgaatcatcgaagaagcaaatatgtctttcactgagataatcaacaagaacaccttcagcccggcagcagaaaattgcatactcaatcttgttgaagacgagccatgccagtggcaggtaaatcctttgatgctgaagtttcttacctccaaggcagcagagaagggtcttggttttgccagcacaactctggtctcagcaacaagctgtctcaacacagctcagatagcacagcgcctagctctccaccatcctgatccgcagctcgcagcaatgctgcaacatatggatctgtctcatactcgttctctactcatcacaggtgcaatcaaccaaacaacaaacccactggacagagttgcctatctggtggtgttggatcttgaaggttgggagaatctgaaggatggtgacatgctgcagatatgcaaaatgtttatgctgaggtatctgagcgttagacgcactgggatcagcaagctcccaccacagatcaaggagctgcgcattctgagggcattggatgtcagttgcacccacataagtgagctcccatcagaattgcgtgagctacagtggttgtgcatgctggacctaagaagtacacagataggtcagttgcccgagcacctcgggaggctattggacagtttgagaattcttctcattggtgggaatgattaactccagtgaaacaactgtagtaacaaagataccgcacggtctcttggaacatctttatctgtacacactggcaattgtcgatttaagtgaatgccctgcaagcttcctgcaggatctcatgtatcataggcagttggaggtgcttgcaataatctggtcctctcaccaatgcactcgtgaagcctacagaaatgctctactgtcattcatccgagaattggagaatctcagatctctcaccattcaccgtggacttggatgttccatggatttcttggattctctatcttgtccacctaggcgcccgtagaaaattcaagataacaaccgaaaggtttgtcaaagttccccaatggatcggaggtctcgagcatcttgctttcttgcatatcacactctgtaaacttgagtcaaatgatgtcaagatcctcgggcacttgcagggttga
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| CDS seq | atgtttccacagggatacctgtttgacaaggatcattttaccatgaaatggttagaggaagggttggttggtgttcctctagatctaacagttctcgatttcgagttctgggacaatcacatttctcgaatcatcgaagaagcaaatatgtctttcactgagataatcaacaagaacaccttcagcccggcagcagaaaattgcatactcaatcttgttgaagacgagccatgccagtggcaggtaaatcctttgatgctgaagtttcttacctccaaggcagcagagaagggtcttggttttgccagcacaactctggtctcagcaacaagctgtctcaacacagctcagatagcacagcgcctagctctccaccatcctgatccgcagctcgcagcaatgctgcaacatatggatctgtctcatactcgttctctactcatcacaggtgcaatcaaccaaacaacaaacccactggacagagttgcctatctggtggtgttggatcttgaaggttgggagaatctgaaggatggtgacatgctgcagatatgcaaaatgtttatgctgaggtatctgagcgttagacgcactgggatcagcaagctcccaccacagatcaaggagctgcgcattctgagggcattggatgtcagttgcacccacataagtgagctcccatcagaattgcgtgagctacagtggttgtgcatgctggacctaagaagtacacagataggtcagttgcccgagcacctcgggaggctattggacagtttgagaattcttctcattgtaacaaagataccgcacggtctcttggaacatctttatctgtacacactggcaattgtcgatttaagtgaatgccctgcaagcttcctgcaggatctcatgtatcataggcagttggaggtgcttgcaataatctggtcctctcaccaatgcactcgtgaagcctacagaaatgctctactgtcattcatccgagaattggagaatctcagatctctcaccattcaccgtggacttggatgcgcccgtagaaaattcaagataacaaccgaaaggtttgtcaaagttccccaatggatcggaggtctcgagcatcttgctttcttgcatatcacactctgtaaacttgagtcaaatgatgtcaagatcctcgggcacttgcagggttga
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| Protein seq | MFPQGYLFDKDHFTMKWLEEGLVGVPLDLTVLDFEFWDNHISRIIEEANMSFTEIINKNTFSPAAENCILNLVEDEPCQWQVNPLMLKFLTSKAAEKGLGFASTTLVSATSCLNTAQIAQRLALHHPDPQLAAMLQHMDLSHTRSLLITGAINQTTNPLDRVAYLVVLDLEGWENLKDGDMLQICKMFMLRYLSVRRTGISKLPPQIKELRILRALDVSCTHISELPSELRELQWLCMLDLRSTQIGQLPEHLGRLLDSLRILLIVTKIPHGLLEHLYLYTLAIVDLSECPASFLQDLMYHRQLEVLAIIWSSHQCTREAYRNALLSFIRELENLRSLTIHRGLGCARRKFKITTERFVKVPQWIGGLEHLAFLHITLCKLESNDVKILGHLQG |
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| Function | Disease resistance protein PIK5-NP [UniProtKB/Swiss-Prot:Q2QZF2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0019800 | OsLaMu_11g0019800.01 | Chr11 | 25651555 | 25652813 | + | NAM | ||
| CDS seq | atgtttccacagggatacctgtttgacaaggatcattttaccatgaaatggttagaggaagggttggttggtgttcctctagatctaacagttctcgatttcgagttctgggacaatcacatttctcgaatcatcgaagaagcaaatatgtctttcactgagataatcaacaagaacaccttcagcccggcagcagaaaattgcatactcaatcttgttgaagacgagccatgccagtggcaggtaaatcctttgatgctgaagtttcttacctccaaggcagcagagaagggtcttggttttgccagcacaactctggtctcagcaacaagctgtctcaacacagctcagatagcacagcgcctagctctccaccatcctgatccgcagctcgcagcaatgctgcaacatatggatctgtctcatactcgttctctactcatcacaggtgcaatcaaccaaacaacaaacccactggacagagttgcctatctggtggtgttggatcttgaaggttgggagaatctgaaggatggtgacatgctgcagatatgcaaaatgtttatgctgaggtatctgagcgttagacgcactgggatcagcaagctcccaccacagatcaaggagctgcgcattctgagggcattggatgtcagttgcacccacataagtgagctcccatcagaattgcgtgagctacagtggttgtgcatgctggacctaagaagtacacagataggtcagttgcccgagcacctcgggaggctattggacagtttgagaattcttctcattgtaacaaagataccgcacggtctcttggaacatctttatctgtacacactggcaattgtcgatttaagtgaatgccctgcaagcttcctgcaggatctcatgtatcataggcagttggaggtgcttgcaataatctggtcctctcaccaatgcactcgtgaagcctacagaaatgctctactgtcattcatccgagaattggagaatctcagatctctcaccattcaccgtggacttggatgcgcccgtagaaaattcaagataacaaccgaaaggtttgtcaaagttccccaatggatcggaggtctcgagcatcttgctttcttgcatatcacactctgtaaacttgagtcaaatgatgtcaagatcctcgggcacttgcagggttga
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| Protein seq | MFPQGYLFDKDHFTMKWLEEGLVGVPLDLTVLDFEFWDNHISRIIEEANMSFTEIINKNTFSPAAENCILNLVEDEPCQWQVNPLMLKFLTSKAAEKGLGFASTTLVSATSCLNTAQIAQRLALHHPDPQLAAMLQHMDLSHTRSLLITGAINQTTNPLDRVAYLVVLDLEGWENLKDGDMLQICKMFMLRYLSVRRTGISKLPPQIKELRILRALDVSCTHISELPSELRELQWLCMLDLRSTQIGQLPEHLGRLLDSLRILLIVTKIPHGLLEHLYLYTLAIVDLSECPASFLQDLMYHRQLEVLAIIWSSHQCTREAYRNALLSFIRELENLRSLTIHRGLGCARRKFKITTERFVKVPQWIGGLEHLAFLHITLCKLESNDVKILGHLQG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.182265 | 1.170183 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0605100 | SBH | 3.138117 | 2.327258 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g39190 | SBH | 2.111905 | 0.958553 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0605100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019950 | RBH | 0.0 | 0.000000 | 1.872850 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0020100 | RBH | 0.000000 | 0.0 | 0.241597 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019870 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019270 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019830 | SBH | 0.187203 | 0.0 | 0.202211 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0358800 | RBH | 0.483272 | 0.908881 | 0.2840685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020410 | RBH | 0.0 | 0.0 | 0.085035 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0373900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020250 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020300 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019880 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0019690 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0019840 | RBH | 0.112088 | 6.849645 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019730 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020120 | RBH | 0.0 | 0.0 | 0.0 |
