Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0019650 | OGI:11063750 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:25475980-25479903 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagctcgtcgtcggcgcgtcgagcggcgccgtgaagtccctggtcagcaagctgggcagcctcctcgcgcaggagtacaccctggtcgccggcgtccacgacgacatccagtacatcaacgacgaggtggccagcatgcaggccttcctcagcaagctcaagcgacgacgggacgttgaccacgacgagcagcgtcaggactggatgaagcaggtgcgcgaggtggcctacgacatcgaggactgcgtcgacgatgtcggctaccgcctcggccgcgagccccgggggagcggcacggccatctccttccaaagggcgtggtaccttctcaccaccctctaccagcgccgccgcatcgccgccgagatcggcaacctcaagctccgggcgcagcatgtcagcgagcgccgcaccaggtacggggtggagaacctttacctcccagctggtggcggcagcaacgacaagtccagcgtcggagctgacgttcccagagaccgtccagctcctcttccccggctgattggcaccatggagcctgtaggcatggaggatgccatgaaagagctcgagcactggttcgtgaaggagccaaagcagatccatactcacactagtacagagaccgctgtcagcaatgagcgaagcactcagcataacactcagaagcagatcaatttcatcgccatcgtcggatttgggggccttggcaagaccacgctggcgttcgcgatgtaccacaagtttggacacgaatttgattgtagagcatccgttctcgcctcgcagaagttcgatctccggacggttctgatagaccttgtaaggcagttccatgaaaagcatgccggcacttctcaggatgccctccacggaatcgagaaagagggggatgaagagctcaagaagaagctcgccgatcaattaaaaaataagaggtattattttggcttagctatttctatctatttcattcatacttccgtaagcatgctcatctacatttctagttcatccttgattggtctcactaggttttagagtagtaatttaatagcatactcaatttggactataatataactactgttttggggaacggctactttctccggtcacattgttttggatacaatcggctaaaaaaaaaactcaattttgactattattttattgtatttcatttatataatcaaaaaatttatatctatactcttttaaaagaaggcagtgatgatgacggtgaatctatcactacacctacttcttaatattaaaacaactaaatataaatggatagctacatataaaattaaattattaaagggaaatttgcaaatttgccactgttttttttttcaatttttaaggatgccacttgaataacagttctagtgataattttgtaattttttagtgatagccttataataacgattcaaaccagtgacaaatttgcaattgtcctattaaattaaggtgaggcatggcgtacagctggttcctattttatgttttttggtattttcttctagttttcaatcggtgcttgctgtctcacactcaggatcctggccgtcactgttgcggctaggtaggggctgctgcctcaacaacaatgttgttgtaccctatgttaatggaaaataaatacgaaatattagtctccaaattggaaaagttcgactatatatttgtgtctggaatgagtatcacaatacgttatttagaactacttacttacttccaaacaatggttgaagcaggtaccatatcttgatagatgacatatggtctgtgtcagcatgggaaagtattagggattcattacccaagaatgataagggtagctgcgtagtagtgactacaaggtttaactcagtagctgaagcctgccgccgtcaaaatggtcatgtgcacaagctcaaacagttcgatctagagagctcctacaatttgtttcttcagataatatctgcaaatgatctgtgtcccattagacccattaatggtagcattatcatgagggtatgtgggggtctgcccttggccattgtagtagtagcagggctgattgctagtaaactgaaatcaaagatagaccagacattggatcagcatttggttgaagtagatgaggctttaagtgcagagttgggaaacaatctcaccactgaaggagtggcgcaaataattaaccactgttacaaaaatctgccatctgatcttaagacatgcttgctgtacttgagcacatttccaaagggccgcaatattagcaggaagcatttgataagaagatggattgctgaaggattcattactgaagagcatgggaagactgccgatgaagttgcagaagacagcctcaatgaactcattggcaggaatttggtaaagcctatcaacaacaacagcaacggcaaggtgaagagctgtcaaattcatgacatggtcctacagtacattgtctccaagtctagcgatgagaatttcatcaccgttattggtggccactggcagacggcatttccaagctacaaggtacggcggttgtctgtccataaaaatggtcaacaagaaactgaaatgatagagaagatgaagttgtctcatgtccgatccttgacagtgttggaaagcttcggtgctcttcattctagtatgctcaagttccagatactgcaggtgttggaccttgatggctgcaaggacttgtcccactcccatcagctcaagaaaatatgcaacatgtatcagttgaagtacctgggcctgcggcggacagatattggcaagatcccaaagaatatagggaggctggagtacttggaggtacttgacattagggagacaaatgtcacaaagttgcctacatcatttgcgaagcttcagcgaatgacccatctacttgctggcaacaaaagcaagcagacagcattgacattaactgaggaaatcacaaagatcgtagctctagaaacactttctgggattgagatcagtggaagctcaactttggaagaagaccggaaacagtcaccagatatggccatcagacactctacaaccaccagagccgaggacagagacagcaccgctttgcatggtccccaaaaagaagctagcaaagtggactttccaaaacagctgcgtcctcttgaagccttggagaagctcaccaatcttaagaaacttgccatttacaagcttgtaaagttccaagtaaaggacgatgagttactgctctctgctattgagcatttgagcagttgttccctcaagtttcttgcgattgatgacaatttcacaggtttccttgacagctcactgagttcctcgcaagcaccaccagaacacctgtacacccttgagctttctggcatgttgtctaaagtgcctggatggattgaccgcctgcacaaccttgagaagcttactctgtccttgacttcacttacgacagatactttggtgactcttagtgggcttcctgagcttttctctcttattttttcactcaatgaagatgaaccaaaggatatttcaaatgtcctcaaaattgtgcataagaatacattggagtcaggtggtaaaatctttgtgacggatgggggttttacaaagctgaggttgctgcgttttacagcaccagcgctaccacctctgagcttcctagaaggggcgatgccaaagcttcagaggcttgagctgaggttcagaatcattgagtgtgtgtacggcctggaaaaccttccaagtctccaacaggtatttatgacatttagcagccaggcacctgaagatgccaaagagaaggtctctcagatcaaaggacaagcaagcaatattcgaaaggataatgcccccgacattattgtggtgatagacgagtacaatgaattatcaaaagaacaatag
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| CDS seq | atggagctcgtcgtcggcgcgtcgagcggcgccgtgaagtccctggtcagcaagctgggcagcctcctcgcgcaggagtacaccctggtcgccggcgtccacgacgacatccagtacatcaacgacgaggtggccagcatgcaggccttcctcagcaagctcaagcgacgacgggacgttgaccacgacgagcagcgtcaggactggatgaagcaggtgcgcgaggtggcctacgacatcgaggactgcgtcgacgatgtcggctaccgcctcggccgcgagccccgggggagcggcacggccatctccttccaaagggcgtggtaccttctcaccaccctctaccagcgccgccgcatcgccgccgagatcggcaacctcaagctccgggcgcagcatgtcagcgagcgccgcaccaggtacggggtggagaacctttacctcccagctggtggcggcagcaacgacaagtccagcgtcggagctgacgttcccagagaccgtccagctcctcttccccggctgattggcaccatggagcctgtaggcatggaggatgccatgaaagagctcgagcactggttcgtgaaggagccaaagcagatccatactcacactagtacagagaccgctgtcagcaatgagcgaagcactcagcataacactcagaagcagatcaatttcatcgccatcgtcggatttgggggccttggcaagaccacgctggcgttcgcgatgtaccacaagtttggacacgaatttgattgtagagcatccgttctcgcctcgcagaagttcgatctccggacggttctgatagaccttgtaaggcagttccatgaaaagcatgccggcacttctcaggatgccctccacggaatcgagaaagagggggatgaagagctcaagaagaagctcgccgatcaattaaaaaataagaggtaccatatcttgatagatgacatatggtctgtgtcagcatgggaaagtattagggattcattacccaagaatgataagggtagctgcgtagtagtgactacaaggtttaactcagtagctgaagcctgccgccgtcaaaatggtcatgtgcacaagctcaaacagttcgatctagagagctcctacaatttgtttcttcagataatatctgcaaatgatctgtgtcccattagacccattaatggtagcattatcatgagggtatgtgggggtctgcccttggccattgtagtagtagcagggctgattgctagtaaactgaaatcaaagatagaccagacattggatcagcatttggttgaagtagatgaggctttaagtgcagagttgggaaacaatctcaccactgaaggagtggcgcaaataattaaccactgttacaaaaatctgccatctgatcttaagacatgcttgctgtacttgagcacatttccaaagggccgcaatattagcaggaagcatttgataagaagatggattgctgaaggattcattactgaagagcatgggaagactgccgatgaagttgcagaagacagcctcaatgaactcattggcaggaatttggtaaagcctatcaacaacaacagcaacggcaaggtgaagagctgtcaaattcatgacatggtcctacagtacattgtctccaagtctagcgatgagaatttcatcaccgttattggtggccactggcagacggcatttccaagctacaaggtacggcggttgtctgtccataaaaatggtcaacaagaaactgaaatgatagagaagatgaagttgtctcatgtccgatccttgacagtgttggaaagcttcggtgctcttcattctagtatgctcaagttccagatactgcaggtgttggaccttgatggctgcaaggacttgtcccactcccatcagctcaagaaaatatgcaacatgtatcagttgaagtacctgggcctgcggcggacagatattggcaagatcccaaagaatatagggaggctggagtacttggaggtacttgacattagggagacaaatgtcacaaagttgcctacatcatttgcgaagcttcagcgaatgacccatctacttgctggcaacaaaagcaagcagacagcattgacattaactgaggaaatcacaaagatcgtagctctagaaacactttctgggattgagatcagtggaagctcaactttggaagaagaccggaaacagtcaccagatatggccatcagacactctacaaccaccagagccgaggacagagacagcaccgctttgcatggtccccaaaaagaagctagcaaagtggactttccaaaacagctgcgtcctcttgaagccttggagaagctcaccaatcttaagaaacttgccatttacaagcttgtaaagttccaagtaaaggacgatgagttactgctctctgctattgagcatttgagcagttgttccctcaagtttcttgcgattgatgacaatttcacaggtttccttgacagctcactgagttcctcgcaagcaccaccagaacacctgtacacccttgagctttctggcatgttgtctaaagtgcctggatggattgaccgcctgcacaaccttgagaagcttactctgtccttgacttcacttacgacagatactttggtgactcttagtgggcttcctgagcttttctctcttattttttcactcaatgaagatgaaccaaaggatatttcaaatgtcctcaaaattgtgcataagaatacattggagtcaggtggtaaaatctttgtgacggatgggggttttacaaagctgaggttgctgcgttttacagcaccagcgctaccacctctgagcttcctagaaggggcgatgccaaagcttcagaggcttgagctgaggttcagaatcattgagtgtgtgtacggcctggaaaaccttccaagtctccaacaggtatttatgacatttagcagccaggcacctgaagatgccaaagagaaggtctctcagatcaaaggacaagcaagcaatattcgaaaggataatgcccccgacattattgtggtgatagacgagtacaatgaattatcaaaagaacaatag
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| Protein seq | MELVVGASSGAVKSLVSKLGSLLAQEYTLVAGVHDDIQYINDEVASMQAFLSKLKRRRDVDHDEQRQDWMKQVREVAYDIEDCVDDVGYRLGREPRGSGTAISFQRAWYLLTTLYQRRRIAAEIGNLKLRAQHVSERRTRYGVENLYLPAGGGSNDKSSVGADVPRDRPAPLPRLIGTMEPVGMEDAMKELEHWFVKEPKQIHTHTSTETAVSNERSTQHNTQKQINFIAIVGFGGLGKTTLAFAMYHKFGHEFDCRASVLASQKFDLRTVLIDLVRQFHEKHAGTSQDALHGIEKEGDEELKKKLADQLKNKRYHILIDDIWSVSAWESIRDSLPKNDKGSCVVVTTRFNSVAEACRRQNGHVHKLKQFDLESSYNLFLQIISANDLCPIRPINGSIIMRVCGGLPLAIVVVAGLIASKLKSKIDQTLDQHLVEVDEALSAELGNNLTTEGVAQIINHCYKNLPSDLKTCLLYLSTFPKGRNISRKHLIRRWIAEGFITEEHGKTADEVAEDSLNELIGRNLVKPINNNSNGKVKSCQIHDMVLQYIVSKSSDENFITVIGGHWQTAFPSYKVRRLSVHKNGQQETEMIEKMKLSHVRSLTVLESFGALHSSMLKFQILQVLDLDGCKDLSHSHQLKKICNMYQLKYLGLRRTDIGKIPKNIGRLEYLEVLDIRETNVTKLPTSFAKLQRMTHLLAGNKSKQTALTLTEEITKIVALETLSGIEISGSSTLEEDRKQSPDMAIRHSTTTRAEDRDSTALHGPQKEASKVDFPKQLRPLEALEKLTNLKKLAIYKLVKFQVKDDELLLSAIEHLSSCSLKFLAIDDNFTGFLDSSLSSSQAPPEHLYTLELSGMLSKVPGWIDRLHNLEKLTLSLTSLTTDTLVTLSGLPELFSLIFSLNEDEPKDISNVLKIVHKNTLESGGKIFVTDGGFTKLRLLRFTAPALPPLSFLEGAMPKLQRLELRFRIIECVYGLENLPSLQQVFMTFSSQAPEDAKEKVSQIKGQASNIRKDNAPDIIVVIDEYNELSKEQ |
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| Function | Disease resistance protein Piks-2 [UniProtKB/Swiss-Prot:P0DO10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0019650 | OsLaMu_11g0019650.01 | Chr11 | 25475980 | 25479903 | + | NAM | ||
| CDS seq | atggagctcgtcgtcggcgcgtcgagcggcgccgtgaagtccctggtcagcaagctgggcagcctcctcgcgcaggagtacaccctggtcgccggcgtccacgacgacatccagtacatcaacgacgaggtggccagcatgcaggccttcctcagcaagctcaagcgacgacgggacgttgaccacgacgagcagcgtcaggactggatgaagcaggtgcgcgaggtggcctacgacatcgaggactgcgtcgacgatgtcggctaccgcctcggccgcgagccccgggggagcggcacggccatctccttccaaagggcgtggtaccttctcaccaccctctaccagcgccgccgcatcgccgccgagatcggcaacctcaagctccgggcgcagcatgtcagcgagcgccgcaccaggtacggggtggagaacctttacctcccagctggtggcggcagcaacgacaagtccagcgtcggagctgacgttcccagagaccgtccagctcctcttccccggctgattggcaccatggagcctgtaggcatggaggatgccatgaaagagctcgagcactggttcgtgaaggagccaaagcagatccatactcacactagtacagagaccgctgtcagcaatgagcgaagcactcagcataacactcagaagcagatcaatttcatcgccatcgtcggatttgggggccttggcaagaccacgctggcgttcgcgatgtaccacaagtttggacacgaatttgattgtagagcatccgttctcgcctcgcagaagttcgatctccggacggttctgatagaccttgtaaggcagttccatgaaaagcatgccggcacttctcaggatgccctccacggaatcgagaaagagggggatgaagagctcaagaagaagctcgccgatcaattaaaaaataagaggtaccatatcttgatagatgacatatggtctgtgtcagcatgggaaagtattagggattcattacccaagaatgataagggtagctgcgtagtagtgactacaaggtttaactcagtagctgaagcctgccgccgtcaaaatggtcatgtgcacaagctcaaacagttcgatctagagagctcctacaatttgtttcttcagataatatctgcaaatgatctgtgtcccattagacccattaatggtagcattatcatgagggtatgtgggggtctgcccttggccattgtagtagtagcagggctgattgctagtaaactgaaatcaaagatagaccagacattggatcagcatttggttgaagtagatgaggctttaagtgcagagttgggaaacaatctcaccactgaaggagtggcgcaaataattaaccactgttacaaaaatctgccatctgatcttaagacatgcttgctgtacttgagcacatttccaaagggccgcaatattagcaggaagcatttgataagaagatggattgctgaaggattcattactgaagagcatgggaagactgccgatgaagttgcagaagacagcctcaatgaactcattggcaggaatttggtaaagcctatcaacaacaacagcaacggcaaggtgaagagctgtcaaattcatgacatggtcctacagtacattgtctccaagtctagcgatgagaatttcatcaccgttattggtggccactggcagacggcatttccaagctacaaggtacggcggttgtctgtccataaaaatggtcaacaagaaactgaaatgatagagaagatgaagttgtctcatgtccgatccttgacagtgttggaaagcttcggtgctcttcattctagtatgctcaagttccagatactgcaggtgttggaccttgatggctgcaaggacttgtcccactcccatcagctcaagaaaatatgcaacatgtatcagttgaagtacctgggcctgcggcggacagatattggcaagatcccaaagaatatagggaggctggagtacttggaggtacttgacattagggagacaaatgtcacaaagttgcctacatcatttgcgaagcttcagcgaatgacccatctacttgctggcaacaaaagcaagcagacagcattgacattaactgaggaaatcacaaagatcgtagctctagaaacactttctgggattgagatcagtggaagctcaactttggaagaagaccggaaacagtcaccagatatggccatcagacactctacaaccaccagagccgaggacagagacagcaccgctttgcatggtccccaaaaagaagctagcaaagtggactttccaaaacagctgcgtcctcttgaagccttggagaagctcaccaatcttaagaaacttgccatttacaagcttgtaaagttccaagtaaaggacgatgagttactgctctctgctattgagcatttgagcagttgttccctcaagtttcttgcgattgatgacaatttcacaggtttccttgacagctcactgagttcctcgcaagcaccaccagaacacctgtacacccttgagctttctggcatgttgtctaaagtgcctggatggattgaccgcctgcacaaccttgagaagcttactctgtccttgacttcacttacgacagatactttggtgactcttagtgggcttcctgagcttttctctcttattttttcactcaatgaagatgaaccaaaggatatttcaaatgtcctcaaaattgtgcataagaatacattggagtcaggtggtaaaatctttgtgacggatgggggttttacaaagctgaggttgctgcgttttacagcaccagcgctaccacctctgagcttcctagaaggggcgatgccaaagcttcagaggcttgagctgaggttcagaatcattgagtgtgtgtacggcctggaaaaccttccaagtctccaacaggtatttatgacatttagcagccaggcacctgaagatgccaaagagaaggtctctcagatcaaaggacaagcaagcaatattcgaaaggataatgcccccgacattattgtggtgatagacgagtacaatgaattatcaaaagaacaatag
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| Protein seq | MELVVGASSGAVKSLVSKLGSLLAQEYTLVAGVHDDIQYINDEVASMQAFLSKLKRRRDVDHDEQRQDWMKQVREVAYDIEDCVDDVGYRLGREPRGSGTAISFQRAWYLLTTLYQRRRIAAEIGNLKLRAQHVSERRTRYGVENLYLPAGGGSNDKSSVGADVPRDRPAPLPRLIGTMEPVGMEDAMKELEHWFVKEPKQIHTHTSTETAVSNERSTQHNTQKQINFIAIVGFGGLGKTTLAFAMYHKFGHEFDCRASVLASQKFDLRTVLIDLVRQFHEKHAGTSQDALHGIEKEGDEELKKKLADQLKNKRYHILIDDIWSVSAWESIRDSLPKNDKGSCVVVTTRFNSVAEACRRQNGHVHKLKQFDLESSYNLFLQIISANDLCPIRPINGSIIMRVCGGLPLAIVVVAGLIASKLKSKIDQTLDQHLVEVDEALSAELGNNLTTEGVAQIINHCYKNLPSDLKTCLLYLSTFPKGRNISRKHLIRRWIAEGFITEEHGKTADEVAEDSLNELIGRNLVKPINNNSNGKVKSCQIHDMVLQYIVSKSSDENFITVIGGHWQTAFPSYKVRRLSVHKNGQQETEMIEKMKLSHVRSLTVLESFGALHSSMLKFQILQVLDLDGCKDLSHSHQLKKICNMYQLKYLGLRRTDIGKIPKNIGRLEYLEVLDIRETNVTKLPTSFAKLQRMTHLLAGNKSKQTALTLTEEITKIVALETLSGIEISGSSTLEEDRKQSPDMAIRHSTTTRAEDRDSTALHGPQKEASKVDFPKQLRPLEALEKLTNLKKLAIYKLVKFQVKDDELLLSAIEHLSSCSLKFLAIDDNFTGFLDSSLSSSQAPPEHLYTLELSGMLSKVPGWIDRLHNLEKLTLSLTSLTTDTLVTLSGLPELFSLIFSLNEDEPKDISNVLKIVHKNTLESGGKIFVTDGGFTKLRLLRFTAPALPPLSFLEGAMPKLQRLELRFRIIECVYGLENLPSLQQVFMTFSSQAPEDAKEKVSQIKGQASNIRKDNAPDIIVVIDEYNELSKEQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.038135 | 2.820818 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0606900 | SBH | 0.367631 | 0.000000 | 0.450013 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g39320 | SBH | 0.968592 | 1.189013 | 0.135217 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0606900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0019830 | SBH | 0.057990 | 0.0 | 0.193593 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0019970 | RBH | 0.000000 | 1.109139 | 0.103049 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0019730 | RBH | 0.340073 | 3.111738 | 1.133011 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0019280 | SBH | 0.000000 | 0.042257 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0019820 | RBH | 1.352501 | 0.997465 | 2.008775 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0356700 | RBH | 0.331005 | 2.836454 | 1.1120985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0020280 | RBH | 0.000000 | 0.971658 | 0.785123 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0374200 | SBH | 1.109171 | 2.394498 | 0.3459235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0020060 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0020290 | RBH | 0.023861 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0019740 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0019540 | RBH | 0.0 | 0.0 | 0.148714 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0019670 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G019760 | SBH | 0.053878 | 0.764113 | 0.759471 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0020150 | SBH | 0.750866 | 5.503851 | 2.506739 |
