Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0015520 | OGI:11056080 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:21021685-21025429 | ||||||||
| Gene Symbol | OsSTA260 | ||||||||||
| DNA seq | caatcccaacctaacaacaaaccgataaaccaataattctacagtaaaatgagaaggaaataaatttaagggattgctgcaaaaaaaatacattttcttctttgaatattttcatctcagggatctcttccattccatcccaatacatcaatctttcaaaatgtttgctcaagtcaagggttggggagttgagattcaagttggttgcacttcttagtgcaacctctgcagcctgcacctcccagagcctagcgtaacgacagtcaatccgaaaatgtacagtcttgagggaggtgagattctccaagcccatgtccaaatcactgtgaaaaacttttgtctcctttagttgaaaacaaaaggaaagcatttgaagcctctgcatggctccatgtctaaaaactagcatcattgcaggacttgtaaagttgaagttagccagacattggaatgctattgcctgaccattacctctactatgacctattatcatcaatctttcctttaaagcacctgtcacgctcaagtatagagaacaaagtgcaggcaagtccccaagaactccaagatctttttgttgtagtatcttgacaatgatcgataagtatgagagattggtgagtgatgaattgatccactttggtaggatagagaatgggctaaactcagcccacccagacaatgggttgagcttaaatatgtcttcgctttctcggcgaacaccaactgtaagtttttggagttcatgaagggtccaatctttattcaacatgaaatcaagggatatatctggagcaaaaatatggacaatttgaagtttcttcatagagcctaaacaatcaagaaattgttcctctttggtctgctcccatgtgcttatcaaaatttctagaacccgtagattgggcagatcgcttagctctttcataagacttggatacatgctggtatcaatctctgacagttgttctagacattccatattcccaatcccatttggcaactttgtccatctgtccaccataagacgcataagttgtgtaagatgtacaacagttgatggcaattcttttattcttgtccgcttaatatctaatgtttgcaaaaatcttaggtttccaatttcttttggaagcttattataatgtgtaccatgcaaccttagatacctcaggtgaaccaaattacctatattatcaatattttgactgctgcaatctcctaaatccaaggcacgcaaaactcgaaagcccgaaaggggcatcttcaaatcaataccttgccaaagtgacctcacatgggaaaatctctcggttgcatcaggtattgtaatatcatccttgctgttttgtagggataaccggtagatccttttcggtagatccgacgtcgaacactgaccatttaaaattgcaacaaaattttcttcaattgataaaccggcgataaattctagtatggtatcatgcacacgacaagcttgcgcctcagcatgcacatcaatgcatatcggttggatcaagtttctattaatgagttcatcaaagtatctctctcctttttcatatagaattgtaccttgttttggctggataaaaccttcagctatccatctccatatcaggtcatctctgtcgatgatataatcctccggaaatatactgagatacataaaacaagttttaagaggagaaggcatatcacaataactaagagatattatccagcgcatgtccttcacatcagtactactttcaagtccggtatggaaagaactgcataccgagttccagtggtcctcagtttgtgtctgcctatttgcaaataagctagcaatagtaattatagctaatggtaagccaccacatcttttcaaaattttctgagatatgcccttaagctgaggagggcatctttcattatggaatactttgtgatatagtagtttttcagagtcagcaactgaaagaggctgttgtatttgtatggtaccatcaacatcatcagaatagcaacacaactttgcaacatcaatgttgcgagtagtggtgattattttgctaccatgatcattgtcgatgagaacacattttagaagttgccatgttggtttatcccatatatcatcaataataatgaagtacctataatttcaaagtatgttagttgaagaaggattaatatttatttttcgaacgtgcaggagagctttgcattgtagtgacttagataaatggttgcatgggttacatacatatacttgtagtgatttagttgtaacctaaattgtacaaatatgataaacaataataaacatagaaagaggagtatattaaaccttaagctagaaacaatcattcgtttccacattgtcccaaacacagattagttttgggtaagtgtcactgatgtggcccactttgtaaccacatctgaacttagaacattagtacataaatttaaaaatagttggcccatgaaaaacagtgtctaaaaaatggaacataatatatgtaatgtaaatatttcaagtgcaattctagaatttttcaagtatgttctgaaaagcatttactattttaaaaattcaataatttttccagaggctgacatgtcacccagaaaacattccaattaaattgtaaccaaagttaaaaggtgaatgatttcagtagattagattgaattaatgtttggtttagaaattcaggttcatttttttccaatttccagcccagggatgcgaaattgacctttttagccactccaaagacaccttgactcagtgcattttatagatgcagatgccggggatgcaattcattttccatatctaaaacttccaaagacacccaaaaattcagtgatggtttacatacctgatatccttgagaacatccctgattttgtcgatgatttccttctcaccccaagaactgaaattttcatatttgagttggctcacttgacagagtatgctgctaagaacagccttgacgtttggcttttgagaaaccgagacgaaagcttggcattcgaattggccatggagcttctgatacacaagattagctagggttgtctttccgattcctcctggcccaacaatggcgatcagcttgagctttcgcctcatcatcactgcaccttgatctccttccatggataacagcttgatcacctcctccactgaggcgtcgacgccgacgaggcttgcgaagttcgcgtacagcgccggcagccggcggtccaccggagcgtcattgacgacggcgacgacgtggtcgtcgatcctgtacctttcccggcgcctgctcacctccgccacctccttcttgatgcgctcgatctcggcggcgatggctcggcgccggcggcgagccgagctgttcaagccgacgacgaaggagcagcacggtggtggttgtggtcgtcgtccggcggcggcggcctcacggagcaggtaggtgtcgatggcgtcctcgatgtggtaggacatgtcgcggacgtccctcgcccacagcctgacctgcccgtcgagctggtcgggcggcgccgccgccgccgacaccttctcgagggcggcgcgcatgctggtcagctcgctctcgaggtgctcgacgccgtcctcgaccgcgcgcctgctgctgtggttctcgccggcgacgaggaggaggaggtcagcgagcttggggaggagggtgttcagcgccccggtggacgcgctcaccgccgccgcctccat
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| CDS seq | atggaggcggcggcggtgagcgcgtccaccggggcgctgaacaccctcctccccaagctcgctgacctcctcctcctcgtcgccggcgagaaccacagcagcaggcgcgcggtcgaggacggcgtcgagcacctcgagagcgagctgaccagcatgcgcgccgccctcgagaaggtgtcggcggcggcggcgccgcccgaccagctcgacgggcaggtcaggctgtgggcgagggacgtccgcgacatgtcctaccacatcgaggacgccatcgacacctacctgctccgtgaggccgccgccgccggacgacgaccacaaccaccaccgtgctgctccttcgtcgtcggcttgaacagctcggctcgccgccggcgccgagccatcgccgccgagatcgagcgcatcaagaaggaggtggcggaggtgagcaggcgccgggaaaggtacaggatcgacgaccacgtcgtcgccgtcgtcaatgacgctccggtggaccgccggctgccggcgctgtacgcgaacttcgcaagcctcgtcggcgtcgacgcctcagtggaggaggtgatcaagctgttatccatggaaggagatcaaggtgcagtgatgatgaggcgaaagctcaagctgatcgccattgttgggccaggaggaatcggaaagacaaccctagctaatcttgtgtatcagaagctccatggccaattcgaatgccaagctttcgtctcggtttctcaaaagccaaacgtcaaggctgttcttagcagcatactctgtcaagtgagccaactcaaatatgaaaatttcagttcttggggtgagaaggaaatcatcgacaaaatcagggatgttctcaaggatatcaggtacttcattattattgatgatatatgggataaaccaacatggcaacttctaaaatgtgttctcatcgacaatgatcatggtagcaaaataatcaccactactcgcaacattgatgttgcaaagttgtgttgctattctgatgatgttgatggtaccatacaaatacaacagcctctttcagttgctgactctgaaaaactactatatcacaaagtattccataatgaaagatgccctcctcagcttaagggcatatctcagaaaattttgaaaagatgtggtggcttaccattagctataattactattgctagcttatttgcaaataggcagacacaaactgaggaccactggaactcggattatatcatcgacagagatgacctgatatggagatggatagctgaaggttttatccagccaaaacaaggtacaattctatatgaaaaaggagagagatactttgatgaactcattaatagaaacttgatccaaccgatatgcattgatgtgcatgctgaggcgcaagcttgtcgtgtgcatgataccatactagaatttatcgccggtttatcaattgaagaaaattttgttgcaattttaaatggtcagtgttcgacgtcggatctaccgaaaaggatctaccggttatccctacaaaacagcaaggatgatattacaatacctgatgcaaccgagagattttcccatgtgaggtcactttggcaaggtattgatttgaagatgcccctttcgggctttcgagttttgcgtgccttggatttaggagattgcagcagtcaaaatattgataatataggtaatttggttcacctgaggtatctaaggttgcatggtacacattataataagcttccaaaagaaattggaaacctaagatttttgcaaacattagatattaagcggacaagaataaaagaattgccatcaactgttgtacatcttacacaacttatgcgtcttatggtggacagatggacaaagttgccaaatgggattgggaatatggaatgtctagaacaactgtcagagattgataccagcatgtatccaagtcttatgaaagagctaagcgatctgcccaatctacgggttctagaaattttgataagcacatgggagcagaccaaagaggaacaatttcttgattgtttaggctctatgaagaaacttcaaattgtccatatttttgctccagatatatcccttgatttcatgttgaataaagattggacccttcatgaactccaaaaacttacagttggtgttcgccgagaaagcgaagacatatttaagctcaacccattgtctgggtgggctgagtttagcccattctctatcctaccaaagtggatcaattcatcactcaccaatctctcatacttatcgatcattgtcaagatactacaacaaaaagatcttggagttcttggggacttgcctgcactttgttctctatacttgagcgtgacaggtgctttaaaggaaagattgatgataataggtcatagtagaggtaatggtcaggcaatagcattccaatgtctggctaacttcaactttacaagtcctgcaatgatgctagtttttagacatggagccatgcagaggcttcaaatgctttccttttgttttcaactaaaggagacaaaagtttttcacagtgatttggacatgggcttggagaatctcacctccctcaagactgtacattttcggattgactgtcgttacgctaggctctgggaggtgcaggctgcagaggttgcactaagaagtgcaaccaacttgaatctcaactccccaacccttgacttgagcaaacattttgaaagattgatgtattgggatggaatggaagagatccctgagatgaaaatattcaaagaagaaaatgtattttttttgcagcaatcccttaaatttatttccttctcattttactgtagaattattggtttatcggtttgttgttag
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| Protein seq | MEAAAVSASTGALNTLLPKLADLLLLVAGENHSSRRAVEDGVEHLESELTSMRAALEKVSAAAAPPDQLDGQVRLWARDVRDMSYHIEDAIDTYLLREAAAAGRRPQPPPCCSFVVGLNSSARRRRRAIAAEIERIKKEVAEVSRRRERYRIDDHVVAVVNDAPVDRRLPALYANFASLVGVDASVEEVIKLLSMEGDQGAVMMRRKLKLIAIVGPGGIGKTTLANLVYQKLHGQFECQAFVSVSQKPNVKAVLSSILCQVSQLKYENFSSWGEKEIIDKIRDVLKDIRYFIIIDDIWDKPTWQLLKCVLIDNDHGSKIITTTRNIDVAKLCCYSDDVDGTIQIQQPLSVADSEKLLYHKVFHNERCPPQLKGISQKILKRCGGLPLAIITIASLFANRQTQTEDHWNSDYIIDRDDLIWRWIAEGFIQPKQGTILYEKGERYFDELINRNLIQPICIDVHAEAQACRVHDTILEFIAGLSIEENFVAILNGQCSTSDLPKRIYRLSLQNSKDDITIPDATERFSHVRSLWQGIDLKMPLSGFRVLRALDLGDCSSQNIDNIGNLVHLRYLRLHGTHYNKLPKEIGNLRFLQTLDIKRTRIKELPSTVVHLTQLMRLMVDRWTKLPNGIGNMECLEQLSEIDTSMYPSLMKELSDLPNLRVLEILISTWEQTKEEQFLDCLGSMKKLQIVHIFAPDISLDFMLNKDWTLHELQKLTVGVRRESEDIFKLNPLSGWAEFSPFSILPKWINSSLTNLSYLSIIVKILQQKDLGVLGDLPALCSLYLSVTGALKERLMIIGHSRGNGQAIAFQCLANFNFTSPAMMLVFRHGAMQRLQMLSFCFQLKETKVFHSDLDMGLENLTSLKTVHFRIDCRYARLWEVQAAEVALRSATNLNLNSPTLDLSKHFERLMYWDGMEEIPEMKIFKEENVFFLQQSLKFISFSFYCRIIGLSVCC |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0015520 | OsLaMu_11g0015520.01 | Chr11 | 21021685 | 21025429 | - | NAM | ||
| CDS seq | atggaggcggcggcggtgagcgcgtccaccggggcgctgaacaccctcctccccaagctcgctgacctcctcctcctcgtcgccggcgagaaccacagcagcaggcgcgcggtcgaggacggcgtcgagcacctcgagagcgagctgaccagcatgcgcgccgccctcgagaaggtgtcggcggcggcggcgccgcccgaccagctcgacgggcaggtcaggctgtgggcgagggacgtccgcgacatgtcctaccacatcgaggacgccatcgacacctacctgctccgtgaggccgccgccgccggacgacgaccacaaccaccaccgtgctgctccttcgtcgtcggcttgaacagctcggctcgccgccggcgccgagccatcgccgccgagatcgagcgcatcaagaaggaggtggcggaggtgagcaggcgccgggaaaggtacaggatcgacgaccacgtcgtcgccgtcgtcaatgacgctccggtggaccgccggctgccggcgctgtacgcgaacttcgcaagcctcgtcggcgtcgacgcctcagtggaggaggtgatcaagctgttatccatggaaggagatcaaggtgcagtgatgatgaggcgaaagctcaagctgatcgccattgttgggccaggaggaatcggaaagacaaccctagctaatcttgtgtatcagaagctccatggccaattcgaatgccaagctttcgtctcggtttctcaaaagccaaacgtcaaggctgttcttagcagcatactctgtcaagtgagccaactcaaatatgaaaatttcagttcttggggtgagaaggaaatcatcgacaaaatcagggatgttctcaaggatatcaggtacttcattattattgatgatatatgggataaaccaacatggcaacttctaaaatgtgttctcatcgacaatgatcatggtagcaaaataatcaccactactcgcaacattgatgttgcaaagttgtgttgctattctgatgatgttgatggtaccatacaaatacaacagcctctttcagttgctgactctgaaaaactactatatcacaaagtattccataatgaaagatgccctcctcagcttaagggcatatctcagaaaattttgaaaagatgtggtggcttaccattagctataattactattgctagcttatttgcaaataggcagacacaaactgaggaccactggaactcggattatatcatcgacagagatgacctgatatggagatggatagctgaaggttttatccagccaaaacaaggtacaattctatatgaaaaaggagagagatactttgatgaactcattaatagaaacttgatccaaccgatatgcattgatgtgcatgctgaggcgcaagcttgtcgtgtgcatgataccatactagaatttatcgccggtttatcaattgaagaaaattttgttgcaattttaaatggtcagtgttcgacgtcggatctaccgaaaaggatctaccggttatccctacaaaacagcaaggatgatattacaatacctgatgcaaccgagagattttcccatgtgaggtcactttggcaaggtattgatttgaagatgcccctttcgggctttcgagttttgcgtgccttggatttaggagattgcagcagtcaaaatattgataatataggtaatttggttcacctgaggtatctaaggttgcatggtacacattataataagcttccaaaagaaattggaaacctaagatttttgcaaacattagatattaagcggacaagaataaaagaattgccatcaactgttgtacatcttacacaacttatgcgtcttatggtggacagatggacaaagttgccaaatgggattgggaatatggaatgtctagaacaactgtcagagattgataccagcatgtatccaagtcttatgaaagagctaagcgatctgcccaatctacgggttctagaaattttgataagcacatgggagcagaccaaagaggaacaatttcttgattgtttaggctctatgaagaaacttcaaattgtccatatttttgctccagatatatcccttgatttcatgttgaataaagattggacccttcatgaactccaaaaacttacagttggtgttcgccgagaaagcgaagacatatttaagctcaacccattgtctgggtgggctgagtttagcccattctctatcctaccaaagtggatcaattcatcactcaccaatctctcatacttatcgatcattgtcaagatactacaacaaaaagatcttggagttcttggggacttgcctgcactttgttctctatacttgagcgtgacaggtgctttaaaggaaagattgatgataataggtcatagtagaggtaatggtcaggcaatagcattccaatgtctggctaacttcaactttacaagtcctgcaatgatgctagtttttagacatggagccatgcagaggcttcaaatgctttccttttgttttcaactaaaggagacaaaagtttttcacagtgatttggacatgggcttggagaatctcacctccctcaagactgtacattttcggattgactgtcgttacgctaggctctgggaggtgcaggctgcagaggttgcactaagaagtgcaaccaacttgaatctcaactccccaacccttgacttgagcaaacattttgaaagattgatgtattgggatggaatggaagagatccctgagatgaaaatattcaaagaagaaaatgtattttttttgcagcaatcccttaaatttatttccttctcattttactgtagaattattggtttatcggtttgttgttag
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| Protein seq | MEAAAVSASTGALNTLLPKLADLLLLVAGENHSSRRAVEDGVEHLESELTSMRAALEKVSAAAAPPDQLDGQVRLWARDVRDMSYHIEDAIDTYLLREAAAAGRRPQPPPCCSFVVGLNSSARRRRRAIAAEIERIKKEVAEVSRRRERYRIDDHVVAVVNDAPVDRRLPALYANFASLVGVDASVEEVIKLLSMEGDQGAVMMRRKLKLIAIVGPGGIGKTTLANLVYQKLHGQFECQAFVSVSQKPNVKAVLSSILCQVSQLKYENFSSWGEKEIIDKIRDVLKDIRYFIIIDDIWDKPTWQLLKCVLIDNDHGSKIITTTRNIDVAKLCCYSDDVDGTIQIQQPLSVADSEKLLYHKVFHNERCPPQLKGISQKILKRCGGLPLAIITIASLFANRQTQTEDHWNSDYIIDRDDLIWRWIAEGFIQPKQGTILYEKGERYFDELINRNLIQPICIDVHAEAQACRVHDTILEFIAGLSIEENFVAILNGQCSTSDLPKRIYRLSLQNSKDDITIPDATERFSHVRSLWQGIDLKMPLSGFRVLRALDLGDCSSQNIDNIGNLVHLRYLRLHGTHYNKLPKEIGNLRFLQTLDIKRTRIKELPSTVVHLTQLMRLMVDRWTKLPNGIGNMECLEQLSEIDTSMYPSLMKELSDLPNLRVLEILISTWEQTKEEQFLDCLGSMKKLQIVHIFAPDISLDFMLNKDWTLHELQKLTVGVRRESEDIFKLNPLSGWAEFSPFSILPKWINSSLTNLSYLSIIVKILQQKDLGVLGDLPALCSLYLSVTGALKERLMIIGHSRGNGQAIAFQCLANFNFTSPAMMLVFRHGAMQRLQMLSFCFQLKETKVFHSDLDMGLENLTSLKTVHFRIDCRYARLWEVQAAEVALRSATNLNLNSPTLDLSKHFERLMYWDGMEEIPEMKIFKEENVFFLQQSLKFISFSFYCRIIGLSVCC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0524900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g32210 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0524900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0015600 | RBH | 0.000000 | 0.0 | 2.081914 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0015590 | RBH | 0.079315 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0015520 | SBH | 0.0 | 0.0 | 2.668813 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0015130 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0015660 | RBH | 0.0 | 0.0 | 1.396272 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0298400 | RBH | 0 | 0.820622 | 0.033016 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0015870 | RBH | 0.0 | 0.0 | 0.512517 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0306700 | RBH | 0.011967 | 0.224512 | 0.049339 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0015750 | RBH | 0.0 | 0.037572 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0015790 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0015430 | RBH | 0.0 | 2.196250 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0015220 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0015500 | RBH | 0.0 | 0.368261 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G015350 | RBH | 0.0 | 0.0 | 0.107100 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0015690 | RBH | 0.0 | 0.000000 | 0.605965 |
