Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0010810 | OGI:11030960 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:10935531-10940920 | ||||||||
| Gene Symbol | PLT6, OsPLT6, AP2/EREBP#118, AP2/EREBP118, BBM1, OsBBM1, OsBBML1, BBML1, OsASGR-BBML1, ASGR-BBML1 | ||||||||||
| DNA seq | atggcctccatcaccaactggctcggcttctcctcctcctccttctccggcgccggcgccgaccccgtcctgccccacccgccgctgcaaggcaagaccagccatctcatgcaccgtggctcaaatcttttcccttttcatcatatttttttctctgtattttgattgatgggaaaattgattgtgttgatgtgcagagtgggggagcgcttatgagggcggcggcacggtggcggccgccggcggggaggagacggcggcgccgaagctggaggacttcctcggcatgcaggtgcagcaggagacggccgccgcggctgcggggcacggccgtggaggcagctcgtcggtcgttgggctgtccatgatcaagaactggctacgcagccagccgccgcccgcggtggttgggggagaagacgctatgatggcgctcgcggtgtcgacgtcagcgtcgccgccggtggacgcgacggcgccggcctgcatttcgccggatgggatggggtcgaaggcggccgacggcggcgacgcggccgaggcggcggcggcggcggcggcgcagaggatgaaggcggccatggacacgttcgggcagcggacgtccatctaccggggtgtcaccaagtaggtcgtctctcaccatgcatcttggtcttgctgttttgtgcagaaaattaattgattagattaatcgttttgagctttgtagggattgcattcttgcttgtagtgtttctggtgtgatttcttggattgcatgcactttagttaatttggattgtgatcttgggttgttcctcttgtcgattgattcatcggattgctcattcgattggtttttcgatgcattactgtactattatattttttttcgttgtgttttttgcattgtgatataatagtatttgagttttaatgcacacataaggtgtatattacatgttcttcatttctttctagtacgcatcgatttagccctgacattttatcatgaattttgccgaacgtatgtataggtatatcatataggagtatgatcgtactggggttttttatttgatttgttattagtatttttttgccctattatttcactgttcatcaccaactctatcagtattattggagtgacaactgacaagattttttgtttctccttttttgtcttttgtatctttcccctttgtttacaactggcaagtaattgccgcagatatgctctagctgcttattatatttgaagaatattagaaaatctgagttctatagctctagctttttcttatttctacagtacgtgtatgctagtaattcatatatataagactttcggccttatacaaaagttcagttgcttgcttggatacttatctattctgaattttatctcagtaatatttgccttttcctgaaacagatagtacgaggccttgtttagtttccccaatattcctaactttccatcatattatatcacatcaaaaaattttctacacatataaatttttaactttttttttcaaactttcaactttcttcaaacttttaacttttatcgagaacttctttatgctttcatactctactactactctctccggttctatattaattgatattttgaacaaggttgaagtcaaacttttataactttgaccatcaataactttaaaaatatttatttttagtttaaaggaactagaacaatatatatagatttatcttttaaaatactataataaaaataaacatgtatttatttatttattatatatattataatagaaaaataaaattagagatatatcttgtagaccgtttcattgtccaaaacgtaaaattaaaaagaatcggagggagagcatatacgagttctccagttggtgatattcatttatcgcgatcaacgatttaactaatacacggggcttttttttgtttaattgcgggagttgtgcaccttcatttgatttgactgaaccattaatgtctttcttgtaaattgtgttttagcctcatcattgtatgcatgtcatatttatcggctcaagaagacaagaaccgctgctgttctcgtgtttgactggattaattaactgactagtatacgttacccactccaactagtactgtagtacactacactccctttctctcaaagaaacaaaaaaaacaagtgcacttccataatttaaaatttaagttaaaggagtgcatatattttgagacgaaagaagtattgtttgtagtaatatttgcaaaccactatacttcaatagattaccagtagttgcttgtcagttgctactacttgtggtgctatagctttcatgtttccaattttctggttaatcaatttagttctatgatgaatcaaactggccaggacatcgcattaaatatcacatattactcgttattgctagttgtagttatatacggcccttatgttaaatcaataaaaccttttaaacctaactttgtatcttttcttcctattcattaggcacaggtggacaggaaggtatgaagcccatctttgggataacagctgcagaagagaaggtcagactcgcaaaggcagacaaggtaaacatccccatatatatgcttatttttctacgaacaatttgcttctaatttgctgcttaattaactaattacattgttttctgttgttgcattggttaacttgggactattttgttttggattccacagtatatcttggtaagtatatatttaagtttgtttacgcaaatatattcgtcatgttttcatttgcgcgtagtatgtgtaaattaaatgagtggcatatatgcaatcaatgcaggaggatatgataaggaagaaaaagctgctagggcttatgatttggctgcccttaaatactggggcactacaacgacgacgaattttccggtacaaataattatttctttcttaaaatgcaatgcatgtcaacctttaatcatatatataaatatacatgtttattagtatatgatatattgtcattgctgttaattaggtaagcaactacgaaaaagagttggatgaaatgaagcacatgaataggcaggaatttgttgcatcccttagaaggtacgtgcagttacaaatttatacagagtagcataatggtttctacattggttaagcttcacataagataatttaatgcagaaaaagcagtggattttcacgtggtgcttccatatatcgtggtgttacaaggtacatagttttttattggagtcgttttcttttaccttgtgcgctgtctaatttttcctgttgttatatttgtcttaagaaaaactttagtttaacaatttattaatttaatataatttgtgttgatctgttaattttctaactgtgctcattgaaacttttttaaactgttgcaccaaatcttacatttgcaagtgttgacatcgaacttttaagaatcccgtgtcaatgaacttcaaagccattttctatattatattacatgccgttgctttgctaatagtgaatcaaatatgtgaaacagacaccatcagcatggaaggtggcaagcaaggataggacgggtggcaggaaacaaggatctgtatttgggcacatttggtaagtcacaaacctaatattttaagcatcaaccaaatccatcatctctaatgtcctaaaaaaaggaagcaagaatgaaaagcacaaagcaatctgctggaacatcttttcttttgttttcttcacatactccctccatactcgtaggtcgtttaggacaatgtttaagtcaaaccttgggaatataaattatgaataactcttaagttgttgagtttgaaaatgtaaaaattatatgaatagatttgtcttgaaaaatattttcataaaagtatacatatatcacttttcaataaatatttttatataaacaagaagtcaaagttgtgttttggagaccatgtcgctgttcaaaacgacttcctttacgagtatggatggagtatgtctcacatcactgatcactcagacccttaattatgattaaaaatcatttcaaagctgatactgagattaattaacaaaccttgcaggcacccaagaggaagctgcagaggcatatgatatcgctgcaatcaaattccgtggtctcaatgctgtgacaaactttgacatgagccggtacgatgtcaagagcatcattgaaagcagcaatctcccaattggtactggaaccatccggcgattgaaggactcctctgatcacactgataatgtcatggacatcaatgtcaataccgaacccaataatgtggtatcatcccacttcaccaatggggttggcaactatggttcgcagcattatggttacaatggatggtcgccaattagcatgcagccgatcccctcgcagtacgccaacggccagcccagggcatggttgaaacaagagcaggacagctctgtggttacagcggcgcagaacctgcacaacctacatcattttagttccttgggctacacccacaacttcttccagcaatctgatgttccagacgtcacaggtttcgttgatgcgccttcgaggtccagtgactcatactccttcaggtacaatggaacaaatggctttcatggtctcccgggtggaatcagctatgctatgccggttgcaacagcggtggaccaaggtcagggcatccatggctatggagaagatggtgtggcaggcattgacaccacacatgacctgtatggcagccgtaatgtgtactacctttccgagggttcgcttgttgccgatgtcgaaaaagaaggcgactatggccaatctgtggggggcaacagctgggttttgccgacaccggagtcagagatggtggagaaggctgacaatgtgacggtttgccatgggatgcctctgttctcagtctggaatgatgcttagctgggtggagaattagctatagtagttactgaaaaggtgatattaacagttgttggcagattgattaactgggggatatatagtagtcatacaaagtcttgcatgcttgctgattttgtattgctttcttatcaccaccatgcatgcaatctatagttttgcctttagctagaaatattagctctaaatatctcatggagatatgaattttatgctgatgttacttagggctcttgattatatatatgagctgataattcagccattatcatctcttgctttctgagctaggtgatgtataaattttcgtatggaagaggttaatgttgcagtactgttgataattcagtcagcaggttaaattaaagctaagtgtaactattgtgctggatcgactttgtttctttttcaagattttacaatgttgcacttcgcctgatga
More
|
||||||||||
| CDS seq | atggcctccatcaccaactggctcggcttctcctcctcctccttctccggcgccggcgccgaccccgtcctgccccacccgccgctgcaaggcaagaccagccatctcatgcaccagtgggggagcgcttatgagggcggcggcacggtggcggccgccggcggggaggagacggcggcgccgaagctggaggacttcctcggcatgcaggtgcagcaggagacggccgccgcggctgcggggcacggccgtggaggcagctcgtcggtcgttgggctgtccatgatcaagaactggctacgcagccagccgccgcccgcggtggttgggggagaagacgctatgatggcgctcgcggtgtcgacgtcagcgtcgccgccggtggacgcgacggcgccggcctgcatttcgccggatgggatggggtcgaaggcggccgacggcggcgacgcggccgaggcggcggcggcggcggcggcgcagaggatgaaggcggccatggacacgttcgggcagcggacgtccatctaccggggtgtcaccaagcacaggtggacaggaaggtatgaagcccatctttgggataacagctgcagaagagaaggtcagactcgcaaaggcagacaaggaggatatgataaggaagaaaaagctgctagggcttatgatttggctgcccttaaatactggggcactacaacgacgacgaattttccggtaagcaactacgaaaaagagttggatgaaatgaagcacatgaataggcaggaatttgttgcatcccttagaagaaaaagcagtggattttcacgtggtgcttccatatatcgtggtgttacaagacaccatcagcatggaaggtggcaagcaaggataggacgggtggcaggaaacaaggatctgtatttgggcacatttggcacccaagaggaagctgcagaggcatatgatatcgctgcaatcaaattccgtggtctcaatgctgtgacaaactttgacatgagccggtacgatgtcaagagcatcattgaaagcagcaatctcccaattggtactggaaccatccggcgattgaaggactcctctgatcacactgataatgtcatggacatcaatgtcaataccgaacccaataatgtggtatcatcccacttcaccaatggggttggcaactatggttcgcagcattatggttacaatggatggtcgccaattagcatgcagccgatcccctcgcagtacgccaacggccagcccagggcatggttgaaacaagagcaggacagctctgtggttacagcggcgcagaacctgcacaacctacatcattttagttccttgggctacacccacaacttcttccagcaatctgatgttccagacgtcacaggtttcgttgatgcgccttcgaggtccagtgactcatactccttcaggtacaatggaacaaatggctttcatggtctcccgggtggaatcagctatgctatgccggttgcaacagcggtggaccaaggtcagggcatccatggctatggagaagatggtgtggcaggcattgacaccacacatgacctgtatggcagccgtaatgtgtactacctttccgagggttcgcttgttgccgatgtcgaaaaagaaggcgactatggccaatctgtggggggcaacagctgggttttgccgacaccggagtcagagatggtggagaaggctgacaatgtgacggtttgccatgggatgcctctgttctcagtctggaatgatgcttag
More
|
||||||||||
| Protein seq | MASITNWLGFSSSSFSGAGADPVLPHPPLQGKTSHLMHQWGSAYEGGGTVAAAGGEETAAPKLEDFLGMQVQQETAAAAAGHGRGGSSSVVGLSMIKNWLRSQPPPAVVGGEDAMMALAVSTSASPPVDATAPACISPDGMGSKAADGGDAAEAAAAAAAQRMKAAMDTFGQRTSIYRGVTKHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPVSNYEKELDEMKHMNRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIIESSNLPIGTGTIRRLKDSSDHTDNVMDINVNTEPNNVVSSHFTNGVGNYGSQHYGYNGWSPISMQPIPSQYANGQPRAWLKQEQDSSVVTAAQNLHNLHHFSSLGYTHNFFQQSDVPDVTGFVDAPSRSSDSYSFRYNGTNGFHGLPGGISYAMPVATAVDQGQGIHGYGEDGVAGIDTTHDLYGSRNVYYLSEGSLVADVEKEGDYGQSVGGNSWVLPTPESEMVEKADNVTVCHGMPLFSVWNDA |
||||||||||
| Function | AP2-like ethylene-responsive transcription factor BBM2 [UniProtKB/Swiss-Prot:Q8LSN2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0010810 | OsLaMu_11g0010810.01 | Chr11 | 10935531 | 10940920 | + | NAM | ||
| CDS seq | atggcctccatcaccaactggctcggcttctcctcctcctccttctccggcgccggcgccgaccccgtcctgccccacccgccgctgcaaggcaagaccagccatctcatgcaccagtgggggagcgcttatgagggcggcggcacggtggcggccgccggcggggaggagacggcggcgccgaagctggaggacttcctcggcatgcaggtgcagcaggagacggccgccgcggctgcggggcacggccgtggaggcagctcgtcggtcgttgggctgtccatgatcaagaactggctacgcagccagccgccgcccgcggtggttgggggagaagacgctatgatggcgctcgcggtgtcgacgtcagcgtcgccgccggtggacgcgacggcgccggcctgcatttcgccggatgggatggggtcgaaggcggccgacggcggcgacgcggccgaggcggcggcggcggcggcggcgcagaggatgaaggcggccatggacacgttcgggcagcggacgtccatctaccggggtgtcaccaagcacaggtggacaggaaggtatgaagcccatctttgggataacagctgcagaagagaaggtcagactcgcaaaggcagacaaggaggatatgataaggaagaaaaagctgctagggcttatgatttggctgcccttaaatactggggcactacaacgacgacgaattttccggtaagcaactacgaaaaagagttggatgaaatgaagcacatgaataggcaggaatttgttgcatcccttagaagaaaaagcagtggattttcacgtggtgcttccatatatcgtggtgttacaagacaccatcagcatggaaggtggcaagcaaggataggacgggtggcaggaaacaaggatctgtatttgggcacatttggcacccaagaggaagctgcagaggcatatgatatcgctgcaatcaaattccgtggtctcaatgctgtgacaaactttgacatgagccggtacgatgtcaagagcatcattgaaagcagcaatctcccaattggtactggaaccatccggcgattgaaggactcctctgatcacactgataatgtcatggacatcaatgtcaataccgaacccaataatgtggtatcatcccacttcaccaatggggttggcaactatggttcgcagcattatggttacaatggatggtcgccaattagcatgcagccgatcccctcgcagtacgccaacggccagcccagggcatggttgaaacaagagcaggacagctctgtggttacagcggcgcagaacctgcacaacctacatcattttagttccttgggctacacccacaacttcttccagcaatctgatgttccagacgtcacaggtttcgttgatgcgccttcgaggtccagtgactcatactccttcaggtacaatggaacaaatggctttcatggtctcccgggtggaatcagctatgctatgccggttgcaacagcggtggaccaaggtcagggcatccatggctatggagaagatggtgtggcaggcattgacaccacacatgacctgtatggcagccgtaatgtgtactacctttccgagggttcgcttgttgccgatgtcgaaaaagaaggcgactatggccaatctgtggggggcaacagctgggttttgccgacaccggagtcagagatggtggagaaggctgacaatgtgacggtttgccatgggatgcctctgttctcagtctggaatgatgcttag
More
|
|||||||
| Protein seq | MASITNWLGFSSSSFSGAGADPVLPHPPLQGKTSHLMHQWGSAYEGGGTVAAAGGEETAAPKLEDFLGMQVQQETAAAAAGHGRGGSSSVVGLSMIKNWLRSQPPPAVVGGEDAMMALAVSTSASPPVDATAPACISPDGMGSKAADGGDAAEAAAAAAAQRMKAAMDTFGQRTSIYRGVTKHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPVSNYEKELDEMKHMNRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIIESSNLPIGTGTIRRLKDSSDHTDNVMDINVNTEPNNVVSSHFTNGVGNYGSQHYGYNGWSPISMQPIPSQYANGQPRAWLKQEQDSSVVTAAQNLHNLHHFSSLGYTHNFFQQSDVPDVTGFVDAPSRSSDSYSFRYNGTNGFHGLPGGISYAMPVATAVDQGQGIHGYGEDGVAGIDTTHDLYGSRNVYYLSEGSLVADVEKEGDYGQSVGGNSWVLPTPESEMVEKADNVTVCHGMPLFSVWNDA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0295900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g19060 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0295900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0010910 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0010870 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0010830 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0010580 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0010930 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0164000 | RBH | 0 | 1.592787 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0010820 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0166300 | RBH | 0 | 1.5732615 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0010930 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0011100 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0010750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0010520 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G010880 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0010670 | RBH | 0.0 | 0.0 | 0.0 |
