Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0010050 | OGI:11027430 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:9645652-9646555 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agcccaaatattaatttttttctaggaaaagttccgataatcagattcagagagacagtacagagtattcatacacccatggatatgtccacatttcacgaactcgtacgattgtcgtgcaacgaagaaattattgaaccatttcggaatgccggaaatctgggcacatctaggcgaggaattcacagacggccttccacgactccgggaagaagctcttacgggtggcgacgtaggcctcgccgtcgcggaccttgccgatggaggtggtcacgatgcccgcggcctcgccggtcacctcctccctgccgtcgcacctggaatcggtcatgtaccagtagccgccgaacgtggacccgtccatggcctccgaccggagcaccagcttcgacctcatcatcgggtacggcgccttgtcccgcagcagcgccgcgacgtacggcggcggcgccggcgggaggtcgccgccgccgccgtcgtcccgcctcagtctcacctccggtgcctcgaaggtggcctccttccagacggccatgtcgtcgtgcgccagcaccagcgccagcgccagggacgacctgacgtcgccggcgaccgcggcggcggtcgggaacggcatgtcgaacagcgcgcggaccgcctcggccgtgcggtacgcagccagctcggctgtcgccgccgcagacgtgccgccgttgtcgacgtcgtcgcagaacgagctgccctcgccggccgcgaaggtggtgacgaggcctttgctcgacggcctggcatggccgcggacctccttgagcttctgctccagctctgctataaactgctcggtgcggtagttctcgccgccgccatggccgccaagagtcaggaagaagacgccgttcttggttgataactggcaaaaacccat
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| CDS seq | atgggtttttgccagttatcaaccaagaacggcgtcttcttcctgactcttggcggccatggcggcggcgagaactaccgcaccgagcagtttatagcagagctggagcagaagctcaaggaggtccgcggccatgccaggccgtcgagcaaaggcctcgtcaccaccttcgcggccggcgagggcagctcgttctgcgacgacgtcgacaacggcggcacgtctgcggcggcgacagccgagctggctgcgtaccgcacggccgaggcggtccgcgcgctgttcgacatgccgttcccgaccgccgccgcggtcgccggcgacgtcaggtcgtccctggcgctggcgctggtgctggcgcacgacgacatggccgtctggaaggaggccaccttcgaggcaccggaggtgagactgaggcgggacgacggcggcggcggcgacctcccgccggcgccgccgccgtacgtcgcggcgctgctgcgggacaaggcgccgtacccgatgatgaggtcgaagctggtgctccggtcggaggccatggacgggtccacgttcggcggctactggtacatgaccgattccaggtgcgacggcagggaggaggtgaccggcgaggccgcgggcatcgtgaccacctccatcggcaaggtccgcgacggcgaggcctacgtcgccacccgtaagagcttcttcccggagtcgtggaaggccgtctgtgaattcctcgcctag
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| Protein seq | MGFCQLSTKNGVFFLTLGGHGGGENYRTEQFIAELEQKLKEVRGHARPSSKGLVTTFAAGEGSSFCDDVDNGGTSAAATAELAAYRTAEAVRALFDMPFPTAAAVAGDVRSSLALALVLAHDDMAVWKEATFEAPEVRLRRDDGGGGDLPPAPPPYVAALLRDKAPYPMMRSKLVLRSEAMDGSTFGGYWYMTDSRCDGREEVTGEAAGIVTTSIGKVRDGEAYVATRKSFFPESWKAVCEFLA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0010050 | OsLaMu_11g0010050.01 | Chr11 | 9645652 | 9646555 | - | NAM | ||
| CDS seq | atgggtttttgccagttatcaaccaagaacggcgtcttcttcctgactcttggcggccatggcggcggcgagaactaccgcaccgagcagtttatagcagagctggagcagaagctcaaggaggtccgcggccatgccaggccgtcgagcaaaggcctcgtcaccaccttcgcggccggcgagggcagctcgttctgcgacgacgtcgacaacggcggcacgtctgcggcggcgacagccgagctggctgcgtaccgcacggccgaggcggtccgcgcgctgttcgacatgccgttcccgaccgccgccgcggtcgccggcgacgtcaggtcgtccctggcgctggcgctggtgctggcgcacgacgacatggccgtctggaaggaggccaccttcgaggcaccggaggtgagactgaggcgggacgacggcggcggcggcgacctcccgccggcgccgccgccgtacgtcgcggcgctgctgcgggacaaggcgccgtacccgatgatgaggtcgaagctggtgctccggtcggaggccatggacgggtccacgttcggcggctactggtacatgaccgattccaggtgcgacggcagggaggaggtgaccggcgaggccgcgggcatcgtgaccacctccatcggcaaggtccgcgacggcgaggcctacgtcgccacccgtaagagcttcttcccggagtcgtggaaggccgtctgtgaattcctcgcctag
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| Protein seq | MGFCQLSTKNGVFFLTLGGHGGGENYRTEQFIAELEQKLKEVRGHARPSSKGLVTTFAAGEGSSFCDDVDNGGTSAAATAELAAYRTAEAVRALFDMPFPTAAAVAGDVRSSLALALVLAHDDMAVWKEATFEAPEVRLRRDDGGGGDLPPAPPPYVAALLRDKAPYPMMRSKLVLRSEAMDGSTFGGYWYMTDSRCDGREEVTGEAAGIVTTSIGKVRDGEAYVATRKSFFPESWKAVCEFLA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 3.032295 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0275800 | SBH | 0.0 | 0.536672 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g16990 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0275800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0010170 | RBH | 0.0 | 5.615464 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0010060 | RBH | 0.0 | 1.216053 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0010060 | RBH | 0.0 | 10.966265 | 0.314569 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0010040 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0010040 | RBH | 0.0 | 3.624688 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0146200 | RBH | 0.413684 | 2.890963 | 0.018074 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0010050 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0147700 | RBH | 0.1858935 | 1.802346 | 0.117948 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0010160 | RBH | 0.000000 | 0.147801 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0010350 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0010020 | RBH | 0.0 | 2.332613 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0009900 | RBH | 0.000000 | 0.0 | 0.078302 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G010160 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0009930 | RBH | 0.0 | 0.0 | 0.678936 |
