Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0008990 | OGI:11023020 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:7997260-7998267 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggacggacggctctttgaagccgcaaagtcaggcgattgcaggttgatgaaggagctggtggctgccatggatccaagcatattgctccgcacaactcctcaggggaacacctgcctccacatatccactatcaatggtcatgaggaattctgccaggaggtgttgatgttagacaattctcttctcaccgttgcaaactcacacggcgagacgccgctgctcaccgcggtaaccaacggccgcaccgccttggcctccgttttgctcagacggtgctgcgaagcggggctcagagaagctatcttgaaacaagatgagaatggatgtaatgccctgcaccatgccattcgcaacggccacagggaccttgcgttggaactgatagcagcagaagcaggcctgtcacaagttgtaaacaagtacagggaatcacccatgtacatagctgtgatgagagatttcactgatatcttccggaaactgttggggattcctggttctgctcacgtgggttgtcatggccgcaatgctctccatgccgccgtgagaaacgggaatccaggtaagaattgcatactaggctgtctgacgagtcattaataattactccattattcgttaaaatgaccacaggcaggtgattcttgcatatatcattaaatttgttttcagttattgctaaagagttagtggagaagcgtccagggctggctagagaattcgacgatgaaatggatactccaatgcatcatgccgcaatgtggggtaaaacccatgttctcggagcattgctgcagtatgattggtccttggggtatgtcctaagtaataataaggacagtgtcccgctccttaattccgccgcataccgtggctatgttagtgttgctagagagcttgtgcatcattgtccagatgctccgtattacgacgctaatggttgcacatgtctccatcaagccgcattcaaacactggtggagaaaccctttatagtcccggttcg
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| CDS seq | atggacggacggctctttgaagccgcaaagtcaggcgattgcaggttgatgaaggagctggtggctgccatggatccaagcatattgctccgcacaactcctcaggggaacacctgcctccacatatccactatcaatggtcatgaggaattctgccaggaggtgttgatgttagacaattctcttctcaccgttgcaaactcacacggcgagacgccgctgctcaccgcggtaaccaacggccgcaccgccttggcctccgttttgctcagacggtgctgcgaagcggggctcagagaagctatcttgaaacaagatgagaatggatgtaatgccctgcaccatgccattcgcaacggccacagggaccttgcgttggaactgatagcagcagaagcaggcctgtcacaagttgtaaacaagtacagggaatcacccatgtacatagctgtgatgagagatttcactgatatcttccggaaactgttggggattcctggttctgctcacgtgggttgtcatggccgcaatgctctccatgccgccgtgagaaacgggaatccagttattgctaaagagttagtggagaagcgtccagggctggctagagaattcgacgatgaaatggatactccaatgcatcatgccgcaatgtggggtaaaacccatgttctcggagcattgctgcagtatgattggtccttggggtatgtcctaagtaataataaggacagtgtcccgctccttaattccgccgcataccgtggctatgttagtgttgctagagagcttgtgcatcattgtccagatgctccgtattacgacgctaatggttgcacatgtctccatcaagccgcattcaaacactggtggagaaaccctttatag
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| Protein seq | MDGRLFEAAKSGDCRLMKELVAAMDPSILLRTTPQGNTCLHISTINGHEEFCQEVLMLDNSLLTVANSHGETPLLTAVTNGRTALASVLLRRCCEAGLREAILKQDENGCNALHHAIRNGHRDLALELIAAEAGLSQVVNKYRESPMYIAVMRDFTDIFRKLLGIPGSAHVGCHGRNALHAAVRNGNPVIAKELVEKRPGLAREFDDEMDTPMHHAAMWGKTHVLGALLQYDWSLGYVLSNNKDSVPLLNSAAYRGYVSVARELVHHCPDAPYYDANGCTCLHQAAFKHWWRNPL |
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| Function | Ankyrin repeat-containing protein ITN1 [UniProtKB/Swiss-Prot:Q9C7A2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0008990 | OsLaMu_11g0008990.01 | Chr11 | 7997260 | 7998267 | + | NAM | ||
| CDS seq | atggacggacggctctttgaagccgcaaagtcaggcgattgcaggttgatgaaggagctggtggctgccatggatccaagcatattgctccgcacaactcctcaggggaacacctgcctccacatatccactatcaatggtcatgaggaattctgccaggaggtgttgatgttagacaattctcttctcaccgttgcaaactcacacggcgagacgccgctgctcaccgcggtaaccaacggccgcaccgccttggcctccgttttgctcagacggtgctgcgaagcggggctcagagaagctatcttgaaacaagatgagaatggatgtaatgccctgcaccatgccattcgcaacggccacagggaccttgcgttggaactgatagcagcagaagcaggcctgtcacaagttgtaaacaagtacagggaatcacccatgtacatagctgtgatgagagatttcactgatatcttccggaaactgttggggattcctggttctgctcacgtgggttgtcatggccgcaatgctctccatgccgccgtgagaaacgggaatccagttattgctaaagagttagtggagaagcgtccagggctggctagagaattcgacgatgaaatggatactccaatgcatcatgccgcaatgtggggtaaaacccatgttctcggagcattgctgcagtatgattggtccttggggtatgtcctaagtaataataaggacagtgtcccgctccttaattccgccgcataccgtggctatgttagtgttgctagagagcttgtgcatcattgtccagatgctccgtattacgacgctaatggttgcacatgtctccatcaagccgcattcaaacactggtggagaaaccctttatag
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| Protein seq | MDGRLFEAAKSGDCRLMKELVAAMDPSILLRTTPQGNTCLHISTINGHEEFCQEVLMLDNSLLTVANSHGETPLLTAVTNGRTALASVLLRRCCEAGLREAILKQDENGCNALHHAIRNGHRDLALELIAAEAGLSQVVNKYRESPMYIAVMRDFTDIFRKLLGIPGSAHVGCHGRNALHAAVRNGNPVIAKELVEKRPGLAREFDDEMDTPMHHAAMWGKTHVLGALLQYDWSLGYVLSNNKDSVPLLNSAAYRGYVSVARELVHHCPDAPYYDANGCTCLHQAAFKHWWRNPL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0252400 | SBH | 0.307645 | 0.404049 | 30.317059 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g14260 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0252400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0009070 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008960 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008990 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008810 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008900 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0120500 | RBH | 0.113739 | 0.0047725 | 0.0054895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008920 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0124600 | RBH | 0.095319 | 0.017053 | 0.0103735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0009000 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0009080 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008970 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008860 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G009050 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008900 | RBH | 0.0 | 0.0 | 0.0 |
