Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0005200 | OGI:11012770 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:4137007-4140263 | ||||||||
| Gene Symbol | DUF668-11, OsDUF668-11 | ||||||||||
| DNA seq | tcaggcgatgaaatcttcatcAatatctgaccaagtggtgctaatgttaccgaagctggtcgatccactgatgcctgtgctagccgagctggttgatgatccactggtactcactggttgatcaagaggaccgctatggtgcggtgcatcagccctcagtctcgcggcttttatgagaagatgaaggtccatcaccatgtcaatgatgcagccatcagtcttcatcttatcagcatggtacagtgtctgaaCcttgagcatcttacgttgatcacggtcactgaggctcctacaagaatttcatgaggaattattagtgaaatcagcaattgtgcttttgcatattgttcatgacaaaatagacacgacagtcatagttatataccctgataccaggcattctctgatcattccagtgtgctgagacagcctgatgttcagatatgtacaaggtgagcatcaggttattattcattgaatgaacctggtgtatatggcaagagattacagtaccttattgtaaattctgccattgggtagagccattcaagtctcctggtcatctcatcggcgatctgcgtttctgtcctctgcaataagaagatgcaaagttcagaaagaaatgaagatgaacagtatatacaggatacacatttttgtcaggtaatcggaattgacagaaaagagtggtcacctggtcgtcaaaatcgccgtgtctcatcctaggtagcaaaactgatctgattctataaggcagtgcatggaacaatgaatctacagcacattgcggaaccgatgatgcgacggatacctgcgattgaaactttatgagcaaataaaatcagtttcgacatttcagttagtgtgccaaatcaactgaaaaccggaaatatgtttatatcatgcacgactacacttgatcaatgaccaagatcctagaacaatggcctaatgactgtcaaAGaatcttaccaaaacttgtatggcgataacgatccttgcgtaattcagatggagatcagcagaccctaaagtttgctgagggctcccattagccttcacagatctatcctcttcatgttccttgtagaagacacaattgatctcagaaggcaagtaatgcacaatgtacacaagttcctccacaatctgcaacagaaacagcatttgtgtatttaacataaattcgttattgaaaaatgtgataaacattaatcatcatatcacacagtttttacgtactttttcaatcttcttgacccaaagtgctttcttctttgcgctttgcacgatttctttttcaatgttcaccgcattttggaaagtctcaagtggcatacctgcacatataaaaaaatgttaagaactgatgtgaagaacataaatagacatatttctgattagttgtgctgatcacaCaaatggttttgggaagcacctgtctgcttggcttccctgtacatcttctcggagactcccaatcggcgcaatgcttcaaacagtatctgcacagaagaaaatagaacagcaacatcatttcagtggttcctaaaaagaaaatgtgttgaaccaacagtggtaatgacattagaaaatatgtgactaacacacctttgtcttagtcacaagttccatcagatcctccatcttggatgctgctttttcatgggaatactcctgagttatgggaccatactccaatctgcgcagtgacaagaggcacacaaatgaacactcagatagaataaaatatgattgagccatgaattatacaagaacagtaatgtggtggcagctaaaattttacccagagaaatgctcatcaagattgtgccatttgggatccctgcacatgttcccaagcctagcaacagatgccgcaaaaTCtttgaactgttgtctgcataaaccaagcccaatgaatgtaagaaatcttgaaaaacacatataagtaataaTttatataaatagtaaaagcattgaaatttatagaaaaagtcattaattacctaatttcatccccaacaagagcaagcaactggctctgatcatctgagatcagactttggacgccttggttctgaagcacaacacgtttcaggtaccttatgttttcctcggagaggaagttcatcaggttggaacccatggcaattgtgttggctacctcaaaggccaggatctttatttttctaccctttttggtagcaatatagttccttatgctgccgatcacggtcttcagtgtcggagatttagccactggtttgttggaatcctctgatggattgcctgatattcctttgctggttctcctgacagaagtgtccatttctgatacctaaatgatcaaagaaagatttagtctaattgatgcacgatgtattgttcttgattagccacatCAcaaatattgaaatagataggttccttttaaaaggaaatggtgcattttcatgaatgatccgcaaaaacataaccaaactgtgaatatgtcttccccacaaataaaaaaaaaatctattaatatgtcttcCAcacacacacacacacacaaagctgaatatgtcttccccacaaattaaaaaactgtgaatgtgtcttccccgcaaaaaaaaaaatgtgaatatgtttaaaacgtagatcctaaatcccacatttatgatgtttctttttatctcaacccagcatatgcatgatgatgccctagcatattcttctccctggaacaccaccatttctgaaactttcatcccaaagaaatcaaatcaatgcatcaaaccactgcatcaaatccagtttttaaccacaaaattagcaagcatcaagaaagagtagcatctGCtcttcaaataagaagatgaagacgaacatgagtagtaacctaTaGaTatcataccttctctttgcccttgtcgagcaatgctgtcttcttggatgccggtggcggcgcttcaccgcccgccttgtgctcgccggaggcctccggcgccgtcttcctcctcgagctcgagctcttcccagaagactgcgcCGTcgtcgtcgtcgtcgcctgctgctgctcgccatgggaagcaaaagcttcatcgcctgaagacgacggggagccgcaaacgatgccaaccacagagcagaaacgactcatcttcatgatctgatcacaaagaactcaaaaactataccgtgtgatgatgcggacgagatcctatctgaccatggacgaacacgagaggttggccatggagagcatgcaaaat
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| CDS seq | atggacacttctgtcaggagaaccagcaaaggaatatcaggcaatccatcagaggattccaacaaaccagtggctaaatctccgacactgaagaccgtgatcggcagcataaggaactatattgctaccaaaaagggtagaaaaataaagatcctggcctttgaggtagccaacacaattgccatgggttccaacctgatgaacttcctctccgaggaaaacataaggtacctgaaacgtgttgtgcttcagaaccaaggcgtccaaagtctgatctcagatgatcagagccagttgcttgctcttgttggggatgaaattagacaacagttcaaaGAttttgcggcatctgttgctaggcttgggaacatgtgcagggatcccaaatggcacaatcttgatgagcatttctctggattggagtatggtcccataactcaggagtattcccatgaaaaagcagcatccaagatggaggatctgatggaacttgtgactaagacaaagatactgtttgaagcattgcgccgattgggagtctccgagaagatgtacagggaagccaagcagacaggtatgccacttgagactttccaaaatgcggtgaacattgaaaaagaaatcgtgcaaagcgcaaagaagaaagcactttgggtcaagaagattgaaaaaattgtggaggaacttgtgtacattgtgcattacttgccttctgagatcaattgtgtcttctacaaggaacatgaagaggatagatctgtgaaggctaatgggagccctcagcaaactttagggtctgctgatctccatctgaattacgcaaggatcgttatcgccatacaagttttggtatccgtcgcatcatcggttccgcaatgtgctgtagattcattgttccatgcactgccttatagaatcagatcagttttgctacctaggatgagacacggcgattttgacgaccagaggacagaaacgcagatcgccgatgagatgaccaggagacttgaatggctctacccaatggcagaatttacaataaggctgtctcagcacactggaatgatcagagaatgcctggtatcagggagcctcagtgaccgtgatcaacgtaagatgctcaagGttcagacactgtaccatgctgataagatgaagactgatggctgcatcattgacatggtgatggaccttcatcttctcataaaagccgcgagactgagggctgatgcaccgcaccatagcggtcctcttgatcaaccagtgagtaccagtggatcatcaaccagctcggctagcacaggcatcagtggatcgaccagcttcggtaacattagcaccacttggtcagatatTgatgaagatttcatcgcctga
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| Protein seq | MDTSVRRTSKGISGNPSEDSNKPVAKSPTLKTVIGSIRNYIATKKGRKIKILAFEVANTIAMGSNLMNFLSEENIRYLKRVVLQNQGVQSLISDDQSQLLALVGDEIRQQFKDFAASVARLGNMCRDPKWHNLDEHFSGLEYGPITQEYSHEKAASKMEDLMELVTKTKILFEALRRLGVSEKMYREAKQTGMPLETFQNAVNIEKEIVQSAKKKALWVKKIEKIVEELVYIVHYLPSEINCVFYKEHEEDRSVKANGSPQQTLGSADLHLNYARIVIAIQVLVSVASSVPQCAVDSLFHALPYRIRSVLLPRMRHGDFDDQRTETQIADEMTRRLEWLYPMAEFTIRLSQHTGMIRECLVSGSLSDRDQRKMLKVQTLYHADKMKTDGCIIDMVMDLHLLIKAARLRADAPHHSGPLDQPVSTSGSSTSSASTGISGSTSFGNISTTWSDIDEDFIA |
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| Function | Protein PSK SIMULATOR 1 [UniProtKB/Swiss-Prot:Q9XID5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0005200 | OsLaMu_11g0005200.01 | Chr11 | 4137007 | 4140263 | - | NAM | ||
| CDS seq | atggacacttctgtcaggagaaccagcaaaggaatatcaggcaatccatcagaggattccaacaaaccagtggctaaatctccgacactgaagaccgtgatcggcagcataaggaactatattgctaccaaaaagggtagaaaaataaagatcctggcctttgaggtagccaacacaattgccatgggttccaacctgatgaacttcctctccgaggaaaacataaggtacctgaaacgtgttgtgcttcagaaccaaggcgtccaaagtctgatctcagatgatcagagccagttgcttgctcttgttggggatgaaattagacaacagttcaaaGAttttgcggcatctgttgctaggcttgggaacatgtgcagggatcccaaatggcacaatcttgatgagcatttctctggattggagtatggtcccataactcaggagtattcccatgaaaaagcagcatccaagatggaggatctgatggaacttgtgactaagacaaagatactgtttgaagcattgcgccgattgggagtctccgagaagatgtacagggaagccaagcagacaggtatgccacttgagactttccaaaatgcggtgaacattgaaaaagaaatcgtgcaaagcgcaaagaagaaagcactttgggtcaagaagattgaaaaaattgtggaggaacttgtgtacattgtgcattacttgccttctgagatcaattgtgtcttctacaaggaacatgaagaggatagatctgtgaaggctaatgggagccctcagcaaactttagggtctgctgatctccatctgaattacgcaaggatcgttatcgccatacaagttttggtatccgtcgcatcatcggttccgcaatgtgctgtagattcattgttccatgcactgccttatagaatcagatcagttttgctacctaggatgagacacggcgattttgacgaccagaggacagaaacgcagatcgccgatgagatgaccaggagacttgaatggctctacccaatggcagaatttacaataaggctgtctcagcacactggaatgatcagagaatgcctggtatcagggagcctcagtgaccgtgatcaacgtaagatgctcaagGttcagacactgtaccatgctgataagatgaagactgatggctgcatcattgacatggtgatggaccttcatcttctcataaaagccgcgagactgagggctgatgcaccgcaccatagcggtcctcttgatcaaccagtgagtaccagtggatcatcaaccagctcggctagcacaggcatcagtggatcgaccagcttcggtaacattagcaccacttggtcagatatTgatgaagatttcatcgcctga
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| Protein seq | MDTSVRRTSKGISGNPSEDSNKPVAKSPTLKTVIGSIRNYIATKKGRKIKILAFEVANTIAMGSNLMNFLSEENIRYLKRVVLQNQGVQSLISDDQSQLLALVGDEIRQQFKDFAASVARLGNMCRDPKWHNLDEHFSGLEYGPITQEYSHEKAASKMEDLMELVTKTKILFEALRRLGVSEKMYREAKQTGMPLETFQNAVNIEKEIVQSAKKKALWVKKIEKIVEELVYIVHYLPSEINCVFYKEHEEDRSVKANGSPQQTLGSADLHLNYARIVIAIQVLVSVASSVPQCAVDSLFHALPYRIRSVLLPRMRHGDFDDQRTETQIADEMTRRLEWLYPMAEFTIRLSQHTGMIRECLVSGSLSDRDQRKMLKVQTLYHADKMKTDGCIIDMVMDLHLLIKAARLRADAPHHSGPLDQPVSTSGSSTSSASTGISGSTSFGNISTTWSDIDEDFIA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g07840 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0005320 | RBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0005290 | RBH | 0.0 | 0.807342 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0005320 | RBH | 0.0 | 1.109497 | 0.957426 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0005180 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0005100 | RBH | 0.0 | 0.000000 | 0.860978 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0067600 | RBH | 0 | 4.502972 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0005180 | RBH | 0.0 | 0.0 | 0.028340 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0067600 | RBH | 0.0349485 | 0.3035405 | 0.014178 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0005140 | RBH | 0.0 | 0.043771 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0005200 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0005230 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0005210 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G005260 | RBH | 0.0 | 0.0 | 0.153208 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0005150 | RBH | 0.0 | 0.0 | 0.738165 |
