Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0003860 | OGI:11008440 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:2738382-2740239 | ||||||||
| Gene Symbol | RAP2.8, OsRAP2.8 | ||||||||||
| DNA seq | gcaacgtaatttctttactgcttgtcgtttgcgggagttttctttagtcatactattaacatcatagtgatttattcagacaaattaccatgtaagtcatttctaaaaagttggaataaattgcacatgcactccttaatttcttacacagtgtaatcggtgaacctattggattgcaacaaatggaagcattgcataattgcatctggtccatcaacaattgattgcatcaggtcaagcacagtagaagaggtgaaatggggataaagttatgtttcctgaggaggcaggagtggatacatcagcttcagggtttgttcttggacccactatacagacagatgacacatactgacatacatacagctctctgcctgtctcttcaattcccctctccttttcaacttgatgtttcctgaaacctccccatccatgtctgctgccaggggcccatacagtaagtagggtttctggaagccaagatgaagaagaaaataacctagaaaaaaggcactatggggatggaaggaatatgcatttgcccgggaaacaagggagttcccccccCActtccttccttgtccttccacaagtcacaatttaaacctgtcactgaatgcagagcagtagcaactagttcttccactgttgcttgctaggacttatgaattatgatcatgcaggcatggcctcagatcagatctcatagtcaatcttcttatgaattgcccctgtcatgttaagttgtagttcatggattagagaaatgttcttgatgcttatagctaagtaatcacCTcaatttagtggtgtttgaagttaacactaaccagtaactgggtactgcagacatggcagcataggagctctgctggtgcatgtagccgtacattgttgccgctgccgtggtgtctgcctccggctctggcccgcagtcgaggttgacgccgaacagcctgagccgcctcgatggcgccgagcctgcactgaagcttgggctgtccgtgtcgcgcggagactcgtctacagtttggtcatcagaaatggtatgagcaagcaaagctcgaggtatgaaatgttatgctgttcatgttaattttgtttatgatcatcagttgcttcgtcttcgtttctttacctgcatggtgcatgtccccgtgatcatgatctgctgcgcGGCGGTAggcgtaggagttggctgggctggtagggtatgagccgccgcccgacgtgctgtaacacattgggctccacggctgctgctcgccggcgttctgtgcagccggggcgacgcgcacggcgggcggcggtgcgggtgtttgcgcggcggcggcgtcgccgcggcgcctgcagccgatgaagagacggtcgccgacgccgaaggagccgcgcaccctctcgaagtgcacgacgtcgccggcgtcgaggcgcttctccttgacgtagcggctccagcccttggtgagcacgtagctctggctgctcgtccagtaggagtacctgaaccgccacggcgcgccggcctcgtcctcgaacgacaggatcaggcccttgtcggcggcgtcgccggcaccgagggggaagtacctctcggcgtgctgcttggggatcaccagccggttcagcttccccacgtcactgggcgtcaggggcttctcaaacatgtgctccttctcgtagtggtggtggtagtggaagttggcgtacatggccacaccccatggccaggactggggttgctcctgggagaagagaGggtggttcattgccatttctgctagcttacttctcttttgtggcaaaagcttttgctgctagtgctggagagggatagcagggatggtgtgcggtgtagaga
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| CDS seq | atggcaatgaaccaccCtctcttctcccaggagcaaccccagtcctggccatggggtgtggccatgtacgccaacttccactaccaccaccactacgagaaggagcacatgtttgagaagcccctgacgcccagtgacgtggggaagctgaaccggctggtgatccccaagcagcacgccgagaggtacttccccctcggtgccggcgacgccgccgacaagggcctgatcctgtcgttcgaggacgaggccggcgcgccgtggcggttcaggtactcctactggacgagcagccagagctacgtgctcaccaagggctggagccgctacgtcaaggagaagcgcctcgacgccggcgacgtcgtgcacttcgagagggtgcgcggctccttcggcgtcggcgaccgtctcttcatcggctgcaggcgccgcggcgacgccgccgccgcgcaaacacccgcaccgccgcccgccgtgcgcgtcgccccggctgcacagaacgccggcgagcagcagccgtggagcccaatgtgttacagcacgtcgggcggcggctcataccctaccagcccagccaactcctacgccTACCGCCgcgcagcagatcatgatcacggggacatgcaccatgcagacgagtctccgcgcgacacggacagcccaagcttcagtgcaggctcggcgccatcgaggcggctcaggctgttcggcgtcaacctcgactgcgggccagagccggaggcagacaccacggcagcggcaacaatgtacggctacatgcaccagcagagctcctatgctgccatgtctgcagtacccagggcaattcataagaagattgactatgagatctga
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| Protein seq | MAMNHPLFSQEQPQSWPWGVAMYANFHYHHHYEKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFIGCRRRGDAAAAQTPAPPPAVRVAPAAQNAGEQQPWSPMCYSTSGGGSYPTSPANSYAYRRAADHDHGDMHHADESPRDTDSPSFSAGSAPSRRLRLFGVNLDCGPEPEADTTAAATMYGYMHQQSSYAAMSAVPRAIHKKIDYEI |
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| Function | B3 domain-containing protein Os11g0156000 [UniProtKB/Swiss-Prot:Q53QI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0003860 | OsLaMu_11g0003860.01 | Chr11 | 2738382 | 2740239 | - | NAM | ||
| CDS seq | atggcaatgaaccaccCtctcttctcccaggagcaaccccagtcctggccatggggtgtggccatgtacgccaacttccactaccaccaccactacgagaaggagcacatgtttgagaagcccctgacgcccagtgacgtggggaagctgaaccggctggtgatccccaagcagcacgccgagaggtacttccccctcggtgccggcgacgccgccgacaagggcctgatcctgtcgttcgaggacgaggccggcgcgccgtggcggttcaggtactcctactggacgagcagccagagctacgtgctcaccaagggctggagccgctacgtcaaggagaagcgcctcgacgccggcgacgtcgtgcacttcgagagggtgcgcggctccttcggcgtcggcgaccgtctcttcatcggctgcaggcgccgcggcgacgccgccgccgcgcaaacacccgcaccgccgcccgccgtgcgcgtcgccccggctgcacagaacgccggcgagcagcagccgtggagcccaatgtgttacagcacgtcgggcggcggctcataccctaccagcccagccaactcctacgccTACCGCCgcgcagcagatcatgatcacggggacatgcaccatgcagacgagtctccgcgcgacacggacagcccaagcttcagtgcaggctcggcgccatcgaggcggctcaggctgttcggcgtcaacctcgactgcgggccagagccggaggcagacaccacggcagcggcaacaatgtacggctacatgcaccagcagagctcctatgctgccatgtctgcagtacccagggcaattcataagaagattgactatgagatctga
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| Protein seq | MAMNHPLFSQEQPQSWPWGVAMYANFHYHHHYEKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFIGCRRRGDAAAAQTPAPPPAVRVAPAAQNAGEQQPWSPMCYSTSGGGSYPTSPANSYAYRRAADHDHGDMHHADESPRDTDSPSFSAGSAPSRRLRLFGVNLDCGPEPEADTTAAATMYGYMHQQSSYAAMSAVPRAIHKKIDYEI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.838663 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0156000 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g05740 | RBH | 0.0 | 0.0 | 0.294456 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0156000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0003840 | RBH | 0.0 | 0.0 | 0.963737 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0003920 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0003820 | RBH | 0.0 | 0.0 | 1.207609 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0003770 | RBH | 0.0 | 0.132670 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0003740 | RBH | 0.0 | 16.191761 | 0.690750 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0047700 | RBH | 0.4119515 | 0.4915425 | 0.2542965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0003830 | RBH | 0.0 | 0.433311 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0003750 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0003830 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0003830 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0003760 | RBH | 0.0 | 0.0 | 0.882349 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004000 | RBH | 0.0 | 19.820532 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G003840 | RBH | 0.054915 | 8.494149 | 1.082498 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0003820 | RBH | 0.0 | 4.382546 | 0.0 |
