Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0003500 | OGI:11007760 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:2431782-2436104 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttagatactcatagccggttctaacttagttggggcagccatctgggttgttgtaaactcaggagatgttggtaagttgggtgagagtgataggcttgcctgtagcctccttgaggttgaaggagctgaagcccttggtgagaggttcaccatctccagtgcctgcatcctgagctgcattggatagtccttcacacatccaatccttggaccagccccagtgctccatttcagggacaacttgtggccaagctgataggatcttgattccctcttggatttcaccctctcaagaattgctttccgcgggacgtcgatggtggctctagggctttgtagcccacctgataaggttctttggtaggttggctttgcttgctctgtggcagcattgtcgccttcggcaccttcaacttgtgaagatgacccagatgccttgttttctagtaccatgttttgtgggagaatcaattgtggaggattggattcaatgatggcagtgatagggctctgaactttattaggaactggttcttcataccaagcatcatcgtcggatgggcgcacctgaATatatacacaaataagaactcattgattgaaaccatgcatttgatatatttcataaatacttagcctgaaatatggtgtaccacgttgttgagatcaactccattctcctctaggaagttcatgaagttgctgaggttctctgcacttggtttgtagtgaccactataggcccagacggactgaaatcagaatagatcatcagagatagaaaaaagtgctgattaatgcacccaaggaacagaatcatgaacaagtcatatgaaaattatcaaaatgttctcttataatgtgcttgcgaccagaagattagataatccattctgatgtccttgtaagtcgtaactaagtaaattgatcaaagAaaaaaaaatctgaagaatcttgtgggagttatAttgggaaaatgtgataatgtaagtagatattttgatttagcaacgataaaagataggtaaatttaaatgaccagtttgatccactatacaaatttcaaccacttacgcgaaaatatttataaaatccatccaggcattgtctaatatttgtcacaaaagaatatgcatgctaaactgtcatatcaggaaagtaaaatgcagtgcacaaacaataatgaaccttgataactccattttctgctgtaaacctcccagcagctatggtagcacctcctgctaaaaagctcgagtgctggaacacacctttctctttctgcatgaataaatcagcttatatatatgagtaaatatttatagagatgctaattaagctaccagcttatatgagtaaatcagcactaacgaacacaaaatccttatggcacggagaaaattaaaccaccttgccagcataaagtctcttcgttgtgctcataacaaaaatccattttgacccttggcttgtatcaaggggttcttcagagtacttatggataatctttccttctgtaatgatgtattcatattgctcacgctcttgctgcaaaacatgcatcagatatatataattgttagaaccatctgtaggtaggaagcaaaaATatagatctcactaacaatattttcatgttacaattttgtaggttgctgaatttaatggtttgtttcagttgtcaaggattatatatgcagcaactatagaaatgatcttaccggaccaagatattttatgcattgcttcttcagctgagctcttggacactcaggaaggtcaacatcttttccctccccaatatcaagcctacatttgcaaaaagaacattactgaaatcactgcacaatcaaaccactcactgaaatttatgtgattcagtgcaacactgaacttaatgcattctatttgcaaattaatctctttttgtcagacacatccaaccagtttaattattccaatgacatggagtagtttgcaaatgcaagcacacaaatcacagtcaacttctcaccagtagaaaaaaggctggccggcctggctttggcaccagacatcatagtagcactgcagattgtgaccatatctatgccgtgggtcaatctatacaacgaatgataattgctgtcataattgcatatgtgcatcaaaagtttcacataatgaacgaaaaaaagcagaagcagaagcttccatcacgccatcatgataagctgtgaagctttctcatgagcgatgatgtattcatgctcacacctgacgaactacaagtccaatcaagtcaactgatagcagcctcttttcacgtgTAtatatatataataaaacaataaaacaaataccattaatttctgaaccataaaagtattagtaatacactaatacctgatcaagtaaagaacactggtAaaaaaaaaacactagtagatttgtactgttgtacttacagcctcgatccagtgctggaatgccagcttccgagccttggcgtctcttgataaaccctgacccacctgcatcaaagctcagattttttacagcaatttcgacacaaacagaagattaatcaaggagatgcagaccaaacaaaccaaaagaatgccttcttctttttttcttaaccaaaagaatgccttcttctttttttcttgtggaattttgtggtaggctgcaggtagcagcaactgagaaacggaaggaagtaggagaccttggaagcaatgatgctgacacggctccagcgggaggcgacggtctccgggttagggtcgtggaagaaggagatggtgctgtagctcagccgcgcgtagtccagcgcttgccaccttcaaacaatccaacccacaaacttaatttctcggttaaaaaatttgattacttttagatttctattttctctacacaaattaaacagtttgaaactttgaatggatgtaggatgctcatgccataatctcaaagtccggaggctaagttccaaacagattattgagcaaatggttgtcaccgattatctacttgattattaagataaattagatatttttgatatataaacttaatagataacttaaaaacaatgagtaaagcgcataaaacggtccttaaatttgtagggttgtgacatctaggttcctaaactcacaaaatgcagatttaggtctcagaacttgtcaaagtgtatcatttaggtcccaaatcgacacaacccctatatgatcctatgtggcgctgatgtggcatgccatatggacatgacgtatccttttcttcTtttttTCCTTCCTTTTTCTTCTTTTTCTTTATTGTTTTCTTCTCATTCTTCTTTTTTTCCCTCTCTTCAGGTCACAGAGAAAGGAGAAGGAAAAAAAAGAGAAGATGGAGAAAAAGATAAGAAAATAAGAAAAAAGAAAAGGTAAAATTTGTTCGTGTGGCATGCCACATCAGTGCCACGTAGGATCCTATAGGAGTTGTGGCGATTTGGGACCTAGATGACACACTATGACAAGTTCCGGGAATTCGATATGCATTTTGAGAGTTTAGTGACCTAGATGACACACCCCTATATGTTTAAGGACCGCCTATGCACTTTACTCTAAAAACAAGTGGTCCAAGTAATATAGGTAAGTAATATAAAAataatataaaatgcattattcaaagcgtagagtaaatattcacttcatcttaatttgatcatcccataaacgaagaccacaaaaactaagaacaccaaaacatctaccattctaaaattaggtactccattgtttcgtgtccaacaaaaaaaataattcactttaaatgttgcatgggttaaaccaataaaaattaatcttgtttagttgcgtgcatacgcacatagtatttcaggatgtacatttactctttgcataaataaacaaagaaacattttgttaattagatgatgattattttggaaaaacctaaaaaatcttaggtgataatcaaattcggacagagaaaataattagtttcgataatccaataaataatctgaaaagaacaactaagtgcacaaagttcgacttaataacttaaaccgatgagcaaagatattccacatgaaggttggtgaagaatccggttaattaatcatcaccagagctcctcgacgacgacggccgtgtcggcgagcttgcgccgggtccggtagctccggtacatcttctgcagcttggtcgccgccccatcctcgccgccgccaccgccgccgcttccggccaccggagaggaaacctccgcgtcgagcctggaagagcccgcgtgatccagcccggccgccgccgtcgccaccgccat
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| CDS seq | atggcggtggcgacggcggcggccgggctggatcacgcgggctcttccaggctcgacgcggaggtttcctctccggtggccggaagcggcggcggtggcggcggcgaggatggggcggcgaccaagctgcagaagatgtaccggagctaccggacccggcgcaagctcgccgacacggccgtcgtcgtcgaggagctctggtggcaagcgctggactacgcgcggctgagctacagcaccatctccttcttccacgaccctaacccggagaccgtcgcctcccgctggagccgtgtcagcatcattgcttccaaggtgggtcagggtttatcaagagacgccaaggctcggaagctggcattccagcactggatcgaggctattgacccacggcatagatatggtcacaatctgcagtgctactatgatgtctggtgccaaagccaggccggccagccttttttctactggcttgatattggggagggaaaagatgttgaccttcctgagtgtccaagagctcagctgaagaagcaatgcataaaatatcttggtccgcaagagcgtgagcaatatgaatacatcattacagaaggaaagattatccataagtactctgaagaaccccttgatacaagccaagggtcaaaatggatttttgttatgagcacaacgaagagactttatgctggcaagaaagagaaaggtgtgttccagcactcgagctttttagcaggaggtgctaccatagctgctgggaggtttacagcagaaaatggagttatcaagtccgtctgggcctatagtggtcactacaaaccaagtgcagagaacctcagcaacttcatgaacttcctagaggagaatggagttgatctcaacaacgtggtgcgcccatccgacgatgatgcttggtatgaagaaccagttcctaataaagttcagagccctatcactgccatcattgaatccaatcctccacaattgattctcccacaaaacatggtactagaaaacaaggcatctgggtcatcttcacaagttgaaggtgccgaaggcgacaatgctgccacagagcaagcaaagccaacctaccaaagaaccttatcaggtgggctacaaagccctagagccaccatcgacgtcccgcggaaagcaattcttgagagggtgaaatccaagagggaatcaagatcctatcagcttggccacaagttgtccctgaaatggagcactggggctggtccaaggattggatgtgtgaaggactatccaatgcagctcaggatgcaggcactggagatggtgaacctctcaccaagggcttcagctccttcaacctcaaggaggctacaggcaagcctatcactctcacccaacttaccaacatctcctgagtttacaacaacccagatggctgccccaactaagttagaaccggctatgagtatctaa
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| Protein seq | MAVATAAAGLDHAGSSRLDAEVSSPVAGSGGGGGGEDGAATKLQKMYRSYRTRRKLADTAVVVEELWWQALDYARLSYSTISFFHDPNPETVASRWSRVSIIASKVGQGLSRDAKARKLAFQHWIEAIDPRHRYGHNLQCYYDVWCQSQAGQPFFYWLDIGEGKDVDLPECPRAQLKKQCIKYLGPQEREQYEYIITEGKIIHKYSEEPLDTSQGSKWIFVMSTTKRLYAGKKEKGVFQHSSFLAGGATIAAGRFTAENGVIKSVWAYSGHYKPSAENLSNFMNFLEENGVDLNNVVRPSDDDAWYEEPVPNKVQSPITAIIESNPPQLILPQNMVLENKASGSSSQVEGAEGDNAATEQAKPTYQRTLSGGLQSPRATIDVPRKAILERVKSKRESRSYQLGHKLSLKWSTGAGPRIGCVKDYPMQLRMQALEMVNLSPRASAPSTSRRLQASLSLSPNLPTSPEFTTTQMAAPTKLEPAMSI |
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| Function | IQ domain-containing protein IQM3 [UniProtKB/Swiss-Prot:Q9LFA4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0003500 | OsLaMu_11g0003500.01 | Chr11 | 2431782 | 2436104 | - | NAM | ||
| CDS seq | atggcggtggcgacggcggcggccgggctggatcacgcgggctcttccaggctcgacgcggaggtttcctctccggtggccggaagcggcggcggtggcggcggcgaggatggggcggcgaccaagctgcagaagatgtaccggagctaccggacccggcgcaagctcgccgacacggccgtcgtcgtcgaggagctctggtggcaagcgctggactacgcgcggctgagctacagcaccatctccttcttccacgaccctaacccggagaccgtcgcctcccgctggagccgtgtcagcatcattgcttccaaggtgggtcagggtttatcaagagacgccaaggctcggaagctggcattccagcactggatcgaggctattgacccacggcatagatatggtcacaatctgcagtgctactatgatgtctggtgccaaagccaggccggccagccttttttctactggcttgatattggggagggaaaagatgttgaccttcctgagtgtccaagagctcagctgaagaagcaatgcataaaatatcttggtccgcaagagcgtgagcaatatgaatacatcattacagaaggaaagattatccataagtactctgaagaaccccttgatacaagccaagggtcaaaatggatttttgttatgagcacaacgaagagactttatgctggcaagaaagagaaaggtgtgttccagcactcgagctttttagcaggaggtgctaccatagctgctgggaggtttacagcagaaaatggagttatcaagtccgtctgggcctatagtggtcactacaaaccaagtgcagagaacctcagcaacttcatgaacttcctagaggagaatggagttgatctcaacaacgtggtgcgcccatccgacgatgatgcttggtatgaagaaccagttcctaataaagttcagagccctatcactgccatcattgaatccaatcctccacaattgattctcccacaaaacatggtactagaaaacaaggcatctgggtcatcttcacaagttgaaggtgccgaaggcgacaatgctgccacagagcaagcaaagccaacctaccaaagaaccttatcaggtgggctacaaagccctagagccaccatcgacgtcccgcggaaagcaattcttgagagggtgaaatccaagagggaatcaagatcctatcagcttggccacaagttgtccctgaaatggagcactggggctggtccaaggattggatgtgtgaaggactatccaatgcagctcaggatgcaggcactggagatggtgaacctctcaccaagggcttcagctccttcaacctcaaggaggctacaggcaagcctatcactctcacccaacttaccaacatctcctgagtttacaacaacccagatggctgccccaactaagttagaaccggctatgagtatctaa
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| Protein seq | MAVATAAAGLDHAGSSRLDAEVSSPVAGSGGGGGGEDGAATKLQKMYRSYRTRRKLADTAVVVEELWWQALDYARLSYSTISFFHDPNPETVASRWSRVSIIASKVGQGLSRDAKARKLAFQHWIEAIDPRHRYGHNLQCYYDVWCQSQAGQPFFYWLDIGEGKDVDLPECPRAQLKKQCIKYLGPQEREQYEYIITEGKIIHKYSEEPLDTSQGSKWIFVMSTTKRLYAGKKEKGVFQHSSFLAGGATIAAGRFTAENGVIKSVWAYSGHYKPSAENLSNFMNFLEENGVDLNNVVRPSDDDAWYEEPVPNKVQSPITAIIESNPPQLILPQNMVLENKASGSSSQVEGAEGDNAATEQAKPTYQRTLSGGLQSPRATIDVPRKAILERVKSKRESRSYQLGHKLSLKWSTGAGPRIGCVKDYPMQLRMQALEMVNLSPRASAPSTSRRLQASLSLSPNLPTSPEFTTTQMAAPTKLEPAMSI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0151002 | RBH | 0.0 | 0.0 | 0.349506 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g05340 | RBH | 0.046403 | 0.000000 | 0.061437 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0151002 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0003500 | RBH | 0.000000 | 1.152455 | 0.125878 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0003570 | RBH | 0.000000 | 0.000000 | 0.106013 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0003470 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0003420 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0003400 | RBH | 4.492496 | 0.0 | 0.845013 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0043800 | RBH | 1.1189195 | 0.7013785 | 0.286152 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0003490 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0043400 | RBH | 0.967505 | 0.271591 | 2.077345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0003380 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0003490 | RBH | 0.105495 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0003490 | RBH | 4.840543 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0003430 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0003510 | RBH | 0.087955 | 8.598881 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G003490 | RBH | 0.0 | 0.0 | 0.307426 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0003480 | RBH | 0.190270 | 0.000000 | 0.539460 |
