Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0017300 | OGI:10060980 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:21877486-21879254 | ||||||||
| Gene Symbol | CYP89A2, OsCYP89A2 | ||||||||||
| DNA seq | acggtacgcggtgctcgcgctcactcgaagatggacacgtggcacgtcaccgtcgctgcaatcctcgtcctcatccccttcctccggctcatcctctcccgccgcggcggccgcggcggcgggaagcgcggccgcctcccgccgggtcctccggccgtgccgttgctcgggagcacggtgtggctgaccaattcgctggccgacgccgagcccctcctccggcgcctgatcgcgcggcacggccccgtcgtctccctccgcgtcgcgtccaggctgctcgtcttcgtcgccgaccgccgcctcgcgcacgcggcgctcgtcgagaagggggcgtccctggccgatcgccccgccatggcgtcgacgaggctgctcggcgagagcgacaacctcatctcgcgggccggatacgggcccgtgtggcgcctcctgcggcgcaacctcgtcgccgagacgctgcacccgtcgcgcgtgcggctgttcgcgccggcgcgcgcgtgggtgcggcgcgtgctcgtcgagaagctgcgggacgagaacggcgacgcggcggcgccacgcgccgtcgtggagacgttccagtacgccatgttctgcctcctggtgctcatgtgcttcggcgagcggctcgacgaggacgcggtgcgcgcgatctccgtcgcgcagcgggacgcgctcctctacctgtcgagcaagatgcccgtcttcgccttcttcccagcggtcaccaagcacctcttccgcgggcgcctccagaaggcgcacgcactccgccggcggcagatggagctgttcgtgccgctgatcaacgcgcggcgagagtacaagaaacggcagggcggcgccgacggcgagccgaagaaggagaccacgttcgagcactcgtacgtcgacaccctcctcgacatcaagctccccgacgacggcaaccgcccgctcaccgacgacgagatggtcaacctctgctccgagttcctcaacgccggcacggacacgacgtccaccgcgctgcagtggatcatggccgagctggtcaagaacccatccatccaagcaaagctccacgacgagatcaaatccaagaccggcggcggcggcggcggccagcgcgaggtctccgaggaggacattcacgacatgccgtacctgaaggcggtggtgctcgagggcctccggaagcacccaccggggcacatggtgctccctcacagggcggcggaggacatggagatcggcgggtacctcatccccaagggcgccacggtgaacttcatggtggccgagatgggaagggacgagaaagaatgggagaagccaatggagttcatgccggagaggttcctcgccggcggcgacggcgagggggtcgacgtcacaggcagcagggagatccggatgatgccgttcggcgttgggcggaggatttgcgccgggctcggcgtcgccatgctacatgtcgagtacttcgtggcgaacatggtgagcgagttcgagtggaaggaggtcgccggcgacgaggtggacttcgccgagaagatcgagttcacaaccgtcatggcgaagccgctgcgcgctcgtctcgtgcccagaagggcctagatcaccatgcatgtatggcttagggtcaccgtttcagtagcttagctcaatccaaatgcatgcttcttactactctcgtcgagttattaattaaacactacctagtacaataccataacctgtgttctgaatgatcagtgccgatatagtgatatggatgcttcttaatt
More
|
||||||||||
| CDS seq | atggacacgtggcacgtcaccgtcgctgcaatcctcgtcctcatccccttcctccggctcatcctctcccgccgcggcggccgcggcggcgggaagcgcggccgcctcccgccgggtcctccggccgtgccgttgctcgggagcacgaacggcgacgcggcggcgccacgcgccgtcgtggagacgttccagtacgccatgttctgcctcctggtgctcatgtgcttcggcgagcggctcgacgaggacgcggtgcgcgcgatctccgtcgcgcagcgggacgcgctcctctacctgtcgagcaagatgcccgtcttcgccttcttcccagcggtcaccaagcacctcttccgcgggcgcctccagaaggcgcacgcactccgccggcggcagatggagctgttcgtgccgctgatcaacgcgcggcgagagtacaagaaacggcagggcggcgccgacggcgagccgaagaaggagaccacgttcgagcactcgtacgtcgacaccctcctcgacatcaagctccccgacgacggcaaccgcccgctcaccgacgacgagatggtcaacctctgctccgagttcctcaacgccggcacggacacgacgtccaccgcgctgcagtggatcatggccgagctggtcaagaacccatccatccaagcaaagctccacgacgagatcaaatccaagaccggcggcggcggcggcggccagcgcgaggtctccgaggaggacattcacgacatgccgtacctgaaggcggtggtgctcgagggcctccggaagcacccaccggggcacatggtgctccctcacagggcggcggaggacatggagatcggcgggtacctcatccccaagggcgccacggtgaacttcatggtggccgagatgggaagggacgagaaagaatgggagaagccaatggagttcatgccggagaggttcctcgccggcggcgacggcgagggggtcgacgtcacaggcagcagggagatccggatgatgccgttcggcgttgggcggaggatttgcgccgggctcggcgtcgccatgctacatgtcgagtacttcgtggcgaacatggtgagcgagttcgagtggaaggaggtcgccggcgacgaggtggacttcgccgagaagatcgagttcacaaccgtcatggcgaagccgctgcgcgctcgtctcgtgcccagaagggcctag
More
|
||||||||||
| Protein seq | MDTWHVTVAAILVLIPFLRLILSRRGGRGGGKRGRLPPGPPAVPLLGSTNGDAAAPRAVVETFQYAMFCLLVLMCFGERLDEDAVRAISVAQRDALLYLSSKMPVFAFFPAVTKHLFRGRLQKAHALRRRQMELFVPLINARREYKKRQGGADGEPKKETTFEHSYVDTLLDIKLPDDGNRPLTDDEMVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQAKLHDEIKSKTGGGGGGQREVSEEDIHDMPYLKAVVLEGLRKHPPGHMVLPHRAAEDMEIGGYLIPKGATVNFMVAEMGRDEKEWEKPMEFMPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGVAMLHVEYFVANMVSEFEWKEVAGDEVDFAEKIEFTTVMAKPLRARLVPRRA |
||||||||||
| Function | Cytochrome P450 89A2 [UniProtKB/Swiss-Prot:Q42602] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0017300 | OsLaMu_10g0017300.01 | Chr10 | 21877516 | 21879084 | + | NAM | ||
| CDS seq | atggacacgtggcacgtcaccgtcgctgcaatcctcgtcctcatccccttcctccggctcatcctctcccgccgcggcggccgcggcggcgggaagcgcggccgcctcccgccgggtcctccggccgtgccgttgctcgggagcacgaacggcgacgcggcggcgccacgcgccgtcgtggagacgttccagtacgccatgttctgcctcctggtgctcatgtgcttcggcgagcggctcgacgaggacgcggtgcgcgcgatctccgtcgcgcagcgggacgcgctcctctacctgtcgagcaagatgcccgtcttcgccttcttcccagcggtcaccaagcacctcttccgcgggcgcctccagaaggcgcacgcactccgccggcggcagatggagctgttcgtgccgctgatcaacgcgcggcgagagtacaagaaacggcagggcggcgccgacggcgagccgaagaaggagaccacgttcgagcactcgtacgtcgacaccctcctcgacatcaagctccccgacgacggcaaccgcccgctcaccgacgacgagatggtcaacctctgctccgagttcctcaacgccggcacggacacgacgtccaccgcgctgcagtggatcatggccgagctggtcaagaacccatccatccaagcaaagctccacgacgagatcaaatccaagaccggcggcggcggcggcggccagcgcgaggtctccgaggaggacattcacgacatgccgtacctgaaggcggtggtgctcgagggcctccggaagcacccaccggggcacatggtgctccctcacagggcggcggaggacatggagatcggcgggtacctcatccccaagggcgccacggtgaacttcatggtggccgagatgggaagggacgagaaagaatgggagaagccaatggagttcatgccggagaggttcctcgccggcggcgacggcgagggggtcgacgtcacaggcagcagggagatccggatgatgccgttcggcgttgggcggaggatttgcgccgggctcggcgtcgccatgctacatgtcgagtacttcgtggcgaacatggtgagcgagttcgagtggaaggaggtcgccggcgacgaggtggacttcgccgagaagatcgagttcacaaccgtcatggcgaagccgctgcgcgctcgtctcgtgcccagaagggcctag
More
|
|||||||
| Protein seq | MDTWHVTVAAILVLIPFLRLILSRRGGRGGGKRGRLPPGPPAVPLLGSTNGDAAAPRAVVETFQYAMFCLLVLMCFGERLDEDAVRAISVAQRDALLYLSSKMPVFAFFPAVTKHLFRGRLQKAHALRRRQMELFVPLINARREYKKRQGGADGEPKKETTFEHSYVDTLLDIKLPDDGNRPLTDDEMVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQAKLHDEIKSKTGGGGGGQREVSEEDIHDMPYLKAVVLEGLRKHPPGHMVLPHRAAEDMEIGGYLIPKGATVNFMVAEMGRDEKEWEKPMEFMPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGVAMLHVEYFVANMVSEFEWKEVAGDEVDFAEKIEFTTVMAKPLRARLVPRRA
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0017300 | OsLaMu_10g0017300.02 | Chr10 | 21877486 | 21879254 | + | IsoSeq | ||
| CDS seq | atgggagaagccaatggagttcatgccggagaggttcctcgccggcggcgacggcgagggggtcgacgtcacaggcagcagggagatccggatgatgccgttcggcgttgggcggaggatttgcgccgggctcggcgtcgccatgctacatgtcgagtacttcgtggcgaacatggtgagcgagttcgagtggaaggaggtcgccggcgacgaggtggacttcgccgagaagatcgagttcacaaccgtcatggcgaagccgctgcgcgctcgtctcgtgcccagaagggcctagatcaccatgcatgtatg
More
|
|||||||
| Protein seq | MGEANGVHAGEVPRRRRRRGGRRHRQQGDPDDAVRRWAEDLRRARRRHATCRVLRGEHGERVRVEGGRRRRGGLRREDRVHNRHGEAAARSSRAQKGLDHHACM |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.927534 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0515200 | RBH | 1.399308 | 1.318023 | 3.455454 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g37110 | RBH | 0.863940 | 0.566457 | 0.812098 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0515200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0017100 | RBH | 1.981599 | 0.0 | 2.003459 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0017400 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0016900 | RBH | 1.274165 | 0.0 | 2.992471 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0017340 | SBH | 0.437253 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0017080 | SBH | 10.465844 | 0.000000 | 9.528257 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0327100 | RBH | 9.0585545 | 3.112454 | 5.5848925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0017000 | RBH | 0.337073 | 0.0 | 0.631938 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0350300 | RBH | 13.2540015 | 7.7624425 | 1.3795845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0016750 | SBH | 0.0 | 0.024326 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0016630 | RBH | 1.898483 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0017210 | RBH | 34.870583 | 5.222698 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0016840 | SBH | 0.652995 | 0.0 | 0.432273 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0001120 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G016910 | RBH | 0.705905 | 0.0 | 0.401406 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0017120 | SBH | 1.875026 | 0.0 | 4.738673 |
