Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0014990 | OGI:01011440 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:20088009-20091654 | ||||||||
| Gene Symbol | DLN238, OsDLN238 | ||||||||||
| DNA seq | atggataaacaagtgaagaaccacagaccttctgatggtacggatggatcaaggtatgttctgtttcagtgatttaTtttagtatgtgccgctggttttttttctctgaattttgccgtgtgaacttgagcaattctaaatcatcaattcagggaaattcttatggacgagcgcaaccctaccatggacatagtagatggtattagtcaatctgtccatgattcacaaccggatggtggtcagtcaaggttggatcgtagcttccgtgaatttaaaactctgtaaatggtagccagatactgacacatcttgattgtgttatgaagccgtgtagcaatggaggaggacgtgccgtcgcgggttggctcacatgattcagggcatggaattccagagacaaggtatgtgcatggctaggtgtcagctgagcattcactttaaagcagtatatactacatagaaatgttcagtatgtgttacatgagaaagttcagtatatgctatcttctaggaaagttcagtatgtatcacatagaaaagttcagtatgtgctatattgcagaggagttcagtatgttgcacagaaaattcagaacatgctatatgctgtcgtataacaaagttcagtacatagtctcccatagaaaaattcagtatatatgtgaaaaattcagtaaatactagtgcgtatcaaagttcagactacgaatcactatggaaagatttagtatacatgtggaaaatgcagtatatgctatcgtctagagaaattcagtacgtaacccatagaaaaattcagtacatactatcattcaacataaatcagaaagaacccctccattttaaaaaatgagtatatacaatcatctaacaaagttcagaacaaagctccccataTttttttgttagtagtacaacatattttttttttAaaatttgcagtaagtactgattataaattaggttgttttttgtaaactacattttcagttagtagtagtatatgctatttttaaatatagtgtctccaatacagaaatttggtcccttcactggattggacagaaggaaacccatatgaaaaagaaggagctgggataccaatggaaaggtttgtatcagcatgttacggatttttacgttttttgagccaggatattggtggtatttctgaaaactgattgtacattttctttcagaatggtggtagataatgttgatagcagtgctgtcatacctcctgagtatgctgatcctcaaattcttactccgatgctgggacaaagatttaagactgagagggatgcctataatttttataatttatgctgttagcaaaggatttgggatacgactggacaaagatcgcatgaatactgaaaagcagagaacaatgcggcaaatatgttgttctcaccaggtacatacattatgtaacaatatcttagtagcagaaatttacctaaataaagacttgacgtactatgtgttaatttactatgtgttaatttcgaaatcttttatgcaggggaggaacccaaaaaccaagaagccttccgttcgaattgggtgcaccaatgatgaagataaataggtctggagctggtagggctggtcgtaacaaaggttgtttctgcgcacaaccatcctatgaaaaaaagtgtggagttactaagaattatcagtcgcacaatcaaatagatgaggggactcgtggtattattgaagagatggtagtatgagtcttacaaatatgtatggtatgttgtctggatgcatggcggaccttccatggttccattcacgagaaaagctaggataggcttgcttatgcaattaggcgggatgagagcagcgatgacatgcaaaaaacaactgatgtcttgaaggatttgcaaaaaaaggagcaaaatttcttttatagtatacaagttgacgaggcttgcgtgtgaagaacatattttggtctcatgctgtgtccagattgaactttgagcattttggtgatgtcatcacatttgatactacctacaaaacaaacaagtataatatgccctttgcaccatttgttggtgtaaacaatcactttcagagcaccttctttggttgtgccctgcttagaagagagagactgaagaatcattacatggttattcaatacattcaaagagtgcatgaatgggaaggtttctattgaatattaacaggtatgtgagtatttggccgaatttataatttggaatgaattcgtatactttacttatttaagtatatgatgggttattcattggatgcttattattgtccttaattttgcagacaattgtccttccatggcagctgccattagaacagtatttcccaatacaatccatcgtgtgtgcaagtggcatgtactgaagaaagcaaaggaatttatggggaacaatactccaagcgtcatacattcaagaaagcattcataaggttcttacgcagacactaacaaaggaggagttgttgcggcttggcacaaactgattagagattataatctggaaaaaagtgtttacttgcgtcacatatgggacataaggcgtaaatgggcatttgtatattttcccataggttctttgttgggatgactactacacagaagtgagtctgcaaatcatgtgttaagatgtttgtgtcaccctctagctctatgaatggctttgttaagaggtacgaccggttttcaatgagaagctgcaaaaagaggactcggaggaattccaaaccagtaatgtaagtatccactgtgataggtttgttgacctctttttatggatatgtgtaatcaacatttggtgtcgcttggtgcaggacaaggttgaaattaaaacaaggtcaccgatagagattcacgcatcccaagtatatactagggctgttttccaattgttctctgaggagttaaccgatagtctatcttacatggtgaaactggggaggacgaaagcaccgtgcaagttgtacggatgaactcgcaagaatcattccttaggaaggaatatcaggtgtcttgtgatttggaaagagaggaattttcatgcgtttgcaagatgtttgagcataaggggattctgtgcagccaaatcttaagggtatttgtttcttctactgtctaaacatttattttcattgggtcgtactatatgttcggtagtgtttggctttttgaagtaatgcattggtttgtcctttaggtacttgttagtggtttgtcaagaattccagagaggtatatactgaaaagatggacgaaggatgctcgggatactataccacctcatctacatgggtacaaagatgatgtcgatgcttcacaatcgaggagttacagacatgtaatgctgaataggagactgtggaggtggctaagattgctaacaaagatgtgcagacatttaagatggcaatgacagtcatgaataagcttttggaggacatgaaaaatcagttatctttggatgatggtgacaatagtagagaagctccgaagcgagcagctaggcataaatcaaggtctactgtattgactgaagatggaaacgaagatgttggtggaggtgatgaggacagtgagtatgacgtgccaagtgaggacgagggtggaaattga
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| CDS seq | atggataaacaagtgaagaaccacagaccttctgatggtacggatggatcaagggaaattcttatggacgagcgcaaccctaccatggacatagtagatggtattagtcaatctgtccatgattcacaaccggatggtggtcagtcaagccgtgtagcaatggaggaggacgtgccgtcgcgggttggctcacatgattcagggcatggaattccagagacaagaaatttggtcccttcactggattggacagaaggaaacccatatgaaaaagaaggagctgggataccaatggaaaggggaggaacccaaaaaccaagaagccttccgttcgaattgggtgcaccaatgatgaagataaataggtctggagctggtagggctggtcgtaacaaaggttgtttctgcgcacaaccatcctatgaaaaaaagtgtggagttactaagaattatcagtcgcacaatcaaatagatgaggggactcgtggtattattgaagagatggtacgaccggttttcaatgagaagctgcaaaaagaggactcggaggaattccaaaccagtaatgacaaggttgaaattaaaacaaggtcaccgatagagattcacgcatcccaagagactgtggaggtggctaagattgctaacaaagatgtgcagacatttaagatggcaatgacagtcatgaataagcttttggaggacatgaaaaatcagttatctttggatgatggtgacaatagtagagaagctccgaagcgagcagctaggcataaatcaaggtctactgtattgactgaagatggaaacgaagatgttggtggaggtgatgaggacagtgagtatgacgtgccaagtgaggacgagggtggaaattga
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| Protein seq | MDKQVKNHRPSDGTDGSREILMDERNPTMDIVDGISQSVHDSQPDGGQSSRVAMEEDVPSRVGSHDSGHGIPETRNLVPSLDWTEGNPYEKEGAGIPMERGGTQKPRSLPFELGAPMMKINRSGAGRAGRNKGCFCAQPSYEKKCGVTKNYQSHNQIDEGTRGIIEEMVRPVFNEKLQKEDSEEFQTSNDKVEIKTRSPIEIHASQETVEVAKIANKDVQTFKMAMTVMNKLLEDMKNQLSLDDGDNSREAPKRAARHKSRSTVLTEDGNEDVGGGDEDSEYDVPSEDEGGN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0014990 | OsLaMu_10g0014990.01 | Chr10 | 20088009 | 20091654 | + | NAM | ||
| CDS seq | atggataaacaagtgaagaaccacagaccttctgatggtacggatggatcaagggaaattcttatggacgagcgcaaccctaccatggacatagtagatggtattagtcaatctgtccatgattcacaaccggatggtggtcagtcaagccgtgtagcaatggaggaggacgtgccgtcgcgggttggctcacatgattcagggcatggaattccagagacaagaaatttggtcccttcactggattggacagaaggaaacccatatgaaaaagaaggagctgggataccaatggaaaggggaggaacccaaaaaccaagaagccttccgttcgaattgggtgcaccaatgatgaagataaataggtctggagctggtagggctggtcgtaacaaaggttgtttctgcgcacaaccatcctatgaaaaaaagtgtggagttactaagaattatcagtcgcacaatcaaatagatgaggggactcgtggtattattgaagagatggtacgaccggttttcaatgagaagctgcaaaaagaggactcggaggaattccaaaccagtaatgacaaggttgaaattaaaacaaggtcaccgatagagattcacgcatcccaagagactgtggaggtggctaagattgctaacaaagatgtgcagacatttaagatggcaatgacagtcatgaataagcttttggaggacatgaaaaatcagttatctttggatgatggtgacaatagtagagaagctccgaagcgagcagctaggcataaatcaaggtctactgtattgactgaagatggaaacgaagatgttggtggaggtgatgaggacagtgagtatgacgtgccaagtgaggacgagggtggaaattga
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| Protein seq | MDKQVKNHRPSDGTDGSREILMDERNPTMDIVDGISQSVHDSQPDGGQSSRVAMEEDVPSRVGSHDSGHGIPETRNLVPSLDWTEGNPYEKEGAGIPMERGGTQKPRSLPFELGAPMMKINRSGAGRAGRNKGCFCAQPSYEKKCGVTKNYQSHNQIDEGTRGIIEEMVRPVFNEKLQKEDSEEFQTSNDKVEIKTRSPIEIHASQETVEVAKIANKDVQTFKMAMTVMNKLLEDMKNQLSLDDGDNSREAPKRAARHKSRSTVLTEDGNEDVGGGDEDSEYDVPSEDEGGN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0020800 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025740 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0006030 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0014750 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0297900 | RBH | 0 | 0.0042965 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0320400 | RBH | 0 | 0.016338 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0013390 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0033150 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0014750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004900 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G014680 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0014670 | RBH | 0.0 | 0.0 | 0.0 |
