Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0012590 | OGI:10050950 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:17637571-17642092 | ||||||||
| Gene Symbol | CDC48E, OsCDC48E, OsCDC48-2, CDC48-2 | ||||||||||
| DNA seq | ctcccaaatctcatcgccttctccgccatcgccgccgtgcacgcgctcgaattaacgccgccgccgccgccgccgccgccaaccaccgcccgccgccGggtgcgccgccgcgatggcgagccaGggggagccctcgtcgtccgccgatccgtaagttccgcgccccgatctggcctgctagggtttcgtttcgtttccccgatctgggtattGgggggtgcttagggtttgatggtttatggtggtgggtggtttgggggtttggttgcaggaaggggaagaaggactactcgacggcgatcctggagaggaagaagtcgccgaaccggctggtggtggacgaggccaccaatgacgacaactccgtcgtcgcgctgcacccggacaccatggagaggctgcagctcttccgcggcgacaccgtcctcctcaaggtacgatgccgcggggccgatctgtgagctgtttagcttttgggattcggagatatttacttgtttagtcgttgatggtgatatcatggatgtttgggttatcgtagagccgatctgatctgctgccgctgtccacgaaattagaattagttacagatctgttgagaacaaaatcgtaaatttgtcagtatacatgtctgatgtctaggataacacgaaattcactgttttgatggaaTtttgagtagaatgatatggtttgtaggtgttatattgcagcctttggttaaaagtgttgcattgcggccttccttcagtttgaaggagtgatcgaaatattagtcagtgatgtaccgcatgttgtagttcgtgttcttcatagtcacccacctttaactctgttgtgcaagataccactctattttataccatacatgatgtttgaacttgtgttaaatgcggttattggtgtggAaatgatcaagaataatatttgcatatgtaaacatgtgcacattaatattggttgaaatttcatacaagagtctcaatgagatacatgtaattctctctaacatgtacatataaaggtcatctttttgtaaggttgTtttttgatgatcagtctaatctatacatattAacagacaatggagtttgcacctaaatgtgtggactgttgttgctgttagcatctcaTttttgttctaacctttcctatgttttgcactatatagggcaagaagaggaaagatactatttgcattgtccttgcggacgaaacctgtgaggagcccaagattaggatgaacaaggttgtcaggaagaacctgagggtgcgacttggtgatgttgtttctgtccaccagtgccaggatgtgaaatacgggaaacgtgtgcacattcttccgattgatgatacagttgaaggcattaccgggaacctgtttgatgccttcctgaagcgtgagttcataaccttagaatctttgtttatctgcttttctcagaacattttttcattatgAtgtgaatgtgaaacagcagatcatacatagcattgtactaattcaaccctcttctgaaaatgcgcaGcatacttcttagaagcataccgcccagtgaggaaaggagatctcttccttgtcaGgggtggaatgagaagtgtggaattcaaagtcatagagactgaccctactgagtattgcatcgttgcaccagatacagaaatattctgtgatggggagcctattAagagggaagatgaggaaaggcttgatgaggttggATatgatgatgttggtggagttagaaaacagatggctcaaatcagagagcttgttgagcttccactgcgtcatccccaacttttcaaatccattggtgtgaagccaccaaagggcatattgctgtatggaccacctggttctggaaaaaccctcattgctcgtgctgttgcaaatgagactggagcctttttctttttgattaatggacctgagattatgtcaaagctagctggagagagtgagagcaatctcaggaaggcatttgaagaagcagagaagaatgcaccatctatcattttcattgatgagattgattccattgctcccaagagagagaagaccaatggagaagtggaacgtcgtattgtttcacagctgttgactcttatggatggactcaaagctcgttctcatgttattgttatgggtgctacaaaccgtcccaacagcattgatcctgctcttcggaggtttggaaggtttgaccgtgagattgacattggtgtCcctgatgaggttgggcggcttgaggttcttcgtattcacactaagaacatgaagctagctgaagatgtaagtgtgttcaatcatgattccttgtttctggtgttattttattcataatttatctttctcttgaagttctcatcacttacatatcacttttcttaatgaacaggttgaTttggaactcattgcgaaggatactcatggatatgttggtgctgatcttgctgccctttgcactgaggctgctcttcagtgcattcgtgagaagatggatatcatagatcttgaggacgagacaatagatgctgagatattgaactcgatggctgtcacaaatgaccatttcaaaaccgcgcttggtacaagcaacccatctgctcttcgtgaaactgtgagtttcttcaggagtactgttatacttatttgctcgcatatttggcttctttctgtttagAggtactaaagTttctgtcttcaggttgttgaagttcctaatgtctcatgggaggacattggtgggctggagaatgtcaagagggagctgcaggaggtaaacatgcttgtttattttatatatgctatatatatttgctgcttctggcttgcactatacagcctatttatgtacttgaattcctgcagactgtccaatatccagtggagcacccagagaagtttgagaagttTGgaatgtctccatccaaaggagttctgttctatggccctcctggctgtggtaagaccttgttggccaaggcAattgccaatgagtgccaggcaaacttcatcagtgtgaagggcccagagttgCtcaccatgtggtttggagagagtgaagctaatgttcgtgagatatttgacaaggcccgccagtcTgcaCcatgtgtgctcttcttcgacgagcttgactcaattgctactcaggtctacttgccttCcccacatccactcctgttTAtttttaccatatattccgTtacttgaagatttccttgccctgttgcagagaggAagcaGTgTgggtgatgctggAggtgcagctgatagggtgctgaatcagctgttgacagagatggatggcatgaatgccaagAagactgttttcattattggggctacaaacaggcctgacatcatagatccggccttgcttaggccagggcgtctcgatcagctgatctacattccactgcctgatgagcaatctaggctccaaattttcaaagcttgcctcaggaagtcccctgtggcgAaggatgtggacTtgaacgctcttgccaagtacacccaaggcttcagtggtgcagatattacagaaatctgtcagcgtgcatgcaaatatgcgattagagagaacatcgagaaggtaTtttcatctaaccttgcaaatagcacaatttttattcatgtgcagctcatccgtattacaacaaactagatgtaaggacgtttctggctttcagtattacacgaggctatgttatgttctatgttcatgactaCttttgtttaagatctgccactcctagaattgcagttgtctatatgagattatgcccatgttCcctttgtatTATAtatatatatatatatatatatatatatacttatatataGttgggcctgatttgttacaaTtttatctgtgtaagcactcttattcagaatgcattgaTtgatatggtagAaatcttttatgcagttaataattcTtttcttatcgtgtttgtttcaggacattgagagggaaaggCggagtaaggagaaccctgaagcgatggaggAagacgaagtcgacgacattgctgagatcaaggcagcccacttcgaGgagtcgatgaagtacgcgcgccgcagtgtcagcgatgccgatatccgcaagtaccaggcgttcgcccagacgttgcagcagtctcgcgggtttggcagtgagttccgtttcgagcggacagaagctggtgctggagctgcggctgatccttttgcgtctgctgccgccgtcgctgatgacgacgatttatatagttaggttgcctgttgtgtccttcgttagctcgccctccgagtttgtgttcaatatTGgTtccatctgccatgcctttgtgttgaaactaatcgtacttgaaacacggcaaagccctctggtTAtatttattttcagtgcaatagggtgctgcttggctgaggacgatgccctcggcctaagccgttgccctcctgtggctggctactggAcgatgacaatttctgaatttcccaacaatatacagctaTttttttatActtctc
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| CDS seq | atggcgagccaGggggagccctcgtcgtccgccgatccgaaggggaagaaggactactcgacggcgatcctggagaggaagaagtcgccgaaccggctggtggtggacgaggccaccaatgacgacaactccgtcgtcgcgctgcacccggacaccatggagaggctgcagctcttccgcggcgacaccgtcctcctcaagggcaagaagaggaaagatactatttgcattgtccttgcggacgaaacctgtgaggagcccaagattaggatgaacaaggttgtcaggaagaacctgagggtgcgacttggtgatgttgtttctgtccaccagtgccaggatgtgaaatacgggaaacgtgtgcacattcttccgattgatgatacagttgaaggcattaccgggaacctgtttgatgccttcctgaagccatacttcttagaagcataccgcccagtgaggaaaggagatctcttccttgtcaGgggtggaatgagaagtgtggaattcaaagtcatagagactgaccctactgagtattgcatcgttgcaccagatacagaaatattctgtgatggggagcctattAagagggaagatgaggaaaggcttgatgaggttggATatgatgatgttggtggagttagaaaacagatggctcaaatcagagagcttgttgagcttccactgcgtcatccccaacttttcaaatccattggtgtgaagccaccaaagggcatattgctgtatggaccacctggttctggaaaaaccctcattgctcgtgctgttgcaaatgagactggagcctttttctttttgattaatggacctgagattatgtcaaagctagctggagagagtgagagcaatctcaggaaggcatttgaagaagcagagaagaatgcaccatctatcattttcattgatgagattgattccattgctcccaagagagagaagaccaatggagaagtggaacgtcgtattgtttcacagctgttgactcttatggatggactcaaagctcgttctcatgttattgttatgggtgctacaaaccgtcccaacagcattgatcctgctcttcggaggtttggaaggtttgaccgtgagattgacattggtgtCcctgatgaggttgggcggcttgaggttcttcgtattcacactaagaacatgaagctagctgaagatgttgaTttggaactcattgcgaaggatactcatggatatgttggtgctgatcttgctgccctttgcactgaggctgctcttcagtgcattcgtgagaagatggatatcatagatcttgaggacgagacaatagatgctgagatattgaactcgatggctgtcacaaatgaccatttcaaaaccgcgcttggtacaagcaacccatctgctcttcgtgaaactgttgttgaagttcctaatgtctcatgggaggacattggtgggctggagaatgtcaagagggagctgcaggagactgtccaatatccagtggagcacccagagaagtttgagaagttTGgaatgtctccatccaaaggagttctgttctatggccctcctggctgtggtaagaccttgttggccaaggcAattgccaatgagtgccaggcaaacttcatcagtgtgaagggcccagagttgCtcaccatgtggtttggagagagtgaagctaatgttcgtgagatatttgacaaggcccgccagtcTgcaCcatgtgtgctcttcttcgacgagcttgactcaattgctactcagagaggAagcaGTgTgggtgatgctggAggtgcagctgatagggtgctgaatcagctgttgacagagatggatggcatgaatgccaagAagactgttttcattattggggctacaaacaggcctgacatcatagatccggccttgcttaggccagggcgtctcgatcagctgatctacattccactgcctgatgagcaatctaggctccaaattttcaaagcttgcctcaggaagtcccctgtggcgAaggatgtggacTtgaacgctcttgccaagtacacccaaggcttcagtggtgcagatattacagaaatctgtcagcgtgcatgcaaatatgcgattagagagaacatcgagaaggacattgagagggaaaggCggagtaaggagaaccctgaagcgatggaggAagacgaagtcgacgacattgctgagatcaaggcagcccacttcgaGgagtcgatgaagtacgcgcgccgcagtgtcagcgatgccgatatccgcaagtaccaggcgttcgcccagacgttgcagcagtctcgcgggtttggcagtgagttccgtttcgagcggacagaagctggtgctggagctgcggctgatccttttgcgtctgctgccgccgtcgctgatgacgacgatttatatagttag
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| Protein seq | MASQGEPSSSADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHILPIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLELIAKDTHGYVGADLAALCTEAALQCIREKMDIIDLEDETIDAEILNSMAVTNDHFKTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEQSRLQIFKACLRKSPVAKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRSKENPEAMEEDEVDDIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFERTEAGAGAAADPFASAAAVADDDDLYS |
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| Function | Cell division cycle protein 48 homolog [UniProtKB/Swiss-Prot:P54774] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0012590 | OsLaMu_10g0012590.01 | Chr10 | 17637571 | 17642092 | + | NAM | ||
| CDS seq | atggcgagccaGggggagccctcgtcgtccgccgatccgaaggggaagaaggactactcgacggcgatcctggagaggaagaagtcgccgaaccggctggtggtggacgaggccaccaatgacgacaactccgtcgtcgcgctgcacccggacaccatggagaggctgcagctcttccgcggcgacaccgtcctcctcaagggcaagaagaggaaagatactatttgcattgtccttgcggacgaaacctgtgaggagcccaagattaggatgaacaaggttgtcaggaagaacctgagggtgcgacttggtgatgttgtttctgtccaccagtgccaggatgtgaaatacgggaaacgtgtgcacattcttccgattgatgatacagttgaaggcattaccgggaacctgtttgatgccttcctgaagccatacttcttagaagcataccgcccagtgaggaaaggagatctcttccttgtcaGgggtggaatgagaagtgtggaattcaaagtcatagagactgaccctactgagtattgcatcgttgcaccagatacagaaatattctgtgatggggagcctattAagagggaagatgaggaaaggcttgatgaggttggATatgatgatgttggtggagttagaaaacagatggctcaaatcagagagcttgttgagcttccactgcgtcatccccaacttttcaaatccattggtgtgaagccaccaaagggcatattgctgtatggaccacctggttctggaaaaaccctcattgctcgtgctgttgcaaatgagactggagcctttttctttttgattaatggacctgagattatgtcaaagctagctggagagagtgagagcaatctcaggaaggcatttgaagaagcagagaagaatgcaccatctatcattttcattgatgagattgattccattgctcccaagagagagaagaccaatggagaagtggaacgtcgtattgtttcacagctgttgactcttatggatggactcaaagctcgttctcatgttattgttatgggtgctacaaaccgtcccaacagcattgatcctgctcttcggaggtttggaaggtttgaccgtgagattgacattggtgtCcctgatgaggttgggcggcttgaggttcttcgtattcacactaagaacatgaagctagctgaagatgttgaTttggaactcattgcgaaggatactcatggatatgttggtgctgatcttgctgccctttgcactgaggctgctcttcagtgcattcgtgagaagatggatatcatagatcttgaggacgagacaatagatgctgagatattgaactcgatggctgtcacaaatgaccatttcaaaaccgcgcttggtacaagcaacccatctgctcttcgtgaaactgttgttgaagttcctaatgtctcatgggaggacattggtgggctggagaatgtcaagagggagctgcaggagactgtccaatatccagtggagcacccagagaagtttgagaagttTGgaatgtctccatccaaaggagttctgttctatggccctcctggctgtggtaagaccttgttggccaaggcAattgccaatgagtgccaggcaaacttcatcagtgtgaagggcccagagttgCtcaccatgtggtttggagagagtgaagctaatgttcgtgagatatttgacaaggcccgccagtcTgcaCcatgtgtgctcttcttcgacgagcttgactcaattgctactcagagaggAagcaGTgTgggtgatgctggAggtgcagctgatagggtgctgaatcagctgttgacagagatggatggcatgaatgccaagAagactgttttcattattggggctacaaacaggcctgacatcatagatccggccttgcttaggccagggcgtctcgatcagctgatctacattccactgcctgatgagcaatctaggctccaaattttcaaagcttgcctcaggaagtcccctgtggcgAaggatgtggacTtgaacgctcttgccaagtacacccaaggcttcagtggtgcagatattacagaaatctgtcagcgtgcatgcaaatatgcgattagagagaacatcgagaaggacattgagagggaaaggCggagtaaggagaaccctgaagcgatggaggAagacgaagtcgacgacattgctgagatcaaggcagcccacttcgaGgagtcgatgaagtacgcgcgccgcagtgtcagcgatgccgatatccgcaagtaccaggcgttcgcccagacgttgcagcagtctcgcgggtttggcagtgagttccgtttcgagcggacagaagctggtgctggagctgcggctgatccttttgcgtctgctgccgccgtcgctgatgacgacgatttatatagttag
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| Protein seq | MASQGEPSSSADPKGKKDYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVLLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHILPIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLELIAKDTHGYVGADLAALCTEAALQCIREKMDIIDLEDETIDAEILNSMAVTNDHFKTALGTSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEQSRLQIFKACLRKSPVAKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRSKENPEAMEEDEVDDIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFERTEAGAGAAADPFASAAAVADDDDLYS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.180871 | 73.818558 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0442600 | RBH | 16.061123 | 12.774312 | 64.185112 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g30580 | RBH | 12.379710 | 9.893706 | 15.999517 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0442600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0012370 | RBH | 4.702830 | 134.933975 | 52.442780 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0012570 | RBH | 2.134423 | 41.253407 | 24.232916 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0012310 | RBH | 7.163157 | 145.084579 | 74.412971 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0012580 | RBH | 0.747205 | 5.093702 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0012330 | RBH | 33.956795 | 230.153763 | 131.585526 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0265300 | RBH | 67.178272 | 106.9792325 | 108.5330085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0012360 | RBH | 1.494198 | 10.427302 | 12.247661 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0285300 | RBH | 25.922183 | 34.989481 | 34.823198 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0012100 | RBH | 1.487860 | 2.613106 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0012070 | RBH | 2.643445 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0012490 | RBH | 28.928921 | 205.673386 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0012080 | RBH | 0.000000 | 0.0 | 3.938203 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0003980 | RBH | 3.160825 | 51.384876 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G012440 | RBH | 2.249482 | 59.661762 | 24.051725 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0012380 | RBH | 6.436842 | 112.470284 | 67.576920 |
