Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0007501 | OGI:10034570 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:11626335-11629039 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cttcagtaatatatgtactcattcatgacgttgtttccccgcacataaggcctatgactggtaagaaaacaccgattcagctctagcagttacaatagaaaccatgttgtattcttgctactaacgcactagaaagtagcacatattttgtgtgcatttataggttatttcaacaccaaaatttacaccaacacacagactcaactagtacacaatgaaatccgcatgacgcttatttgcatagttgctcaagggaatgctgaaacaaatgcagagaaacaagttcgatatgtgcaagaactaacgagatttatttattggcagctggctcgggagatttggcgagttacccccgagttagcttcccctttcaaaaccagcaactgtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaacttgacaaggcgagacactgatcgtcccaacctgatctccatagtgcagcttgatacgtgaattctggctgctgctggaccaaagcagagcttcatggaggctaccttcctcccacctgatgttgatggtcacaccgcctcgggccttgagacctttcacacaaccttgaggccacttatcacggggtaaggcagggagcaagtacaagtcgctcccggtgctctgtaccagcatttctgacagtgcagcagggaatctgtaatagaacaattaggacatgcataaactgcattagaaagtgagcagatgtaactgttacttcctccgtttcataatgtaagtctttctagcattgcccacattcatatagatgttaactgtttctccttgccttacattcatatagatgtaagtctttctagacacacatatatatttagatttattaacatctatataaatgtggacaatgctagaaagtcttacattatgaaacggaaggagtattagggctctttatagcctggcataattttctggcagtttgttttaacttctaagatggcaggtcaaagagaggtgtaattccataatgtttctgcatgattagtaaggttctaaattattgatggagctagataatcaggtttacccaaaatttgcatcaatttggaaaggtgggtgtgctgtgaacagattgcagtataggcctccttccttttcaacctcatgttttggatctaccaaagtgatcagctgaagaatcattttatatgcatgctcactgttatgaagatgggcccaaagggccatcttccaggaagtggaccacccaggaccttcatcacctaatcagtggatgacaagtcagatctcatggcagaatagactgaattggaattgttcttaaaacagatgtttgagaaagtcgttgaatgtatacaaggtaaaagtttctagcactacaagtgtcaagaaatcattaataactattaaagactggtttcctatccaactgaaaagtaagattaacattacttgaaaacttgaatacgactatacgagagaacatttactgtgtcaccagataattcgatagttgaaacatgttgtccaaatgaataaggtgaggagcctttgcaagaaggatgtgaaagcgctttatgacttcaaacagaactattctaacgtttagtattcctaacgaacaaaggcacttagcttaagtcttttctcttcttttaactctctcgaattttactccctccatccacaaaagttagatatatttcacatttgagttttccaaataagttgttcatatttgtagtctttatgcatttaagacttaaatgaagagataaattaaatatttgatgagaacccaaggagtcatctaaatactcattgattgcatgcttacatttactccttaattttgttacatccaagatgatttaatttctccttggtcttggtgacaaaagtaatatgtgtaacttttggggatggagggagtagtgctgtttgtagtctacaaatggctcctgtgtctgttgaaccaagttgctcctgttttaatattgtacattaaattccttttttttcttcccctctaatgcaataggcagagttccagtccttttcttcattaaaagaataacacaagaagtattcattattcaatagtcattctgaatcagagctattggttatttcaattctctaggacaaatatatgcagttatcacaattatattgtgtacccaattgttccaagttatctttctatgcataaatcattgaccacctgagctgatcaggatgatcagcgtctgattgaagatgtataacctcattggaaattttttctagttcacttgaaacagtcgtgccaacaagtatgccagaagaattgcacaaaactgtaaaatgatcaccaatattaaatcaggagttatttgctctatatggacccgtcacaaagagaagttgattatcaaggcaaaccgaaatgactgtgagagatgcaacaattagttccaatctaacaaatatcctatttaaggtgaagacaatgaaaacttgagaaggagaaaaaactagaactatgcacatttttatacaaacaggtacctcttttatagagactatttgcaacggctttgcaaaggtcaggtgttttctcaagtgacatagtatgtcctggataaagaccaaacaggtgagatacatgtctgtggtgaacttcaggatcctga
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| CDS seq | caggatcctgaagttcaccacagacatgtatctcacctgtttggtctttatccaggacatactatgtcacttgagaaaacacctgacctttgcaaagccgttgcaaatagtctctataaaagaggtgatgaaggtcctgggtggtccacttcctggaagatggccctttgggcccatcttcataacagtgagcatgcatataaaatgattcttcagctgatcactttggtagatccaaaacatgaggttgaaaaggaaggaggcctatactgcaatctgttcacagcacacccacctttccaaattgatgcaaattttggattccctgctgcactgtcagaaatgctggtacagagcaccgggagcgacttgtacttgctccctgccttaccccgtgataagtggcctcaaggttgtgtgaaaggtctcaaggcccgaggcggtgtgaccatcaacatcaggtgggaggaaggtagcctccatgaagctctgctttggtccagcagcagccagaattcacgtatcaagctgcactatggagatcaggttgggacgatcagtgtctcgccttgtcaagtttacaggttcagcaaggatctgaagtgcttgaagacttgggct
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| Protein seq | QDPEVHHRHVSHLFGLYPGHTMSLEKTPDLCKAVANSLYKRGDEGPGWSTSWKMALWAHLHNSEHAYKMILQLITLVDPKHEVEKEGGLYCNLFTAHPPFQIDANFGFPAALSEMLVQSTGSDLYLLPALPRDKWPQGCVKGLKARGGVTINIRWEEGSLHEALLWSSSSQNSRIKLHYGDQVGTISVSPCQVYRFSKDLKCLKTWA |
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| Function | Alpha-L-fucosidase 2 [UniProtKB/Swiss-Prot:Q8L7W8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0007501 | OsLaMu_10g0007501.01 | Chr10 | 11626335 | 11626561 | - | IsoSeq | ||
| CDS seq | atgcacacaaaatatgtgctactttctagtgcgttagtagcaagaatacaacatggtttctattgtaac |
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| Protein seq | MHTKYVLLSSALVARIQHGFYCN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0007501 | OsLaMu_10g0007501.02 | Chr10 | 11626449 | 11629039 | - | IsoSeq | ||
| CDS seq | caggatcctgaagttcaccacagacatgtatctcacctgtttggtctttatccaggacatactatgtcacttgagaaaacacctgacctttgcaaagccgttgcaaatagtctctataaaagaggtgatgaaggtcctgggtggtccacttcctggaagatggccctttgggcccatcttcataacagtgagcatgcatataaaatgattcttcagctgatcactttggtagatccaaaacatgaggttgaaaaggaaggaggcctatactgcaatctgttcacagcacacccacctttccaaattgatgcaaattttggattccctgctgcactgtcagaaatgctggtacagagcaccgggagcgacttgtacttgctccctgccttaccccgtgataagtggcctcaaggttgtgtgaaaggtctcaaggcccgaggcggtgtgaccatcaacatcaggtgggaggaaggtagcctccatgaagctctgctttggtccagcagcagccagaattcacgtatcaagctgcactatggagatcaggttgggacgatcagtgtctcgccttgtcaagtttacaggttcagcaaggatctgaagtgcttgaagacttgggct
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| Protein seq | QDPEVHHRHVSHLFGLYPGHTMSLEKTPDLCKAVANSLYKRGDEGPGWSTSWKMALWAHLHNSEHAYKMILQLITLVDPKHEVEKEGGLYCNLFTAHPPFQIDANFGFPAALSEMLVQSTGSDLYLLPALPRDKWPQGCVKGLKARGGVTINIRWEEGSLHEALLWSSSSQNSRIKLHYGDQVGTISVSPCQVYRFSKDLKCLKTWA
More
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 8.365746 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0339600 | RBH | 4.195543 | 3.294156 | 8.855697 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g19880 | RBH | 2.768553 | 2.221900 | 2.196900 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0339600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0007110 | SBH | 0.064043 | 0.0 | 1.469528 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0007120 | SBH | 0.039851 | 0.000000 | 2.597788 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0006860 | SBH | 0.0 | 0.0 | 4.127601 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0007300 | SBH | 0.000000 | 0.022881 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0007190 | SBH | 0.000000 | 0.000000 | 1.096546 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0176500 | RBH | 16.474223 | 29.0721035 | 31.044215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0007160 | SBH | 0.032457 | 0.053806 | 0.089806 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0187000 | RBH | 17.8029045 | 21.673901 | 23.5147285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0006920 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0006930 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0007420 | SBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0006830 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0007490 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G007140 | SBH | 0.060816 | 0.345007 | 1.011811 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0007170 | SBH | 0.101684 | 0.0 | 2.223008 |
