Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0006540 | OGI:10030920 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:9972379-9974684 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggtgccagatcaggacggtgaactccggcatgatgtgtgagccgatatgatggctaggctgtggcgacccgtagaagtttgtttttatctccctgctctatttgatgttagattccattatgtatattcagagatccaatcagtattaattagttaatgttcatgcatcggatttgttaatgcagatgttctctaagcacttcacttcggctaacagcccatgttacaagttctatcgtccatgagcaatcaagcaacatcagatatggagagaatcggaagcatgggcagagatatgcgtatcatgaggtattctcttcacttgcatgacaaacatcgtcccattaagtactaatcctaactaatttattgtaaatcatgccccttgtatagtttgcttctctggctgaagtactatagctgattccttgcttttttgtgccagatagaaaatatttccatgttccttcgcaaattataaacagcgttgaatacaggatattcccatatttctttaacaatcaatattaaatattgtattaactgtgaacctttatttgctccttctctttattatctaaatttgttctaaccattatcaccttcttatattctttccatatcttattagaccgctaaaaacactcttttatcatcttatcatataggtcgctatctttcttatattgtacatattttccctgccccaaaaATagttgatctttacatgcacccacaataatgctattcctaattttaggtctgcctccattatagaacagcaacattttattcagccactgatatacaaacaacatatgttccagcttctttatgatgactcaaacaacatctgctatgctaaggttcacacagttggatggagaagattttgtaagcgcaaacagctacttttcgcattcgcatgaacatactacgctatctgttactgatgggaaTtttttttgtagcctctcccacccgagattgttgcccgctgcaatggacacgatgggaaacatctaactttagtcacacggaatagcaaaccagtgaatgtcaggctcgaaaaaagaggccaatcattctacatctcgaaaggctggaaaaaatttgttgaacttactgacttacgtgttggacagtgtgttagatttagtgtctcttctccatcaacacttgatctcctcatacttgacaagcatggaacaagtcttgccatacctccatcaaaaagagatctgaaattaaagtcaaaaaggtctacacaccaggacagcaaaggtactctcgccacacaaacacctttcgttacaaacaatatgattatagtctcacaccaattaagtcaagagcctcatttattcattaacctataccatatcattaacgataccagctcccttactaacgtgcttcatattcctattgcaggccatccatctaacactgatccaggaccatcacgtattatcaaccgcagggtgaccaaatcaggtcaactgattacccatgccgttactttagattgcgttcctcTtttagtcctaatagaatttcaacacgtacaattagcatcacggcacgcaacaacatcatttaatcatacagcccgcatctcacatctcttcatggcctaggtacaccaccaccAaaaatatatttaacttcctatttttacactgctgcatagtgcacccataagaagtagcataagcacttttacaggccgaaccaccccgcattgccattccctgtattattgctaattggattctttcatacatactcaaaatacttatacaatacttccatgcagcaaacaacaaacccaagtttgcagatctttgcttctgtgccgagaatgttaccttatcaactgctctgaaaaggcacatgaaaacccttgcatagtgcatcgaacatccaagtaaactctatgttgtcactatgaatgaaacgttcatgAaacaagacagagtggttagctttttttacctatttatcatcgtctTAtatttagaatcatcagctaacacccaacttctggtacagtacttttcaaaaaggtaccctatagaccatctggagcagctcatgactggcagaacagaagatattgaagtgcagacattagtaggcccttcagtgaacatggttcttcacacatcaacagaccatcgttgcaacctAaaaaaaggatggacagatttcgccctcagcaatggcatcaagttgaacacagtgtgcattttccatttttacaagacaacccatctaggagtgattgtcgatatcttctga
More
|
||||||||||
| CDS seq | atggtgccagatcaggacggtgaactccggcatgatgtatgttctctaagcacttcacttcggctaacagcccatgttacaagttctatcgtccatgagcaatcaagcaacatcagatatggagagaatcggaagcatgggcagagatatgcgtatcatgagcttctttatgatgactcaaacaacatctgctatgctaagcctctcccacccgagattgttgcccgctgcaatggacacgatgggaaacatctaactttagtcacacggaatagcaaaccagtgaatgtcaggctcgaaaaaagaggccaatcattctacatctcgaaaggctggaaaaaatttgttgaacttactgacttacgtgttggacagtgtgttagatttagtgtctcttctccatcaacacttgatctcctcatacttgacaagcatggaacaagtcttgccatacctccatcaaaaagagatctgaaattaaagtcaaaaaggtctacacaccaggacagcaaaggccatccatctaacactgatccaggaccatcacgtattatcaaccgcagggtgaccaaatcagaatcatcagctaacacccaacttctggtacagtacttttcaaaaaggtaccctatagaccatctggagcagctcatgactggcagaacagaagatattgaagtgcagacattagtaggcccttcagtgaacatggttcttcacacatcaacagaccatcgttgcaacctAaaaaaaggatggacagatttcgccctcagcaatggcatcaagttgaacacagtgtgcattttccatttttacaagacaacccatctaggagtgattgtcgatatcttctga
More
|
||||||||||
| Protein seq | MVPDQDGELRHDVCSLSTSLRLTAHVTSSIVHEQSSNIRYGENRKHGQRYAYHELLYDDSNNICYAKPLPPEIVARCNGHDGKHLTLVTRNSKPVNVRLEKRGQSFYISKGWKKFVELTDLRVGQCVRFSVSSPSTLDLLILDKHGTSLAIPPSKRDLKLKSKRSTHQDSKGHPSNTDPGPSRIINRRVTKSESSANTQLLVQYFSKRYPIDHLEQLMTGRTEDIEVQTLVGPSVNMVLHTSTDHRCNLKKGWTDFALSNGIKLNTVCIFHFYKTTHLGVIVDIF |
||||||||||
| Function | B3 domain-containing protein Os10g0323000 [UniProtKB/Swiss-Prot:Q7XFU9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0006540 | OsLaMu_10g0006540.01 | Chr10 | 9972379 | 9974684 | + | NAM | ||
| CDS seq | atggtgccagatcaggacggtgaactccggcatgatgtatgttctctaagcacttcacttcggctaacagcccatgttacaagttctatcgtccatgagcaatcaagcaacatcagatatggagagaatcggaagcatgggcagagatatgcgtatcatgagcttctttatgatgactcaaacaacatctgctatgctaagcctctcccacccgagattgttgcccgctgcaatggacacgatgggaaacatctaactttagtcacacggaatagcaaaccagtgaatgtcaggctcgaaaaaagaggccaatcattctacatctcgaaaggctggaaaaaatttgttgaacttactgacttacgtgttggacagtgtgttagatttagtgtctcttctccatcaacacttgatctcctcatacttgacaagcatggaacaagtcttgccatacctccatcaaaaagagatctgaaattaaagtcaaaaaggtctacacaccaggacagcaaaggccatccatctaacactgatccaggaccatcacgtattatcaaccgcagggtgaccaaatcagaatcatcagctaacacccaacttctggtacagtacttttcaaaaaggtaccctatagaccatctggagcagctcatgactggcagaacagaagatattgaagtgcagacattagtaggcccttcagtgaacatggttcttcacacatcaacagaccatcgttgcaacctAaaaaaaggatggacagatttcgccctcagcaatggcatcaagttgaacacagtgtgcattttccatttttacaagacaacccatctaggagtgattgtcgatatcttctga
More
|
|||||||
| Protein seq | MVPDQDGELRHDVCSLSTSLRLTAHVTSSIVHEQSSNIRYGENRKHGQRYAYHELLYDDSNNICYAKPLPPEIVARCNGHDGKHLTLVTRNSKPVNVRLEKRGQSFYISKGWKKFVELTDLRVGQCVRFSVSSPSTLDLLILDKHGTSLAIPPSKRDLKLKSKRSTHQDSKGHPSNTDPGPSRIINRRVTKSESSANTQLLVQYFSKRYPIDHLEQLMTGRTEDIEVQTLVGPSVNMVLHTSTDHRCNLKKGWTDFALSNGIKLNTVCIFHFYKTTHLGVIVDIF
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.259663 | 1.856267 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0323000 | RBH | 0.881853 | 0.808424 | 0.895719 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g17630 | RBH | 0.000000 | 0.000000 | 0.281331 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0323000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0006340 | RBH | 0.125645 | 3.204067 | 2.138608 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0006220 | RBH | 0.039638 | 2.643288 | 4.011546 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0006090 | RBH | 0.276572 | 2.645360 | 5.990156 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0006510 | RBH | 0.080515 | 0.128076 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0006230 | RBH | 0.925985 | 0.000000 | 7.043329 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0155000 | RBH | 1.762764 | 4.6174405 | 3.047643 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0006390 | RBH | 0.131790 | 0.000000 | 2.148781 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0170300 | RBH | 2.4131545 | 8.1431415 | 9.2917635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0006220 | RBH | 0.130727 | 0.096589 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0006260 | RBH | 0.576926 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0006450 | RBH | 5.831019 | 31.258638 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0006130 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G006320 | RBH | 0.000000 | 0.762843 | 0.232575 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0006440 | RBH | 1.064973 | 0.000000 | 2.292341 |
