Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0004390 | OGI:10017170 | 14/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:5603570-5604098 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggctcctctctcaatagcttgtgttcctgaagcagaagtaatcgatctggagtcggttgaatgcaggagcggggcaaccatggcaaaatcgatgggccatagcagtggatttcatccaaagcaacaggttagtattcgtttatttttgtatggcaagatcaagacacgttgcctaaaattttcttgtttgcagcagggtcacaggaaaatcagtttgtcaccacagtccaaggtatgccacctgaaattgaatatatgtatgcctgtagagagggattatgtgtagttcggttcatgtacgctctcagtttcagatgctaaatttcccctttagtgtatatgatggtttttgggtggatatagtaaatgctgttttagcccccccccccccccccaaaaaaaatatagatggtagtatgtactgaattttccacggtatatactcattgtttctttggagggatacttactgaactctgttaaacgttattatgtactgaatttttctatggcagggttcttactga
More
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| CDS seq | atggctcctctctcaatagcttgtgttcctgaagcagaagtaatcgatctggagtcggttgaatgcaggagcggggcaaccatggcaaaatcgatgggccatagcagtggatttcatccaaagcaacagcagggtcacaggaaaatcagtttgtcaccacagtccaagggttcttactga |
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| Protein seq | MAPLSIACVPEAEVIDLESVECRSGATMAKSMGHSSGFHPKQQQGHRKISLSPQSKGSY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0004390 | OsLaMu_10g0004390.01 | Chr10 | 5603570 | 5604098 | + | NAM | ||
| CDS seq | atggctcctctctcaatagcttgtgttcctgaagcagaagtaatcgatctggagtcggttgaatgcaggagcggggcaaccatggcaaaatcgatgggccatagcagtggatttcatccaaagcaacagcagggtcacaggaaaatcagtttgtcaccacagtccaagggttcttactga |
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| Protein seq | MAPLSIACVPEAEVIDLESVECRSGATMAKSMGHSSGFHPKQQQGHRKISLSPQSKGSY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0307600 | SBH | 1.108489 | 0.972281 | 4.343823 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g20239 | SBH | 0.276132 | 0.232759 | 0.339365 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0307600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0006070 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005740 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0010590 | SBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0004400 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0004160 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0085900 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0004310 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0094600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0004160 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0004200 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0004310 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0004070 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0013460 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G004240 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0004290 | RBH | 0.0 | 0.0 | 0.0 |
