Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0004110 | OGI:10016150 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:5326401-5329442 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acacacacaaacacacatcattttgtttaccaaacacactgaaacacggagcaatggcggctttgctcctttggctgtcatggcttctactctccctcctctccatctacctcctcgacctcctcgcacactcacgacgctgcctcccgccgggaccccgtccgctgccgctgatcggcagcctccacctgctcggcgacctgccacaccactcgctcgccggcctcgccaagaagtacggccctctcatgtcgctccgccttggcgctgtcaccacggtggtcgcctcctcgccggaggtcgcccgcgagttcctgcagaagcacgacgccgtcttcgccacccgttcaacccccgacgccaccggtgaccacgccaggaactccgtcgcctggctgccccccgggccgcggtggcgcgagctccgcaagatcatggcgacggagctgttctccacgcgccggctcgacgcgctccacgagctccggcaagagaaggtggcggagctcgtcgaccacgtggcgcgtctggcgcgcgacggcacggcggtggacatcggccgcgtggcgttcaccacgagcctgaacctcgtcgcgcgcaccatcttctcgcacgacctgacgagcctcgacgaccacggcgcgtcgaaggagttccagcgactgatcacggacgtcatggaggcagtcggcagcccgaacctgtcggacttcttCcccgcgctcgccgccgtcgacctgcagggctggcgccggcggctgtctgggctgtttgcgcggctgcaccggctgttcgacgccgagatggaccatcgcaggctgcacggaatgaaggagaaggacggcgacttcctggaggtgctcctgaggctcgccgcgcgggacgacgacacggcgaggctcgacggcgacacgctccggtcactgttcacggtaaggacaacgattttttttatttttagaatttgaactgtatttctaaatctaaaccttttggccacgtcagcccgtctgatgtagtcaaatcactttgtcacctcatgcgccataacaacatcttgcagcgccaccgtgcctagcatggtaaaagaattcagTtttcggaaatatttccgtaaaggtctattaataaaactaaaaaataaaaaagtataaaaaaaggaaaaaaaatacaaggaaaacaaccatcgttttcagttccagtcattttcattttccgtttacaacttgtgcagtgccgggggctatgggttgattttatttttactgtgacatgcatgattggatccaaggttggaaattttggaccgaaatttccgaatttcagtcccctccgaaatgatattactttggccaaaatttttcaatttttcaatttgttcatgaattttggtcatatttgttcaaaattttggaaatttcggaccgaaatttcgggatttcggtgacctccgacacgatcggcctaaccaataaagtgaaccctgattggatctcctcgataaaaaaaccaaaaatatgttgctttcaatcgcatacaaactgctatttcgcaaaagccaaaatttcagaaatttcaaaaaaatttgatacggaactacttataacttaaacaaaatttgactgaatttaacatattttgaacaaaatcacaaaagaataaaattacgaaaattttgggggtccaaaatttcaaaaacttttaggtatgaaattaacttgtttatagtcaagtttaaactaaattgaacatttttctttgttagattttgattctgtaccatccaaacatataacttaatgaattgtgaaataatgtcaatttgagtcaatttgttgttaggtgtagccgtgtaggtatgaatataattgttacacctgggtttatagtcataagttaaaaatcaatttgagtcaatttgtgtatttcaaccatcggtgcccaggcaccatgatgccccatatggctctcgttacAaatagttactaattacgacaagatatatatatatatatatatatatattatatatatatatatatattatatatatatatatatatatatatatatatatatatatatatatatatattaaatttgtttggtgctccatggtgcccgggcaccattgttgaaattgagtgtcATatatatatatatatatatataaaacttttaaacataaaaatgtggtatgtggatgctcttccacagttattggtgtactattaatttccgttaccatttcattgtatatctttgtattgtaggacttgtttactgcaggtagtgacacaagttctagcacagtagaatgggcaatggccgaattgctacagaacccaatatcaatggctaaactatgcgatgagctaagacgagTtgttgggtcaagaagaagaattgaagaatctgaaattggtcaattgccctatttgcaagctgtcataaaagaaacatttcgactgcattcaccagctccgttattattaccacggcaagctacgaggacaatccaaataatgggttatacaatacctaaaggtactagagtgttaataaatgtgtgggccatgggtcgagacgaagatatatggccagaagcgggaaagtttatgccggagagattcctagaaaggacaattgactacaaaggtggagatttggagctcatcccatttggtgcgggacgacgaatctgccctggaatgccattagctgttaggatggtgcatgtacttcttgcatccctgttaaTtcattttaaatggagactccccgctgaggtagaaggaaatagaattgatatgacggagaagtttggtgtgactttagcaaaagccaatcatttatgtgcgatggccgcaccaacgtaagtcaatcaggctcttgtgggtaaaaagtaTtagattgcctttacaaatgggaacattccatcaggaatgcgattattggtgcaaataaatgaatagttttgtaaatttctgggtatgttatttaactgatcgaatcggataagtacaaaaattatatttgtgc
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| CDS seq | atggcggctttgctcctttggctgtcatggcttctactctccctcctctccatctacctcctcgacctcctcgcacactcacgacgctgcctcccgccgggaccccgtccgctgccgctgatcggcagcctccacctgctcggcgacctgccacaccactcgctcgccggcctcgccaagaagtacggccctctcatgtcgctccgccttggcgctgtcaccacggtggtcgcctcctcgccggaggtcgcccgcgagttcctgcagaagcacgacgccgtcttcgccacccgttcaacccccgacgccaccggtgaccacgccaggaactccgtcgcctggctgccccccgggccgcggtggcgcgagctccgcaagatcatggcgacggagctgttctccacgcgccggctcgacgcgctccacgagctccggcaagagaaggtggcggagctcgtcgaccacgtggcgcgtctggcgcgcgacggcacggcggtggacatcggccgcgtggcgttcaccacgagcctgaacctcgtcgcgcgcaccatcttctcgcacgacctgacgagcctcgacgaccacggcgcgtcgaaggagttccagcgactgatcacggacgtcatggaggcagtcggcagcccgaacctgtcggacttcttCcccgcgctcgccgccgtcgacctgcagggctggcgccggcggctgtctgggctgtttgcgcggctgcaccggctgttcgacgccgagatggaccatcgcaggctgcacggaatgaaggagaaggacggcgacttcctggaggacttgtttactgcaggtagtgacacaagttctagcacagtagaatgggcaatggccgaattgctacagaacccaatatcaatggctaaactatgcgatgagctaagacgagTtgttgggtcaagaagaagaattgaagaatctgaaattggtcaattgccctatttgcaagctgtcataaaagaaacatttcgactgcattcaccagctccgttattattaccacggcaagctacgaggacaatccaaataatgggttatacaatacctaaaggtactagagtgttaataaatgtgtgggccatgggtcgagacgaagatatatggccagaagcgggaaagtttatgccggagagattcctagaaaggacaattgactacaaaggtggagatttggagctcatcccatttggtgcgggacgacgaatctgccctggaatgccattagctgttaggatggtgcatgtacttcttgcatccctgttaaTtcattttaaatggagactccccgctgaggtagaaggaaatagaattgatatgacggagaagtttggtgtgactttagcaaaagccaatcatttatgtgcgatggccgcaccaacgtaa
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| Protein seq | MAALLLWLSWLLLSLLSIYLLDLLAHSRRCLPPGPRPLPLIGSLHLLGDLPHHSLAGLAKKYGPLMSLRLGAVTTVVASSPEVAREFLQKHDAVFATRSTPDATGDHARNSVAWLPPGPRWRELRKIMATELFSTRRLDALHELRQEKVAELVDHVARLARDGTAVDIGRVAFTTSLNLVARTIFSHDLTSLDDHGASKEFQRLITDVMEAVGSPNLSDFFPALAAVDLQGWRRRLSGLFARLHRLFDAEMDHRRLHGMKEKDGDFLEDLFTAGSDTSSSTVEWAMAELLQNPISMAKLCDELRRVVGSRRRIEESEIGQLPYLQAVIKETFRLHSPAPLLLPRQATRTIQIMGYTIPKGTRVLINVWAMGRDEDIWPEAGKFMPERFLERTIDYKGGDLELIPFGAGRRICPGMPLAVRMVHVLLASLLIHFKWRLPAEVEGNRIDMTEKFGVTLAKANHLCAMAAPT |
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| Function | Geraniol 8-hydroxylase [UniProtKB/Swiss-Prot:Q8VWZ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0004110 | OsLaMu_10g0004110.01 | Chr10 | 5326454 | 5329442 | + | NAM | ||
| CDS seq | atggcggctttgctcctttggctgtcatggcttctactctccctcctctccatctacctcctcgacctcctcgcacactcacgacgctgcctcccgccgggaccccgtccgctgccgctgatcggcagcctccacctgctcggcgacctgccacaccactcgctcgccggcctcgccaagaagtacggccctctcatgtcgctccgccttggcgctgtcaccacggtggtcgcctcctcgccggaggtcgcccgcgagttcctgcagaagcacgacgccgtcttcgccacccgttcaacccccgacgccaccggtgaccacgccaggaactccgtcgcctggctgccccccgggccgcggtggcgcgagctccgcaagatcatggcgacggagctgttctccacgcgccggctcgacgcgctccacgagctccggcaagagaaggtggcggagctcgtcgaccacgtggcgcgtctggcgcgcgacggcacggcggtggacatcggccgcgtggcgttcaccacgagcctgaacctcgtcgcgcgcaccatcttctcgcacgacctgacgagcctcgacgaccacggcgcgtcgaaggagttccagcgactgatcacggacgtcatggaggcagtcggcagcccgaacctgtcggacttcttCcccgcgctcgccgccgtcgacctgcagggctggcgccggcggctgtctgggctgtttgcgcggctgcaccggctgttcgacgccgagatggaccatcgcaggctgcacggaatgaaggagaaggacggcgacttcctggaggacttgtttactgcaggtagtgacacaagttctagcacagtagaatgggcaatggccgaattgctacagaacccaatatcaatggctaaactatgcgatgagctaagacgagTtgttgggtcaagaagaagaattgaagaatctgaaattggtcaattgccctatttgcaagctgtcataaaagaaacatttcgactgcattcaccagctccgttattattaccacggcaagctacgaggacaatccaaataatgggttatacaatacctaaaggtactagagtgttaataaatgtgtgggccatgggtcgagacgaagatatatggccagaagcgggaaagtttatgccggagagattcctagaaaggacaattgactacaaaggtggagatttggagctcatcccatttggtgcgggacgacgaatctgccctggaatgccattagctgttaggatggtgcatgtacttcttgcatccctgttaaTtcattttaaatggagactccccgctgaggtagaaggaaatagaattgatatgacggagaagtttggtgtgactttagcaaaagccaatcatttatgtgcgatggccgcaccaacgtaa
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| Protein seq | MAALLLWLSWLLLSLLSIYLLDLLAHSRRCLPPGPRPLPLIGSLHLLGDLPHHSLAGLAKKYGPLMSLRLGAVTTVVASSPEVAREFLQKHDAVFATRSTPDATGDHARNSVAWLPPGPRWRELRKIMATELFSTRRLDALHELRQEKVAELVDHVARLARDGTAVDIGRVAFTTSLNLVARTIFSHDLTSLDDHGASKEFQRLITDVMEAVGSPNLSDFFPALAAVDLQGWRRRLSGLFARLHRLFDAEMDHRRLHGMKEKDGDFLEDLFTAGSDTSSSTVEWAMAELLQNPISMAKLCDELRRVVGSRRRIEESEIGQLPYLQAVIKETFRLHSPAPLLLPRQATRTIQIMGYTIPKGTRVLINVWAMGRDEDIWPEAGKFMPERFLERTIDYKGGDLELIPFGAGRRICPGMPLAVRMVHVLLASLLIHFKWRLPAEVEGNRIDMTEKFGVTLAKANHLCAMAAPT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0004110 | OsLaMu_10g0004110.02 | Chr10 | 5326401 | 5327526 | + | IsoSeq | ||
| CDS seq | cacacacaaacacacatcattttgtttaccaaacacactgaaacacggagcaatggcggctttgctcctttggctgtcatggcttctactctccctcctctccatctacctcctcgacctcctcgcacactcacgacgctgcctcccgccgggaccccgtccgctgccgctgatcggcagcctccacctgctcggcgacctgccacaccactcgctcgccggcctcgccaagaagtacggccctctcatgtcgctccgccttggcgctgtcaccacggtggtcgcctcctcgccggaggtcgcccgcgagttcctgcagaagcacgacgccgtcttcgccacccgttcaacccccgacgccac
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| Protein seq | HTQTHIILFTKHTETRSNGGFAPLAVMASTLPPLHLPPRPPRTLTTLPPAGTPSAAADRQPPPARRPATPLARRPRQEVRPSHVAPPWRCHHGGRLLAGGRPRVPAEARRRLRHPFNPRRH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.008775 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0166600 | RBH | 1.174185 | 0.0 | 0.363851 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g08474 | RBH | 0.764564 | 0.0 | 0.090039 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0166600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0003920 | RBH | 3.745215 | 0.0 | 0.396157 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0003880 | RBH | 0.838096 | 0.479749 | 1.678581 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0003800 | RBH | 7.036914 | 0.0 | 1.164299 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0004110 | RBH | 0.538309 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0003890 | RBH | 0.000000 | 0.0 | 0.696678 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0079600 | RBH | 6.2079895 | 0.442675 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0004030 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0085700 | SBH | 0.385589 | 0 | 0.0038825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0003870 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0003910 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0004020 | RBH | 6.407923 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0003790 | RBH | 0.0 | 0.0 | 0.160313 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0010640 | SBH | 0.349981 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G003970 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0004010 | RBH | 0.0 | 0.0 | 0.0 |
