Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_10g0000710 | OGI:10004540 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr10:1467972-1471610 | ||||||||
| Gene Symbol | PPR | ||||||||||
| DNA seq | ttaccaagaaagaaaaatataaacatgcattacctgaacaatgagatggcagaacgcatgcagtgccacatattccctttgtcctgtagcaagtgaaccaaaagaccagttagataccaagtactgtgaggttggagtttcctaaaaaaaaaacattactcactgctgcatgtacaacttaacagaatgatatgataaatggaagaaaagattcagttaacaaatgtatagacaataaatataaaaggaaattagaatattactcataaatcaaacatcgtaagcaaataatacaaggaaatcctacactcatgaacgcatgattcacgacacagagtttttggatgagaactctgtcttcacttcagttttaacaatgaaactcaagcttgcattgcaatgtgccccaaggtgctggatgtacagaaaacaactatgagaaatacagcatcacacgcatacttaggacatgtcttacagactttttgttttttgcttagtgattaactgctaaatatacagaatgatatagtccataaactaatacttaagtacatagaacagggcaggctggagcagtggagagttaatgctgactctatataatggatcagagcagatgtgctcgaccctaaataaatgttacctgaagcatcctgagttctgtctttgtgatctcccaccaatttataaacacctgcatggctgcatagtgccattttgttagcatctgctcacagctttcctccaatacctagctcaggcttctcgccttcctgaaaccttgaagaactccaagtagctttggtaatcgctttggcatttgatgccttctgtagcatacatccattatcctactgcatatagaggcacactaccctccatttcaaaagccaaatcaagttccccctgtttatagcatagctcctctaaacatttctttgtttttttatcaagatacttccttttcttcagcatcattgtaaaaatcctgtcagcctcactccatcgtccatcttttgcaagtaccaatagcaaagaagtgtagttggcatatcgtggagtataaccctggaaaagcatatcttcaaataactgtaggacaatatcaattgcattttcagcaagaagaagctccattagtttgtcataggaagccttactaggaacaaagcctcttttgtgcatcatcaataaaaacgaaagtgcttctttcattcgtccagcaagagaaagccccttaataaaagtgttgtatgttatcttatcaaagacacatccgtcactgttcaacgagttaaatagttggatagcatggttgatgtctcctaatcttatttgattattcatgagtatagtatacgtcacatgattgggaagaataccagtttggtccatcacagataagaggctgtaagcatcatccatcttattggctctacaaaggccattaatcatcccattgtaaatatgtaaatcaggcaccataccattttcttcaagatcctgaattataccctgagcaacctgaatcatttcctctgtacatatctgattgtccttctgttttccatttcttgtatcaatgatttgaggcagcattctaaataacatataccttgcttccttcagTtttttatccagagacggtctcatgcctcggcgagctatatttcggcaaatgccagcgactaaagcaccataggtgatgagatcaggtgcaacattggttttcatcatcaaaacaacaagatctaaacctaatcttacatctcctttcctaaaaaactgatttataagcattgtatagatgactgtttgtggtgcgatgccctcctccagcatcctttccaaataaccaagagcctttctgattttgtttccctttaccaggccatttataagtgaaccataagcatggggaccaggttgcaaacctctctttagcatttcatcgaaaatacggcacacattccttgtttgcctcgtcaaggaatatccattaataagtgatgtgtaaataatctcatctggtgctaatccttctcgaatcatttggcggagtgtagcctccgcttctttaaggcgcctcattctacacaagcacactataatagaatcatatactgcaatagaaggctctatcccatccttggccatttcaccaaacagatgaagtgcactttctatttcaccaatcttacagtatgctgttaccatgattgaatttgtggacatatcaggtctgacacccctgctatgcataatagtaatgagtgccctagcatcatccatacgattttgctcacagaggcattttatcacgatattgtatgttaagacagagggctcacagccataagccaccagcttccccagtagatagtaggacacatctagcctcccctccgagcacatggcaattatcatcaaattgagaacgatattaacagggagcacattgcttgtcactatttcatcgagaagatggtcagcctccttctgtaaactcatgttcgagcacccaccggcaagcgaagaaagctccagcagcttggcgccacaatccaacttggcaacagccttcaatgctttccgcacaaataaaaccacccagcctttggggaagaacctcgctatcgaaataaacataacatggtcagggaaaaggccactctccagcatcttatcaaacagattctcggcctcacccaacttcccatccttgcagagcgatgccatcagaatagtgtagcacctcaagtcaggtgcaacacccatccttatcatcaccttgtagatatccatggcagcaccaacccacttgctcttacaataccacctgatcatcacattgtaggttgctgcgtcaggctgaatgcccctgtcaatcatctcatggtacatctggaggccatgatcgacacgcccatgctcaaacaatccccatatcatcgtcgtgtaagcgtacgcatccaactgaacatgctcatcccccttcatcctacggaacacatccagcgcaggctccagccgcccctcccggcaaaacacccggatgagcgccgtgctgagctccctatcgagatacatccctttgatgagcatcagctggcacatgtcgctggcatcgagggagcgcctggccttgcagtatgcgaaggcaagcgacctgtagacgcggacggggggtgtgagcccggagcgaagcattgcgtcgaacaggaagcgggccttgtcgacggccccctcagagcacaggcccgggatgaggagcgcgaagtccgagacgggcaacggcgaggggttgcccatcgagagcacgagaacgtccatggcctctgtggacatggaggcggagcacatggcgcggaggagcgcggcggtggaggcgggcgagggggcggcgcccgactggacgaggcggtggaagtgggagagcgcggaggagatgtcaccgaggcgggagtggcaggcgacgagcgcgtcggagacggcggggtcgggggcgtcggcgagggcgaggcgggaggcgacggcgcgcgcctcccggaggcggccgcggcggagcaggcgggtgaggaggtcggcgcagtgcgaggcgtgggaggtggaggccgccgccacgcgggagcacat
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| CDS seq | atgtgctcccgcgtggcggcggcctccacctcccacgcctcgcactgcgccgacctcctcacccgcctgctccgccgcggccgcctccgggaggcgcgcgccgtcgcctcccgcctcgccctcgccgacgcccccgaccccgccgtctccgacgcgctcgtcgcctgccactcccgcctcggtgacatctcctccgcgctctcccacttccaccgcctcgtccagtcgggcgccgccccctcgcccgcctccaccgccgcgctcctccgcgccatgtgctccgcctccatgtccacagaggccatggacgttctcgtgctctcgatgggcaacccctcgccgttgcccgtctcggacttcgcgctcctcatcccgggcctgtgctctgagggggccgtcgacaaggcccgcttcctgttcgacgcaatgcttcgctccgggctcacaccccccgtccgcgtctacaggtcgcttgccttcgcatactgcaaggccaggcgctccctcgatgccagcgacatgtgccagctgatgctcatcaaagggatgtatctcgatagggagctcagcacggcgctcatccgggtgttttgccgggaggggcggctggagcctgcgctggatgtgttccgtaggatgaagggggatgagcatgttcagttggatgcgtacgcttacacgacgatgatatggggattgtttgagcatgggcgtgtcgatcatggcctccagatgtaccatgagatgattgacaggggcattcagcctgacgcagcaacctacaatgtgatgatcaggtggtattgtaagagcaagtgggttggtgctgccatggatatctacaaggtgatgataaggatgggtgttgcacctgacttgaggtgctacactattctgatggcatcgctctgcaaggatgggaagttgggtgaggccgagaatctgtttgataagatgctggagagtggccttttccctgaccatgttatgtttatttcgatagcgaggttcttccccaaaggctgggtggttttatttgtgcggaaagcattgaaggctgttgccaagttggattgtggcgccaagctgctggagctttcttcgcttgccggtgggtgctcgaacatgagtttacagaaggaggctgaccatcttctcgatgaaatagtgacaagcaatgtgctccctgttaatatcgttctcaatttgatgataattgccatgtgctcggaggggaggctagatgtgtcctactatctactggggaagctggtggcttatggctgtgagccctctgtcttaacatacaatatcgtgataaaatgcctctgtgagcaaaatcgtatggatgatgctagggcactcattactattatgcatagcaggggtgtcagacctgatatgtccacaaattcaatcatggtaacagcatactgtaagattggtgaaatagaaagtgcacttcatctgtttggtgaaatggccaaggatgggatagagccttctattgcagtatatgattctattatagtgtgcttgtgtagaatgaggcgccttaaagaagcggaggctacactccgccaaatgattcgagaaggattagcaccagatgagattatttacacatcacttattaatggatattccttgacgaggcaaacaaggaatgtgtgccgtattttcgatgaaatgctaaagagaggtttgcaacctggtccccatgcttatggttcacttataaatggcctggtaaagggaaacaaaatcagaaaggctcttggttatttggaaaggatgctggaggagggcatcgcaccacaaacagtcatctatacaatgcttataaatcagttttttaggaaaggagatgtaagattaggtttagatcttgttgttttgatgatgaaaaccaatgttgcacctgatctcatcacctatggtgctttagtcgctggcatttgccgaaatatagctcgccgaggcatgagaccgtctctggataaaaaActgaaggaagcaaggtatatgttatttagaatgctgcctcaaatcattgatacaagaaatggaaaacagaaggacaatcagatatgtacagaggaaatgattcaggttgctcagggtataattcaggatcttgaagaaaatggtatggtgcctgatttacatatttacaatgggatgattaatggcctttgtagagccaataagatggatgatgcttacagcctcttatctgtgatggaccaaactggtattcttcccaatcatgtgacgtatactatactcatgaataatcaaataagattaggagacatcaaccatgctatccaactatttaactcgttgaacagtgacggatgtgtctttgataagataacatacaacacttttattaaggggctttctcttgctggacgaatgaaagaagcactttcgtttttattgatgatgcacaaaagaggctttgttcctagtaaggcttcctatgacaaactaatggagcttcttcttgctgaaaatgcaattgatattgtcctacagttatttgaagatatgcttttccagggttatactccacgatatgccaactacacttctttgctattggtacttgcaaaagatggacgatggagtgaggctgacaggatttttacaatgatgctgaagaaaaggaagtatcttgataaaaaaacaaagaaatgtttagaggagctatgctataaacagggggaacttgatttggcttttgaaatggagggtagtgtgtttataaattggtgggagatcacaaagacagaactcaggatgcttcaggaaactccaacctcacagtacttggtatctaactggtcttttggttcacttgctacaggacaaagggaatatgtggcactgcatgcgttctgccatctcattgttcaggtaatgcatgtttatatttttctttcttggtaa
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| Protein seq | MCSRVAAASTSHASHCADLLTRLLRRGRLREARAVASRLALADAPDPAVSDALVACHSRLGDISSALSHFHRLVQSGAAPSPASTAALLRAMCSASMSTEAMDVLVLSMGNPSPLPVSDFALLIPGLCSEGAVDKARFLFDAMLRSGLTPPVRVYRSLAFAYCKARRSLDASDMCQLMLIKGMYLDRELSTALIRVFCREGRLEPALDVFRRMKGDEHVQLDAYAYTTMIWGLFEHGRVDHGLQMYHEMIDRGIQPDAATYNVMIRWYCKSKWVGAAMDIYKVMIRMGVAPDLRCYTILMASLCKDGKLGEAENLFDKMLESGLFPDHVMFISIARFFPKGWVVLFVRKALKAVAKLDCGAKLLELSSLAGGCSNMSLQKEADHLLDEIVTSNVLPVNIVLNLMIIAMCSEGRLDVSYYLLGKLVAYGCEPSVLTYNIVIKCLCEQNRMDDARALITIMHSRGVRPDMSTNSIMVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSIIVCLCRMRRLKEAEATLRQMIREGLAPDEIIYTSLINGYSLTRQTRNVCRIFDEMLKRGLQPGPHAYGSLINGLVKGNKIRKALGYLERMLEEGIAPQTVIYTMLINQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGALVAGICRNIARRGMRPSLDKKLKEARYMLFRMLPQIIDTRNGKQKDNQICTEEMIQVAQGIIQDLEENGMVPDLHIYNGMINGLCRANKMDDAYSLLSVMDQTGILPNHVTYTILMNNQIRLGDINHAIQLFNSLNSDGCVFDKITYNTFIKGLSLAGRMKEALSFLLMMHKRGFVPSKASYDKLMELLLAENAIDIVLQLFEDMLFQGYTPRYANYTSLLLVLAKDGRWSEADRIFTMMLKKRKYLDKKTKKCLEELCYKQGELDLAFEMEGSVFINWWEITKTELRMLQETPTSQYLVSNWSFGSLATGQREYVALHAFCHLIVQVMHVYIFLSW |
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| Function | Pentatricopeptide repeat-containing protein At5g62370 [UniProtKB/Swiss-Prot:Q9LVA2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_10g0000710 | OsLaMu_10g0000710.01 | Chr10 | 1467972 | 1471610 | - | NAM | ||
| CDS seq | atgtgctcccgcgtggcggcggcctccacctcccacgcctcgcactgcgccgacctcctcacccgcctgctccgccgcggccgcctccgggaggcgcgcgccgtcgcctcccgcctcgccctcgccgacgcccccgaccccgccgtctccgacgcgctcgtcgcctgccactcccgcctcggtgacatctcctccgcgctctcccacttccaccgcctcgtccagtcgggcgccgccccctcgcccgcctccaccgccgcgctcctccgcgccatgtgctccgcctccatgtccacagaggccatggacgttctcgtgctctcgatgggcaacccctcgccgttgcccgtctcggacttcgcgctcctcatcccgggcctgtgctctgagggggccgtcgacaaggcccgcttcctgttcgacgcaatgcttcgctccgggctcacaccccccgtccgcgtctacaggtcgcttgccttcgcatactgcaaggccaggcgctccctcgatgccagcgacatgtgccagctgatgctcatcaaagggatgtatctcgatagggagctcagcacggcgctcatccgggtgttttgccgggaggggcggctggagcctgcgctggatgtgttccgtaggatgaagggggatgagcatgttcagttggatgcgtacgcttacacgacgatgatatggggattgtttgagcatgggcgtgtcgatcatggcctccagatgtaccatgagatgattgacaggggcattcagcctgacgcagcaacctacaatgtgatgatcaggtggtattgtaagagcaagtgggttggtgctgccatggatatctacaaggtgatgataaggatgggtgttgcacctgacttgaggtgctacactattctgatggcatcgctctgcaaggatgggaagttgggtgaggccgagaatctgtttgataagatgctggagagtggccttttccctgaccatgttatgtttatttcgatagcgaggttcttccccaaaggctgggtggttttatttgtgcggaaagcattgaaggctgttgccaagttggattgtggcgccaagctgctggagctttcttcgcttgccggtgggtgctcgaacatgagtttacagaaggaggctgaccatcttctcgatgaaatagtgacaagcaatgtgctccctgttaatatcgttctcaatttgatgataattgccatgtgctcggaggggaggctagatgtgtcctactatctactggggaagctggtggcttatggctgtgagccctctgtcttaacatacaatatcgtgataaaatgcctctgtgagcaaaatcgtatggatgatgctagggcactcattactattatgcatagcaggggtgtcagacctgatatgtccacaaattcaatcatggtaacagcatactgtaagattggtgaaatagaaagtgcacttcatctgtttggtgaaatggccaaggatgggatagagccttctattgcagtatatgattctattatagtgtgcttgtgtagaatgaggcgccttaaagaagcggaggctacactccgccaaatgattcgagaaggattagcaccagatgagattatttacacatcacttattaatggatattccttgacgaggcaaacaaggaatgtgtgccgtattttcgatgaaatgctaaagagaggtttgcaacctggtccccatgcttatggttcacttataaatggcctggtaaagggaaacaaaatcagaaaggctcttggttatttggaaaggatgctggaggagggcatcgcaccacaaacagtcatctatacaatgcttataaatcagttttttaggaaaggagatgtaagattaggtttagatcttgttgttttgatgatgaaaaccaatgttgcacctgatctcatcacctatggtgctttagtcgctggcatttgccgaaatatagctcgccgaggcatgagaccgtctctggataaaaaActgaaggaagcaaggtatatgttatttagaatgctgcctcaaatcattgatacaagaaatggaaaacagaaggacaatcagatatgtacagaggaaatgattcaggttgctcagggtataattcaggatcttgaagaaaatggtatggtgcctgatttacatatttacaatgggatgattaatggcctttgtagagccaataagatggatgatgcttacagcctcttatctgtgatggaccaaactggtattcttcccaatcatgtgacgtatactatactcatgaataatcaaataagattaggagacatcaaccatgctatccaactatttaactcgttgaacagtgacggatgtgtctttgataagataacatacaacacttttattaaggggctttctcttgctggacgaatgaaagaagcactttcgtttttattgatgatgcacaaaagaggctttgttcctagtaaggcttcctatgacaaactaatggagcttcttcttgctgaaaatgcaattgatattgtcctacagttatttgaagatatgcttttccagggttatactccacgatatgccaactacacttctttgctattggtacttgcaaaagatggacgatggagtgaggctgacaggatttttacaatgatgctgaagaaaaggaagtatcttgataaaaaaacaaagaaatgtttagaggagctatgctataaacagggggaacttgatttggcttttgaaatggagggtagtgtgtttataaattggtgggagatcacaaagacagaactcaggatgcttcaggaaactccaacctcacagtacttggtatctaactggtcttttggttcacttgctacaggacaaagggaatatgtggcactgcatgcgttctgccatctcattgttcaggtaatgcatgtttatatttttctttcttggtaa
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| Protein seq | MCSRVAAASTSHASHCADLLTRLLRRGRLREARAVASRLALADAPDPAVSDALVACHSRLGDISSALSHFHRLVQSGAAPSPASTAALLRAMCSASMSTEAMDVLVLSMGNPSPLPVSDFALLIPGLCSEGAVDKARFLFDAMLRSGLTPPVRVYRSLAFAYCKARRSLDASDMCQLMLIKGMYLDRELSTALIRVFCREGRLEPALDVFRRMKGDEHVQLDAYAYTTMIWGLFEHGRVDHGLQMYHEMIDRGIQPDAATYNVMIRWYCKSKWVGAAMDIYKVMIRMGVAPDLRCYTILMASLCKDGKLGEAENLFDKMLESGLFPDHVMFISIARFFPKGWVVLFVRKALKAVAKLDCGAKLLELSSLAGGCSNMSLQKEADHLLDEIVTSNVLPVNIVLNLMIIAMCSEGRLDVSYYLLGKLVAYGCEPSVLTYNIVIKCLCEQNRMDDARALITIMHSRGVRPDMSTNSIMVTAYCKIGEIESALHLFGEMAKDGIEPSIAVYDSIIVCLCRMRRLKEAEATLRQMIREGLAPDEIIYTSLINGYSLTRQTRNVCRIFDEMLKRGLQPGPHAYGSLINGLVKGNKIRKALGYLERMLEEGIAPQTVIYTMLINQFFRKGDVRLGLDLVVLMMKTNVAPDLITYGALVAGICRNIARRGMRPSLDKKLKEARYMLFRMLPQIIDTRNGKQKDNQICTEEMIQVAQGIIQDLEENGMVPDLHIYNGMINGLCRANKMDDAYSLLSVMDQTGILPNHVTYTILMNNQIRLGDINHAIQLFNSLNSDGCVFDKITYNTFIKGLSLAGRMKEALSFLLMMHKRGFVPSKASYDKLMELLLAENAIDIVLQLFEDMLFQGYTPRYANYTSLLLVLAKDGRWSEADRIFTMMLKKRKYLDKKTKKCLEELCYKQGELDLAFEMEGSVFINWWEITKTELRMLQETPTSQYLVSNWSFGSLATGQREYVALHAFCHLIVQVMHVYIFLSW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.112840 | 2.254750 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0116000 | RBH | 0.512001 | 1.334813 | 1.283261 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g02650 | RBH | 0.338953 | 0.878872 | 0.323382 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0116000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0000760 | RBH | 0.321122 | 0.280461 | 2.463518 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0000760 | RBH | 0.0 | 0.0 | 0.761377 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0000760 | RBH | 1.054639 | 0.396896 | 2.314021 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0000700 | RBH | 0.108489 | 0.079879 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0000710 | RBH | 3.776533 | 1.219915 | 5.067459 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0020000 | RBH | 1.908087 | 6.8730145 | 4.1224205 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0000740 | RBH | 0.114268 | 0.000000 | 0.333182 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0022300 | RBH | 1.5855415 | 7.1038195 | 7.0391635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0000720 | RBH | 0.056014 | 0.041078 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0000770 | RBH | 0.168656 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0000720 | RBH | 1.409109 | 5.897444 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0000720 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0009760 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G000720 | RBH | 0.277928 | 0.634757 | 0.685824 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0000640 | RBH | 0.321330 | 4.009179 | 2.106131 |
