Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_09g0019770 | OGI:09065260 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr09:23713482-23717944 | ||||||||
| Gene Symbol | SIP1, OsSIP1, OsSUF4, SUF4 | ||||||||||
| DNA seq | tgtttagcatcaataccaataaattattattagtaggctctcgttccatcataataatgaatacacatcatgtttctgaaactgattctgctaattcatgatgagatatccagagttgacaacaaatcacattttcttcaggcgacaatgggaaaatgggttctagactaacatcttcactcgggtggaaagatacattcaaagctttccaagtcagaacaacatattcctttgactgcacacagtacctccagtcactagctaaataaatggagaacaggaatcggggaatcaccgactgtaggcgctactcctatgctcgcccagatgggcgaatatgtcagtgaattgcataggggcaatttacgagacatgtgctcagtttgttttacagggccatgcgtccagcaagccgactttctgatattcttcgatcaatcgctgcatcaactgagttcatctgttcacgcattgtgggagaagagagacagtgttagatatgatcagcatgattaagaacaacaaaaatgagcagttaatctcttctctttgaacataagtaccaggctcacgggccaaaatgaaagctgacctggaaccaaattcttggcacaatctcgaccaaaattaagttacaataaatgttacggtattggcagaagctcagccacctagttcttgttacaaacccatatttgcatgtggtgaatcgtaatcaataaaataatgatgctcaattgaaattaatacatacatatttgcgaactgtccagggcttggccgataaccctcaagtcaattagcaccatgagatttgtcagattgtaaaaaattactagcaggtagaacaatgtaaatacctacttggaactcctgacgtgcacgacatcagcaagatatatacgatcaaacaaataatcaccaaggatatgccatgaaaatgcaaggtagaatatgataggaaacatctcacagtgtgcaactaccagtggataatatttcctattcccacacattagataacttgatatctaatgttcaggaaaagcctaaatttgacaaacttaacatcccacttatcaaagttcacaataagtatgttcttagtgcagtatccctaacattcaacacatatacgactggatttgtgccttctacctaatgagaataacatagtgaagtatcaaagatgcgcaagattcctttgttagttgatcggcagcgcgcaaagtacagattttgaaggtggaaagcatatgatgcatttgtcatcagtagacaagagatgccagaaaacatagggaaatagcaagggaagtactggatataaactctcaatgtgatttagagaaagatggttgaaggtagaggatcgtcttaacttccatgtcacgctaatgggctcagaagaattacttataataccaaatactgaggttataaattgcatcgtgtcaaatttctctacatgtgtcgacatgaacttgacccatcatgctggtgcaaaagcaagctgatatgctgtatttactctttatgcacaagcaagcaaagcacagtgaatggtcttcaaatgttattgaatgcaatactaaggtaatacaggaccaattgtaacagaaacaaaacgaaatttctgaggcacaaactaaagggatggaaacccagttttagaacacaaggcgtatcatgcaattcacaagtgcctaaaagtttttactttactctataccctagaatgaacacttacacaatattccagttcagagcatccccatgaacttcaaacatgTtttttttttcacatatcattaatattacagatataaaattataaaaatcaaaacttacctggctagtttcatcatgcacctgatacttgggtagcgacaatcttctttcctcctacacaagtcaacaaatatttgagataaccatcaaactcatatctagtaatgtaacatgtataccaaatgatctctaatgagaataagaactaaagagaggatggaaaatataccattgacattgcttcatcatcccacaccagatagacttcatttgcaccaggttgggtggctggtgctttattattagaagcgggtggaggtacagccgctggacctcctgtacctggaacagatgcatgcaaaaggaattgatgaaggaacaaaagaacaaacataaaggacatacataacaaaagaataagcataaacgacatcatctataaatgccatatcaaccactgttgagttttatatattTTAtatatatataaaaagggcaacatacagtgcattctccagaattaagtatttcttttcaatatcagagcaaatgctgttggtattcctcttaataggaaacaggatcataacaacatgacttgatttgtctaaatcctcttaaatttcctctacagaaattgccatcacaaataataaaaatctagtgtctcaatttgcttatatagaagggtcataagttgaaaggaaaatcagctcttaccttggttagtagctgcgtatcctactcctgcaggagcaactgatggagagcttgttgggatgcttccaggtgcaacagatgctacatatggagaacttactgcaccgtttccagcagatgtactgacaggaaagagaggttgtgacacctgaggggtaacaggtgaaggtactccaacatgggccatagggaacgaagtctgaagtaaatttgtaggtgctgatgtcataggagcaggcatgttttgaattggaaatagtggctgttgtggtgcaagcccagaagccatttgaggaactgaaactactggttgtgtaaaccaaggttgcggaggtggagtaggccagattggaggtctggccatcaatggattcagtgcagggttatacctacaaacaaatgtgaaaattattttaaaaaatgttacaaaataagtatacagaatatgagcctgcaatcattggatgagtatgaacatttcgagtatactgaagaaaaaaagataacatacataggtggagctacaccataggccggtcgtggaggatataccatgcccgctggattgggcataacaggaggccttagcgatggcacttccactttggctaccttcgatgaagggtcttcctctgcatttagaacatgcactaaataaagttaacaacaagttcttatgggaaaatatatggctggttaaactcactggaatatttaattcctacacatgaataatttatctgcaaatatgaaatttctctcttgcttagatttgtcatgctgtttggacgacaggactataatttctaccacaatttgtcaccaccaagatgccaacccaacaagtggcacaaaaatgaatagttctgcattaaatcttttcagctaaatcaccctagtccagtaactatagcctagtctccacaaataaataaataaataaataattgcatgtgtatcgcggtgttttaatagcagtaccttctccatagtgggcggccaacacatctggaggaatcccttgcatcccaaagatctcaatctctgttgattccctctcaggctttgcattgggaaccctgtggtgaaaatagttatatatatgcatgtaagcaacatggtagacattatatctgcaaatacggcagttgtatcatttatttctcgctcagttattgcctagctgaggtgaataactagacaaggcctgacggcctagaggaagtaaagtgaatgcatcaaacgatagcatcttacaaaaaggaaaaactcaagcaaggcatcttatttcaaaagAaaaaaaaaagaaagaaattgcaatataaaatctagcttatggtcaggatgatccagcccaaattctcaaccccaaatacggcgattaagaaacgcgcagcattgtattcgatctactacggcactagaacaaatcgatctaatcaatcgcgaaaagcgtcatgattgggagagaacagcagtacgccatccaaaaatctagctggccgaatccgcggctacgggattgaaccggatgcagatcgaggggaggggagtgggggggggggggacgtacttggtgacggactccttgtggacctggaggacgtggatggccatgccgccggcggtggagagcttcttgtggcagacgtggcacttgaagtgcttggccttctggtgctgcacgaggatcttctcgtcgtcgaactcgcggtcgcagtagtaacagaacaccttctccacgcgcttcttcttcttccccatcacgcgcggttccccctcgtccccctccccctcctctctcgcgggcggtcgacgattctagggttagggtttcggcgaggcgagggcacgagcgcggcggggggaagacgaagacgaaggcgaggcggctctctcctttggtgtcggatcgggaggctggcgtgtggggttcaatggatttttgtgtc
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| CDS seq | atggggaagaagaagaagcgcgtggagaaggtgttctgttactactgcgaccgcgagttcgacgacgagaagatcctcgtgcagcaccagaaggccaagcacttcaagtgccacgtctgccacaagaagctctccaccgccggcggcatggccatccacgtcctccaggtccacaaggagtccgtcaccaaggttcccaatgcaaagcctgagagggaatcaacagagattgagatctttgggatgcaagggattcctccagatgtgttggccgcccactatggagaagaggaagacccttcatcgaaggtagccaaagtggaagtgccatcgctaaggcctcctgttatgcccaatccagcgggcatggtatatcctccacgaccggcctatggtgtagctccacctatgtataaccctgcactgaatccattgatggccagacctccaatctggcctactccacctccgcaaccttggtttacacaaccagtagtttcagttcctcaaatggcttctgggcttgcaccacaacagccactatttccaattcaaaacatgcctgctcctatgacatcagcacctacaaatttacttcagacttcgttccctatggcccatgttggagtaccttcacctgttacccctcaggtgtcacaacctctctttcctgtcagtacatctgctggaaacggtgcagtaagttctccatatgtagcatctgttgcacctggaagcatcccaacaagctctccatcagttgctcctgcaggagtaggatacgcagctactaaccaaggtacaggaggtccagcggctgtacctccacccgcttctaataataaagcaccagccacccaacctggtgcaaatgaagtctatctggtgtgggatgatgaagcaatgtcaatggaggaaagaagattgtcgctacccaagtatcaggtgcatgatgaaactagccaggtaagttttgatttttataattttatatctgtaatattaatgatatgtgaaaaaaaaaAcatgtttgaagttcatggggatgctctgaactggaatattgtgtaa
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| Protein seq | MGKKKKRVEKVFCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPERESTEIEIFGMQGIPPDVLAAHYGEEEDPSSKVAKVEVPSLRPPVMPNPAGMVYPPRPAYGVAPPMYNPALNPLMARPPIWPTPPPQPWFTQPVVSVPQMASGLAPQQPLFPIQNMPAPMTSAPTNLLQTSFPMAHVGVPSPVTPQVSQPLFPVSTSAGNGAVSSPYVASVAPGSIPTSSPSVAPAGVGYAATNQGTGGPAAVPPPASNNKAPATQPGANEVYLVWDDEAMSMEERRLSLPKYQVHDETSQVSFDFYNFISVILMICEKKNMFEVHGDALNWNIV |
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| Function | Protein SUPPRESSOR OF FRI 4 [UniProtKB/Swiss-Prot:Q9C5G0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_09g0019770 | OsLaMu_09g0019770.01 | Chr09 | 23713482 | 23717944 | - | NAM | ||
| CDS seq | atggggaagaagaagaagcgcgtggagaaggtgttctgttactactgcgaccgcgagttcgacgacgagaagatcctcgtgcagcaccagaaggccaagcacttcaagtgccacgtctgccacaagaagctctccaccgccggcggcatggccatccacgtcctccaggtccacaaggagtccgtcaccaaggttcccaatgcaaagcctgagagggaatcaacagagattgagatctttgggatgcaagggattcctccagatgtgttggccgcccactatggagaagaggaagacccttcatcgaaggtagccaaagtggaagtgccatcgctaaggcctcctgttatgcccaatccagcgggcatggtatatcctccacgaccggcctatggtgtagctccacctatgtataaccctgcactgaatccattgatggccagacctccaatctggcctactccacctccgcaaccttggtttacacaaccagtagtttcagttcctcaaatggcttctgggcttgcaccacaacagccactatttccaattcaaaacatgcctgctcctatgacatcagcacctacaaatttacttcagacttcgttccctatggcccatgttggagtaccttcacctgttacccctcaggtgtcacaacctctctttcctgtcagtacatctgctggaaacggtgcagtaagttctccatatgtagcatctgttgcacctggaagcatcccaacaagctctccatcagttgctcctgcaggagtaggatacgcagctactaaccaaggtacaggaggtccagcggctgtacctccacccgcttctaataataaagcaccagccacccaacctggtgcaaatgaagtctatctggtgtgggatgatgaagcaatgtcaatggaggaaagaagattgtcgctacccaagtatcaggtgcatgatgaaactagccagatgaactcagttgatgcagcgattgatcgaagaatatcagaaagtcggcttgctggacgcatggccctgtaa
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| Protein seq | MGKKKKRVEKVFCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPERESTEIEIFGMQGIPPDVLAAHYGEEEDPSSKVAKVEVPSLRPPVMPNPAGMVYPPRPAYGVAPPMYNPALNPLMARPPIWPTPPPQPWFTQPVVSVPQMASGLAPQQPLFPIQNMPAPMTSAPTNLLQTSFPMAHVGVPSPVTPQVSQPLFPVSTSAGNGAVSSPYVASVAPGSIPTSSPSVAPAGVGYAATNQGTGGPAAVPPPASNNKAPATQPGANEVYLVWDDEAMSMEERRLSLPKYQVHDETSQMNSVDAAIDRRISESRLAGRMAL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_09g0019770 | OsLaMu_09g0019770.02 | Chr09 | 23713482 | 23717944 | - | NAM | ||
| CDS seq | atggggaagaagaagaagcgcgtggagaaggtgttctgttactactgcgaccgcgagttcgacgacgagaagatcctcgtgcagcaccagaaggccaagcacttcaagtgccacgtctgccacaagaagctctccaccgccggcggcatggccatccacgtcctccaggtccacaaggagtccgtcaccaaggttcccaatgcaaagcctgagagggaatcaacagagattgagatctttgggatgcaagggattcctccagatgtgttggccgcccactatggagaagaggaagacccttcatcgaaggtagccaaagtggaagtgccatcgctaaggcctcctgttatgcccaatccagcgggcatggtatatcctccacgaccggcctatggtgtagctccacctatgtataaccctgcactgaatccattgatggccagacctccaatctggcctactccacctccgcaaccttggtttacacaaccagtagtttcagttcctcaaatggcttctgggcttgcaccacaacagccactatttccaattcaaaacatgcctgctcctatgacatcagcacctacaaatttacttcagacttcgttccctatggcccatgttggagtaccttcacctgttacccctcaggtgtcacaacctctctttcctgtcagtacatctgctggaaacggtgcagtaagttctccatatgtagcatctgttgcacctggaagcatcccaacaagctctccatcagttgctcctgcaggagtaggatacgcagctactaaccaaggtacaggaggtccagcggctgtacctccacccgcttctaataataaagcaccagccacccaacctggtgcaaatgaagtctatctggtgtgggatgatgaagcaatgtcaatggaggaaagaagattgtcgctacccaagtatcaggtgcatgatgaaactagccaggtaagttttgatttttataattttatatctgtaatattaatgatatgtgaaaaaaaaaAcatgtttgaagttcatggggatgctctgaactggaatattgtgtaa
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| Protein seq | MGKKKKRVEKVFCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVTKVPNAKPERESTEIEIFGMQGIPPDVLAAHYGEEEDPSSKVAKVEVPSLRPPVMPNPAGMVYPPRPAYGVAPPMYNPALNPLMARPPIWPTPPPQPWFTQPVVSVPQMASGLAPQQPLFPIQNMPAPMTSAPTNLLQTSFPMAHVGVPSPVTPQVSQPLFPVSTSAGNGAVSSPYVASVAPGSIPTSSPSVAPAGVGYAATNQGTGGPAAVPPPASNNKAPATQPGANEVYLVWDDEAMSMEERRLSLPKYQVHDETSQVSFDFYNFISVILMICEKKNMFEVHGDALNWNIV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr09 | 23713941 | 23715333 | - | OsLaMu_09g0019770.02 | OsLaMu_09g0019770.01,OsLaMu_09g0019770.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.615842 | 5.294823 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0560900 | RBH | 4.422460 | 2.533835 | 7.718283 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g38790 | RBH | 2.981483 | 1.689019 | 2.286894 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0560900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0019670 | RBH | 1.321592 | 17.129530 | 15.241889 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0019760 | RBH | 0.706420 | 4.730612 | 6.898539 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0019970 | RBH | 1.642934 | 7.954203 | 21.241554 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0019750 | RBH | 0.406365 | 0.366237 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0019960 | RBH | 11.618827 | 9.769266 | 32.123432 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0378000 | RBH | 11.127128 | 26.2667485 | 33.837591 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0019750 | RBH | 0.868543 | 1.452223 | 3.105592 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0364500 | RBH | 5.6590915 | 13.5377775 | 13.106087 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0019870 | RBH | 0.783047 | 0.510980 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0019600 | RBH | 1.109398 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0019610 | RBH | 8.972963 | 32.433949 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0019640 | RBH | 1.387131 | 0.0 | 1.943641 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G020140 | RBH | 1.207431 | 6.483648 | 4.762749 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0019920 | RBH | 2.188928 | 22.151260 | 10.231097 |
