Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_09g0010120 | OGI:09043850 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr09:15660780-15662744 | ||||||||
| Gene Symbol | OsZHD9 | ||||||||||
| DNA seq | aagcgaaagtacaagcaagtcaattgattaatgaaagaacagtagtaaaaATtataataataataataataacactaattaagtgagcagagtgcaagaggtgaggctgcttccatttttgtatacattttttctcaaagagaagagagatcctagaattctagaaggaagaaccctctcctcctacctctgcttcgaagggaggacaagaacagccaagagaggtgccacttttgagatgagataatctaattaaaatccctaattctccatcatcatcggatcccaagaacatacagggataaggaaagattggacttctttctcctctttttttttcttttgctgtaactaggcatcaagaactgatctgcagccgcggcgtcctttcttggggttaatttcttggatgagcgatctaagaagcaaaaaaaaaggaaaatggaatgatcactgaaggctacttgctgtctctttttctctctagtttttatgctgattgcggcgacgatgctccgttctcttggtggttgccggcggcgacggtggcggcggcggcggcggtggcggcggtggctgttccgttgatgttgaagtcggtggcgtgtggaggaggaggaggtgaggtgtggttggtgggagggttgaatggcggggcggcggcggaggaggaggcgctgcggcgggcgctgtggccgccgaggtagttgtgcttgttgttgtgcatccagaccttgaagacgcccttgccgacgccgatgtcgcggcaccactcgtcgacgatggcctcgtcgcgcttctggaggcgccacccgagccgctccgagagctcctgcatccgctgcttctgctcggcggtgaacttggtgcggaaccgcttcctcggcatcccgccgccgccgccgccgccggggggaggcgcggccgccgccgccggcgacatcacctgcggcgggagcctctgcgcctgcccgctcgaccccagcgacagcagcatgtgcggcgccgaagggtagtacgcctggtgcgccaccgccgccgccagcggcggcggcggcggggacacggaccgctcgtcgtcgtactccgacccgtccgagtcggagtcggactcgtcgccatccaccccggggaggcggacctcgggcgtctcctccccgcggtgcggcggcatgggcggcgcgggcagcagcgccggcggcggcggcggcgggggggacccctccggcagccggcggtggaagttgcggtggcagccgcacgcggcgcacctgagcgacgtcgggtcggcggggttcgccgccggcgacggcatgaactccccgcacccgtccagcgcgtgcccgcccaggctcgccgcgtggttcttgaggcactcccggtacaccgtctctccccctccgccgccgcccaccgcaggcgccaccgccgccggcttcgccgccttcttgatggcgccgttggggaacacgagcggcttgtacttgacgtccatggcctccatggccactcgcccttgaccaaccaagcttaagcctactgctgctgcctaagctttggctttagcatgggacgacgggtcaagggagtgaggaaaacaacaggtaaggaggtgaagcgaaggcgaggagataagaataaaaaggccaaggaaagagagagagagagagagaggtgagagagtgagacacaaggggaatagagggaaaaaaactcattaatcaagtaattagtgacaccaataaaagtttgattggaaattaTtttttttttcttggagatataccatcagtgcactccatatattgaattgagtatggtgtggatgtgtcgtgaccggataaatacggaccgttagatcaaaagttgacggcgatacggatatacggtgacgccgcaaacgacatcggttttttgtttgacccttaaattgagctgtcattgacatcaccacataacccggag
More
|
||||||||||
| CDS seq | atggaggccatggacgtcaagtacaagccgctcgtgttccccaacggcgccatcaagaaggcggcgaagccggcggcggtggcgcctgcggtgggcggcggcggagggggagagacggtgtaccgggagtgcctcaagaaccacgcggcgagcctgggcgggcacgcgctggacgggtgcggggagttcatgccgtcgccggcggcgaaccccgccgacccgacgtcgctcaggtgcgccgcgtgcggctgccaccgcaacttccaccgccggctgccggaggggtcccccccgccgccgccgccgccggcgctgctgcccgcgccgcccatgccgccgcaccgcggggaggagacgcccgaggtccgcctccccggggtggatggcgacgagtccgactccgactcggacgggtcggagtacgacgacgagcggtccgtgtccccgccgccgccgccgctggcggcggcggtggcgcaccaggcgtactacccttcggcgccgcacatgctgctgtcgctggggtcgagcgggcaggcgcagaggctcccgccgcaggtgatgtcgccggcggcggcggccgcgcctccccccggcggcggcggcggcggcgggatgccgaggaagcggttccgcaccaagttcaccgccgagcagaagcagcggatgcaggagctctcggagcggctcgggtggcgcctccagaagcgcgacgaggccatcgtcgacgagtggtgccgcgacatcggcgtcggcaagggcgtcttcaaggtctggatgcacaacaacaagcacaactacctcggcggccacagcgcccgccgcagcgcctcctcctccgccgccgccccgccattcaaccctcccaccaaccacacctcacctcctcctcctccacacgccaccgacttcaacatcaacggaacagccaccgccgccaccgccgccgccgccgccaccgtcgccgccggcaaccaccaagagaacggagcatcgtcgccgcaatcagcataa
More
|
||||||||||
| Protein seq | MEAMDVKYKPLVFPNGAIKKAAKPAAVAPAVGGGGGGETVYRECLKNHAASLGGHALDGCGEFMPSPAANPADPTSLRCAACGCHRNFHRRLPEGSPPPPPPPALLPAPPMPPHRGEETPEVRLPGVDGDESDSDSDGSEYDDERSVSPPPPPLAAAVAHQAYYPSAPHMLLSLGSSGQAQRLPPQVMSPAAAAAPPPGGGGGGGMPRKRFRTKFTAEQKQRMQELSERLGWRLQKRDEAIVDEWCRDIGVGKGVFKVWMHNNKHNYLGGHSARRSASSSAAAPPFNPPTNHTSPPPPPHATDFNINGTATAATAAAAATVAAGNHQENGASSPQSA |
||||||||||
| Function | Zinc-finger homeodomain protein 9 [UniProtKB/Swiss-Prot:Q6ER21] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_09g0010120 | OsLaMu_09g0010120.01 | Chr09 | 15660780 | 15662744 | - | NAM | ||
| CDS seq | atggaggccatggacgtcaagtacaagccgctcgtgttccccaacggcgccatcaagaaggcggcgaagccggcggcggtggcgcctgcggtgggcggcggcggagggggagagacggtgtaccgggagtgcctcaagaaccacgcggcgagcctgggcgggcacgcgctggacgggtgcggggagttcatgccgtcgccggcggcgaaccccgccgacccgacgtcgctcaggtgcgccgcgtgcggctgccaccgcaacttccaccgccggctgccggaggggtcccccccgccgccgccgccgccggcgctgctgcccgcgccgcccatgccgccgcaccgcggggaggagacgcccgaggtccgcctccccggggtggatggcgacgagtccgactccgactcggacgggtcggagtacgacgacgagcggtccgtgtccccgccgccgccgccgctggcggcggcggtggcgcaccaggcgtactacccttcggcgccgcacatgctgctgtcgctggggtcgagcgggcaggcgcagaggctcccgccgcaggtgatgtcgccggcggcggcggccgcgcctccccccggcggcggcggcggcggcgggatgccgaggaagcggttccgcaccaagttcaccgccgagcagaagcagcggatgcaggagctctcggagcggctcgggtggcgcctccagaagcgcgacgaggccatcgtcgacgagtggtgccgcgacatcggcgtcggcaagggcgtcttcaaggtctggatgcacaacaacaagcacaactacctcggcggccacagcgcccgccgcagcgcctcctcctccgccgccgccccgccattcaaccctcccaccaaccacacctcacctcctcctcctccacacgccaccgacttcaacatcaacggaacagccaccgccgccaccgccgccgccgccgccaccgtcgccgccggcaaccaccaagagaacggagcatcgtcgccgcaatcagcataa
More
|
|||||||
| Protein seq | MEAMDVKYKPLVFPNGAIKKAAKPAAVAPAVGGGGGGETVYRECLKNHAASLGGHALDGCGEFMPSPAANPADPTSLRCAACGCHRNFHRRLPEGSPPPPPPPALLPAPPMPPHRGEETPEVRLPGVDGDESDSDSDGSEYDDERSVSPPPPPLAAAVAHQAYYPSAPHMLLSLGSSGQAQRLPPQVMSPAAAAAPPPGGGGGGGMPRKRFRTKFTAEQKQRMQELSERLGWRLQKRDEAIVDEWCRDIGVGKGVFKVWMHNNKHNYLGGHSARRSASSSAAAPPFNPPTNHTSPPPPPHATDFNINGTATAATAAAAATVAAGNHQENGASSPQSA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.500324 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0414600 | RBH | 7.595418 | 8.025684 | 0.113910 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g24820 | RBH | 1.612064 | 1.592263 | 0.465010 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0414600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0010240 | RBH | 1.400495 | 0.0 | 2.818397 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0010190 | RBH | 1.067494 | 0.0 | 3.006703 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0010490 | RBH | 3.296664 | 0.0 | 4.792741 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0010250 | RBH | 0.511023 | 0.030437 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0010360 | RBH | 9.535378 | 0.0 | 1.916476 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0249500 | RBH | 17.6649395 | 3.061816 | 8.304411 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0010340 | RBH | 1.168656 | 0.0 | 1.009555 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0235700 | RBH | 17.767122 | 2.2277665 | 37.919159 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0010320 | RBH | 0.510961 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0010090 | RBH | 0.777410 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0010250 | RBH | 8.653177 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0010050 | RBH | 1.986592 | 0.0 | 1.787524 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0016890 | RBH | 0.572485 | 0.856837 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010590 | RBH | 1.164547 | 0.0 | 2.424801 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0010380 | RBH | 5.034145 | 0.0 | 3.927461 |
