Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_09g0009000 | OGI:09040050 | 11/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr09:14154692-14155944 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggatggatatgacatattatagtgtaatgaatctagaaatacggtattacaacggaaggagtaattacattataactataccatattaaaaagaatgcaaccgtggtgtcagttcccaccagaccaccaggctgacttgtgcggccacattgtcggtgggagggggcgccggcgccggatccacatgcgtgaggggcagataggcggtggccgggatccacgcggtagtgggagcgggcaccggatcattctaggcgcgtgggggacggagaggcgacgggatctgtggcctgcggggaagaggaagggggcgccagatccgcccttcccatctccaacgccggcggatccttcgcgcctcaatgagccaccggcgcccccgacctactcctgcctggcgcgacgcccccgggctcctccctactgttgcccagtgctcgctccgccaccgtgccgcgtccacctcggtcgcgcccagccgccgcccaggcccaagccatgcgtcgccgaggcgccacgccaccaCccccacacgactctccccatggccgcccaccgccgccttggtcacacgagccacgtgccgtcgcctagtgctagccgcgctgccgagcccggccgtcggctccctctccctcgggcgctcctgagcagaggaaagacaaagaaagaaagagagagaaagaaacaataaggatagagaaagcttagcgcaccgctctcgatttgccgctggcgctgtcgccgctagggccgcccggcttcggcgtcgctcgcgccacgtgccgccctcgatctgccgctggcgcctcgcgccgcctgccggctccgtcgcccggcagcctcggttcctctggtgggggaagaaaatggaggagagagataaggctttcctccggtgggaataaaaaaagagaggagagagggagagttgaaaagtagtaaaaaagatggcaccagtggtacaagcaatttgcattgtggaacatgtagcttagggcctgttcactttgatgccaaaaaaaaccttatcaaattttggcaactatgccctaaaatttggcagcaaactaaatgtagccattttttttgcaactttaccaaaatttggtatggTtttttttggcatcaaaatgaacaggcccttaaggcgtttctggtctacgtggcccacgaggaacgacaaatacaagtgacgcactgctaatgccctaatagtccacaagtgttaacatttttacattcaaatccat
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| CDS seq | atggatttgaatgagcgcccgagggagagggagccgacggccgggctcggcagcgcggctagcactaggcgacggcacgtggctcgtgtgaccaaggcggcggtgggcggccatggggagagtcgtgtggggGtggtggcgtggcgcctcggcgacgcatggcttgggcctgggcggcggctgggcgcgaccgaggtggacgcggcacggtggcggagcgagcactgggcaacagtagggaggagcccgggggcgtcgcgccaggcaggagtaggtcgggggcgccggtggctcattgaggcgcgaaggatccgccggcgttggagatgggaagggcggatctggcgcccccttcctcttccccgcaggccacagatcccgtcgcctctccgtcccccacgcgcctag
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| Protein seq | MDLNERPREREPTAGLGSAASTRRRHVARVTKAAVGGHGESRVGVVAWRLGDAWLGPGRRLGATEVDAARWRSEHWATVGRSPGASRQAGVGRGRRWLIEARRIRRRWRWEGRIWRPLPLPRRPQIPSPLRPPRA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_09g0009000 | OsLaMu_09g0009000.01 | Chr09 | 14154942 | 14155944 | - | NAM | ||
| CDS seq | atggatttgaatgagcgcccgagggagagggagccgacggccgggctcggcagcgcggctagcactaggcgacggcacgtggctcgtgtgaccaaggcggcggtgggcggccatggggagagtcgtgtggggGtggtggcgtggcgcctcggcgacgcatggcttgggcctgggcggcggctgggcgcgaccgaggtggacgcggcacggtggcggagcgagcactgggcaacagtagggaggagcccgggggcgtcgcgccaggcaggagtaggtcgggggcgccggtggctcattgaggcgcgaaggatccgccggcgttggagatgggaagggcggatctggcgcccccttcctcttccccgcaggccacagatcccgtcgcctctccgtcccccacgcgcctag
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| Protein seq | MDLNERPREREPTAGLGSAASTRRRHVARVTKAAVGGHGESRVGVVAWRLGDAWLGPGRRLGATEVDAARWRSEHWATVGRSPGASRQAGVGRGRRWLIEARRIRRRWRWEGRIWRPLPLPRRPQIPSPLRPPRA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_09g0009000 | OsLaMu_09g0009000.02 | Chr09 | 14154692 | 14155607 | - | IsoSeq | ||
| CDS seq | ctttttttattcccaccggaggaaagccttatctctctcctccattttcttcccccaccagaggaaccgaggctgccgggcgacggagccggcaggcggcgcgaggcgccagcggcagatcgagggcggcacgtggcgcgagcgacgccgaagccgggcggccctagcggcgacagcgccagcggcaaatcgagagcggtg
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| Protein seq | LFLFPPEESLISLLHFLPPPEEPRLPGDGAGRRREAPAADRGRHVARATPKPGGPSGDSASGKSRAV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.282957 | 8.316038 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0392666 | RBH | 6.290589 | 8.093001 | 2.227024 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g22505 | RBH | 4.036599 | 5.136016 | 0.540925 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0392666 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0009070 | RBH | 0.888939 | 2.290266 | 6.680144 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0009090 | RBH | 0.236399 | 0.208269 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0009290 | RBH | 7.372497 | 25.844917 | 15.036737 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0230500 | RBH | 5.874112 | 18.886707 | 10.4952495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0009250 | RBH | 0.607878 | 0.461357 | 1.372031 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0215100 | RBH | 6.416569 | 21.7466155 | 14.1251465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0009240 | RBH | 0.793696 | 0.539593 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0009160 | RBH | 8.328101 | 16.699177 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0008980 | RBH | 1.451326 | 0.0 | 0.624811 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G009530 | RBH | 0.956969 | 5.425574 | 7.077279 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0009310 | RBH | 5.261337 | 4.236453 | 9.978324 |
