Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_09g0007820 | OGI:09036670 | 3/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr09:12919126-12920226 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacggctcaggcgagggtgaagctgatgctgataaagtgaggttactggcaagccgggagtagtgacaggcaaaggaaagaaaggccttgagatgttcagacattcaagttcaaatctctatgtgaaatcaaatttagaaaatctattatatactaaaggaaaaagtacgaattaCcccccccccgaactatcgcggtcgtccgaattaccccctgaaccacaaaaccggatattcttcacatccaactatacaaatcggacgaattaccccactcgatccaatccgcggtggttttggtctacgtggcgtacacgtgtcatccctgtcagcgttttttaattaaaaaatagtgggacccgcctgtcatactctcccacctctctctcttccccactttgctctcaatctctctctcttcccctcttcctctcaatctctctctctgcagcgtgcattggggcgagcggcggacggcggcgtcgcggctacggccgagcggaggtgactgcggcggcagctgcgggcgcggcgcatgggggcgggcggcgaacggcgactgcgggcgcggagcacgggggcgggcggtggactgcggcgtcgcggcgacggctgcgggcgcggagcacgtgggcgggcggcggacgtgcccgtggtagctgatgattgcatgatggagacgcttcttctgggaggcgcggccaccctgctgctgctcctgaccatcattggcctgcggcatgacttgttcaagtatgcttcttaagatggcctcaacgtcggagctctgagacaccgtgaccatcgcccggaggtcaaattgatcgccgagttgccggtacaatgccgtggcgatggctgtcttCcccacccctccgaatccgaggacggacagcacgccatctttgtattcctcgttcgtcacccatttcgtcagctccttgatgtagtccactcccaccagctccttcacgccgaccagctcaaggtttatatgctggttctcggcggcatcaaatcaattaatggtgtctgtaccggatttgttctctctttttgggagaacctcgtgcgccgctcgccgatctgctgcgcccgcat
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| CDS seq | atgcgggcgcagcagatcggcgagcggcgcacgaggttctcccaaaaagagagaacaaatccgcatataaaccttgagctggtcggcgtgaaggagctggtgggagtggactacatcaaggagctgacgaaatgggtgacgaacgaggaatacaaagatggcgtgctgtccgtcctcggattcggaggggtgggGaagacagccatcgccacggcattgtaccggcaactcggcgatcaatttgacctccgggcgatggtcacggtgtctcagagctccgacgttgaggccatcttaagaagcatacttgaacaagtcatgccgcaggccaatgatgcatcagcttcaccctcgcctgagccgtag |
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| Protein seq | MRAQQIGERRTRFSQKERTNPHINLELVGVKELVGVDYIKELTKWVTNEEYKDGVLSVLGFGGVGKTAIATALYRQLGDQFDLRAMVTVSQSSDVEAILRSILEQVMPQANDASASPSPEP |
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| Function | Disease resistance protein Piks-2 [UniProtKB/Swiss-Prot:P0DO10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_09g0007820 | OsLaMu_09g0007820.01 | Chr09 | 12919126 | 12920226 | - | NAM | ||
| CDS seq | atgcgggcgcagcagatcggcgagcggcgcacgaggttctcccaaaaagagagaacaaatccgcatataaaccttgagctggtcggcgtgaaggagctggtgggagtggactacatcaaggagctgacgaaatgggtgacgaacgaggaatacaaagatggcgtgctgtccgtcctcggattcggaggggtgggGaagacagccatcgccacggcattgtaccggcaactcggcgatcaatttgacctccgggcgatggtcacggtgtctcagagctccgacgttgaggccatcttaagaagcatacttgaacaagtcatgccgcaggccaatgatgcatcagcttcaccctcgcctgagccgtag
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| Protein seq | MRAQQIGERRTRFSQKERTNPHINLELVGVKELVGVDYIKELTKWVTNEEYKDGVLSVLGFGGVGKTAIATALYRQLGDQFDLRAMVTVSQSSDVEAILRSILEQVMPQANDASASPSPEP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.424219 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0003110 | SBH | 0.247283 | 2.441939 | 0.951202 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0003220 | SBH | 0.0 | 0.0 | 0.453693 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007360 | SBH | 0.000000 | 0.0 | 0.491535 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0003140 | SBH | 0.062246 | 0.085145 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0003310 | SBH | 0.763126 | 0.0 | 2.742213 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0003220 | SBH | 0.141301 | 0.0 | 0.227515 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0193000 | RBH | 0.0155945 | 0 | 0.2023155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0003260 | SBH | 0.090739 | 0.044362 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0019810 | RBH | 0.090526 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0003280 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0015330 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G003290 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0003180 | SBH | 0.133272 | 0.0 | 0.0 |
