Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_09g0007200 | OGI:09034840 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr09:12279225-12284079 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtctccacgcgacgcctccatcgtctccatcgtctcgccgcggagaagaagaagaagagctcgcacgcgcgcgcgcatccatctctctcctagggttcgtgcgttgattcggcggcggtggaggtggaggaggagggggttggattcgggaggtttgtgtgggggtgtggggggggggggtgagagatggcgggggggaagaagcggaaggcggaggcggcgcggctggaggagacggacagggcgctgtacggggcgttccggggcgcggccaactcgctgtcccagctctacacgctcgccatgggcggccagaagctctccttccaggccggcgagcgccacgccatggtacggccctccccgaccctcccgtcttcccttcttcctgtgatgggttgtgggtgtttgggggttcggtctgatgtgatgtgatgtggtgtgggcgtgttgttctggggatgtttggggatttctcggttttgcagcgggaggattcggtttccccggtgaatttggcctttctgtggtgtttgtgttgtggggaaaggcttgtttttcggctcgatttgatgagggatttttgttccgatgcgccttcttgttagtgaaattcagattccctaagaaatttgtgtgttcgattgacccctctagtgatgtggaaattttctgaaattttggtgaaattttgattatgctttctgaaatttaggtgaaattttgattcctgtatgttttctgcctgaatctggtacctaccatgcacatataaatttcgaatagtgggtaaagaccaactaattctgtatgcaattttagttcgtagtgcgtcccttgacctcaccgaatattatattcttcgtgatgcgatgcgccaatacaattgatagcttcacaagtgctctcgcactagtagtgcgattctcgtagttgttatatcatcagttgccttttaacggcgatgcagccaaactcatttgcttcaattgtcggtgatctttttctccaataggttctgtgccaatatggctttttccacctctgggttgaaatggttgtagacatcccacccttgtgctttacaagactcaggattaggttgctctcagagggggaggggaatggaaagcagatgagaggaggcttagcttgtggaacaggttacttctgcactagtactatggatgcatccttttcagctttgcttcaacttgtgtactgttaaatgtaaagtatcgccagttggtgtgggatgcttctttcagacttggatggcattgttagcttatgcagttgcggtttacgaggatgttgatacttagttatgtttgctgattttggttttgctgtggctctgtggatccagtcctggcctattctggtgctgtttgacttcgtcaagcatcaaaactgtctgttttcgtttcctcttaaagacttaatgtgatgtgcaagacttttgcatgttcttgcaaaagctttggacggcatatcttggtattaatgcttggaaacatcctgaagctatggtttgatcagaactcaagatgtggctcagctgtgttcctggtctttgttttcacaggacagggaaacactctagctaactaccattgagcattgtctgctttactcatcagatgacaatattactagactctcatcaaacaatacactagccaatgcattggatattggcattgtttgtacatcacagagtaatgctttgtgttggcatttagagaggtttatgttttctagtagcccaatgcaatgtcaactaggatcaaagaagttcctgctcatttgacatatgccttacaaacagagttagcatatagaacagttacttcaatggattcttgaattttgtactttgaagacagatggtcgttgcagggtgtacacatttagttctttgcaaagctttctgtttcattgttaagtatcccaaataaaagatgggttccatccctacttctagagaaactccaaccttcttaatggctggagaactgttcatgccaaactgtcttgttttcctccacaaaatgagttttttgttcttccatgtggacaattcttgctgtttaaagccaggagcctattttctgggttctatacaaacattcattaatcacatagttttctgactctgttgcttgtggtgaagtactggacgattccctccggtcatggaaacatgttgttttggacatggacatgatctacaagatacagttttggtcactaatttctattgtgaaatatttggaaaccccaaaaaagattactatgcttgttttttgagacaagacaatccacagatatgattttcatgcggccaatctaaaaatttAaaaatataccttgtgcaaagtttataaagtttgagttgaaagttgaagcacttcacatgttatcgtgactggagggagtattggctgccatcgagagtaatgacggttgggtcacgcatacctaaaacctagacatattttgtacagaaaaacacatttctcttctttttcaacatttttttctttgactactcgacatctgtttcattgttttgtatttccccctttcactagtgtttctcaatctttttctaactgatgcaggaaaagctctatgaatggatcttgaggcagcatgaaaatggcttgaggctgacagttgctgatatagcctcgcacatccaggtttgcagttatcatcctccaagaactatttaattatcctctaaatttataacatggccttgaagaacttgtttagattttcctttcatgctcattgtttttttttgtgaatacacctgactgcaaaaccctaatgaactagataaaactccttatttgccatttaatgctaactcaatggaaacgcggcattcccttactgccactagttcactattgcctttcattatttgccacgtccgtcaactctgttaggatgaaacaccattaaccgtggatccacctttttttttttggaaatattccatttgtaccctcacaaaatgggtgccatctttttcttctggccatacccacagcacctaagtccatccgttgccatctagaattctagatggacctgaactggtgccactgtttgttggcagaagctttggctagtcagcctctgtggctccaccaaatgctcagcaccatgatctggcttgagaatccggtgagcttgcatttgtacgctgctgttcttttggggaatggatgcagggatagatatggcttggaaatccggtgagcttggatcggtgtcgtatgattgaccatgtttttcaggttatatgggaatagcaattttatgctacaagacatggtttgattgggcattaggtgagtataatacttctagtgccactccccagcaagcttgaatcctctagacctagtgccatgctagacacaagtattaagtgtctggtcttattgttttggaatgggactataggattgtgcagattgttattttttttgttgcatagcatgacttcattttcttataagtttgtaaaatttgcgaaagtacttcctggatttggtggataccaccaatgtggcggcacatctcttacatgccaccaaggatgaccatgctagatgcccatgaatctgcctcattggaatggatgcaggcattaggcacacaacccatattcactagccattgctggtaaggatgcctacctttggtagagggtgagtgctctgtcatgtgttcaggaagaacgaagccgctgggttggatgagtttactgttctgttgctggcattttttttaaatttaccatggataaggaagagaaggagaaacgaggaattaggaagaatgaggaagggcaaattatcttttcttgtttagtttaacagcaagatgacagaaggggcaaatgggaagacaaaatgaactagttgcaaataagggaacatcatttttttatcctgtaagggataaggtttatatttgatggcaaataaggaaatgaataagatgaatcctatgctttgattgttttctttgccaattcatgcctccaggctccagctacaacttttcaaaatatagtttgtacttatgccgtatcttctccttaagcaccatcctagacctagcacaactacatgtgcctaataatcatctgtgtttgtagcacgagatccagtatggaggtgacaatgcatcagcctctccaagatcacagcatgcaagccaaagcactcaagctacagtgcctattcccaacacaatgagccagcagccatcaccaaacttatttgcgctaggaaatacaggattggtgcagtccaagaactcagcggtcttttcaaatgcactatctagccccgttcgccggagcctgcaaccattccacctggagcagggtggcgatgcggggtacttcgcaaacggcgttaaccgcgatcaaaactcgacggcttcgaacgattcatccatggacatgcattcagacagcccagctcatgactcttactgagttgtttgccccctctgtggagctggaagagcaacacttccagtggaacagaatgtgtgcctttgctaccacagctcatgtaggactattcaatttaacccccctcccctagcctccaatgatgctaagcttgtattctgttgctgccaatcaccagttactagtaccgattacattgctaagatattgtaacttgcatgtatttatgtccagagtaaaactgtactcggtttacctgtgcatactactacagttggtatgtggtgaaaatgtaggtggcaaagcaaaattgagaagaataaacagtattgtactgttgttccc
More
|
||||||||||
| CDS seq | atggcgggggggaagaagcggaaggcggaggcggcgcggctggaggagacggacagggcgctgtacggggcgttccggggcgcggccaactcgctgtcccagctctacacgctcgccatgggcggccagaagctctccttccaggccggcgagcgccacgccatggaaaagctctatgaatggatcttgaggcagcatgaaaatggcttgaggctgacagttgctgatatagcctcgcacatccagcacgagatccagtatggaggtgacaatgcatcagcctctccaagatcacagcatgcaagccaaagcactcaagctacagtgcctattcccaacacaatgagccagcagccatcaccaaacttatttgcgctaggaaatacaggattggtgcagtccaagaactcagcggtcttttcaaatgcactatctagccccgttcgccggagcctgcaaccattccacctggagcagggtggcgatgcggggtacttcgcaaacggcgttaaccgcgatcaaaactcgacggcttcgaacgattcatccatggacatgcattcagacagcccagctcatgactcttactga
More
|
||||||||||
| Protein seq | MAGGKKRKAEAARLEETDRALYGAFRGAANSLSQLYTLAMGGQKLSFQAGERHAMEKLYEWILRQHENGLRLTVADIASHIQHEIQYGGDNASASPRSQHASQSTQATVPIPNTMSQQPSPNLFALGNTGLVQSKNSAVFSNALSSPVRRSLQPFHLEQGGDAGYFANGVNRDQNSTASNDSSMDMHSDSPAHDSY |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_09g0007200 | OsLaMu_09g0007200.01 | Chr09 | 12279225 | 12284071 | + | NAM | ||
| CDS seq | atggcgggggggaagaagcggaaggcggaggcggcgcggctggaggagacggacagggcgctgtacggggcgttccggggcgcggccaactcgctgtcccagctctacacgctcgccatgggcggccagaagctctccttccaggccggcgagcgccacgccatggaaaagctctatgaatggatcttgaggcagcatgaaaatggcttgaggctgacagttgctgatatagcctcgcacatccagcacgagatccagtatggaggtgacaatgcatcagcctctccaagatcacagcatgcaagccaaagcactcaagctacagtgcctattcccaacacaatgagccagcagccatcaccaaacttatttgcgctaggaaatacaggattggtgcagtccaagaactcagcggtcttttcaaatgcactatctagccccgttcgccggagcctgcaaccattccacctggagcagggtggcgatgcggggtacttcgcaaacggcgttaaccgcgatcaaaactcgacggcttcgaacgattcatccatggacatgcattcagacagcccagctcatgactcttactga
More
|
|||||||
| Protein seq | MAGGKKRKAEAARLEETDRALYGAFRGAANSLSQLYTLAMGGQKLSFQAGERHAMEKLYEWILRQHENGLRLTVADIASHIQHEIQYGGDNASASPRSQHASQSTQATVPIPNTMSQQPSPNLFALGNTGLVQSKNSAVFSNALSSPVRRSLQPFHLEQGGDAGYFANGVNRDQNSTASNDSSMDMHSDSPAHDSY |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_09g0007200 | OsLaMu_09g0007200.02 | Chr09 | 12283825 | 12284079 | + | IsoSeq | ||
| CDS seq | cacagctcatgtaggactattcaatttaacccccctcccctagcctccaatgatgctaagcttgtattctgttgctgccaatcaccagttactagtaccgattacattgctaagata |
|||||||
| Protein seq | HSSCRTIQFNPPPLASNDAKLVFCCCQSPVTSTDYIAKI |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.342218 | 1.865211 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0360400 | RBH | 2.114428 | 1.832060 | 7.688178 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g19640 | RBH | 1.392899 | 1.225396 | 1.919105 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0360400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007310 | RBH | 0.831646 | 12.004274 | 4.561262 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007290 | RBH | 0.462066 | 0.000000 | 3.062989 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007520 | RBH | 3.601474 | 7.118907 | 9.973007 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007340 | RBH | 0.841376 | 0.185500 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007470 | RBH | 7.120754 | 0.000000 | 25.893421 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0202800 | RBH | 10.5725225 | 18.936256 | 20.1005575 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0007430 | RBH | 0.759773 | 1.151696 | 1.345486 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0181600 | RBH | 9.2468905 | 14.294968 | 14.180522 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007390 | RBH | 0.227386 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007210 | RBH | 0.157989 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007120 | RBH | 6.470569 | 30.559952 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0007130 | RBH | 0.084709 | 0.0 | 0.740213 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0014630 | RBH | 0.304943 | 4.245381 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007730 | RBH | 0.287150 | 0.814495 | 2.456125 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0007530 | RBH | 0.850125 | 14.393740 | 7.421800 |
