Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_09g0006160 | OGI:09030520 | 14/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr09:10697711-10698834 | ||||||||
| Gene Symbol | RLCK262, OsRLCK262 | ||||||||||
| DNA seq | atggcggtatcaaacactcgagctgtattgctcttgctatcggcgtggccatacctaatacagctttgttatgcttctactctctcttacaatttctcggatccacaaagcttcacctcaggggatctacattttgaaggtgatgcatacctcggcgacacctcggtcgtcctggccaagaagggcaccggcgaagtcaacccaaaggccggacgaatactgtacaagcaaccgtgccatctctggagcaacaccaccggcgaggtaacgagcttcaccaccaccttctccttcctcatgaacggcggacagggcgggctggcattcttcctcacgtcctacctgccgatggtcgccggcgccggccagaacgcgccagcaggcggcggcgatcagcaaacggtcgccgtggagttcgacacccatgggaatcctgggtggagcccgaccatgtctacgcacaactcgtcggagaagaaagcttacaaggtcgtcaccggcgaccttgccaacggtgaatcgaagattgtgcggataaactacatcaatacatcgaacgttctcgctgtcacgcttggtgatctcaagacgagcacttctctcatactcaacacaagcgttgacttgaggcggtttctgccgcaagaagttaccatgcgcttctcggctaccactgccccagccacaggttcttcacaactcgtgtcccgtgaggtgctctggtggtcattcagcacctacctgacagaaggtaatctgccgacgctgaaatccactcctctattatctggtatgactagtactcgaattaataagggttaattggattcatgccactgcaaatatgataaattagaaaaatgccactactattcacaatatcagctgggtgccactggaattttgataaattagatccgtgccactccgtcgcgttttccgtccttccccgttagtttcactccgtgccgccgtgagggctgagaccgagactgattaacaattgctgaatatctgaaatcaaaaatcaaaaaccaaaaacgatgtacaactagctaatcgcaacatgtaaagatggatttgtgaaagtaattaatcaatcaagaggtgcagtgtgtcactga
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| CDS seq | atggcggtatcaaacactcgagctgtattgctcttgctatcggcgtggccatacctaatacagctttgttatgcttctactctctcttacaatttctcggatccacaaagcttcacctcaggggatctacattttgaaggtgatgcatacctcggcgacacctcggtcgtcctggccaagaagggcaccggcgaagtcaacccaaaggccggacgaatactgtacaagcaaccgtgccatctctggagcaacaccaccggcgaggtaacgagcttcaccaccaccttctccttcctcatgaacggcggacagggcgggctggcattcttcctcacgtcctacctgccgatggtcgccggcgccggccagaacgcgccagcaggcggcggcgatcagcaaacggtcgccgtggagttcgacacccatgggaatcctgggtggagcccgaccatgtctacgcacaactcgtcggagaagaaagcttacaaggtcgtcaccggcgaccttgccaacggtgaatcgaagattgtgcggataaactacatcaatacatcgaacgttctcgctgtcacgcttggtgatctcaagacgagcacttctctcatactcaacacaagcgttgacttgaggcggtttctgccgcaagaagttaccatgcgcttctcggctaccactgccccagccacaggttcttcacaactcgtgtcccgtgaggtgctctggtggtcattcagcacctacctgacagaagtgtgtcactga
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| Protein seq | MAVSNTRAVLLLLSAWPYLIQLCYASTLSYNFSDPQSFTSGDLHFEGDAYLGDTSVVLAKKGTGEVNPKAGRILYKQPCHLWSNTTGEVTSFTTTFSFLMNGGQGGLAFFLTSYLPMVAGAGQNAPAGGGDQQTVAVEFDTHGNPGWSPTMSTHNSSEKKAYKVVTGDLANGESKIVRINYINTSNVLAVTLGDLKTSTSLILNTSVDLRRFLPQEVTMRFSATTAPATGSSQLVSREVLWWSFSTYLTEVCH |
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| Function | Bark lectin (Fragment) [UniProtKB/Swiss-Prot:P93538] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_09g0006160 | OsLaMu_09g0006160.01 | Chr09 | 10697711 | 10698834 | + | NAM | ||
| CDS seq | atggcggtatcaaacactcgagctgtattgctcttgctatcggcgtggccatacctaatacagctttgttatgcttctactctctcttacaatttctcggatccacaaagcttcacctcaggggatctacattttgaaggtgatgcatacctcggcgacacctcggtcgtcctggccaagaagggcaccggcgaagtcaacccaaaggccggacgaatactgtacaagcaaccgtgccatctctggagcaacaccaccggcgaggtaacgagcttcaccaccaccttctccttcctcatgaacggcggacagggcgggctggcattcttcctcacgtcctacctgccgatggtcgccggcgccggccagaacgcgccagcaggcggcggcgatcagcaaacggtcgccgtggagttcgacacccatgggaatcctgggtggagcccgaccatgtctacgcacaactcgtcggagaagaaagcttacaaggtcgtcaccggcgaccttgccaacggtgaatcgaagattgtgcggataaactacatcaatacatcgaacgttctcgctgtcacgcttggtgatctcaagacgagcacttctctcatactcaacacaagcgttgacttgaggcggtttctgccgcaagaagttaccatgcgcttctcggctaccactgccccagccacaggttcttcacaactcgtgtcccgtgaggtgctctggtggtcattcagcacctacctgacagaagtgtgtcactga
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| Protein seq | MAVSNTRAVLLLLSAWPYLIQLCYASTLSYNFSDPQSFTSGDLHFEGDAYLGDTSVVLAKKGTGEVNPKAGRILYKQPCHLWSNTTGEVTSFTTTFSFLMNGGQGGLAFFLTSYLPMVAGAGQNAPAGGGDQQTVAVEFDTHGNPGWSPTMSTHNSSEKKAYKVVTGDLANGESKIVRINYINTSNVLAVTLGDLKTSTSLILNTSVDLRRFLPQEVTMRFSATTAPATGSSQLVSREVLWWSFSTYLTEVCH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0334800 | SBH | 0.142329 | 0.582640 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g16700 | SBH | 0.117091 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0334800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0006200 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0006220 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0006440 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0006280 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0181800 | SBH | 0 | 0.014701 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0156900 | SBH | 0 | 0.027686 | 0.026255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0006360 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0006160 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0006210 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0006200 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006510 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0006430 | SBH | 0.0 | 0.0 | 0.0 |
