Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_09g0005830 | OGI:09029040 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr09:10218065-10220395 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cattttaactgggcaattattcacctcatcaattgtacacagctgaacatccattttacattattactgtacgaaagagtcgtgtgaaacagtccacaaactagtcacatgatgttattagccatctacaaaatatcaatatgaataccctgcaattcatcaaattctacaatgaaaaccacctaccattggagtacaggtaaattggccctaaaatgcatcctgtccagaagcgaaaatgcctagtttatccttgagcagttaatctaagggagtttccatgccgtcctgtttttcttctctgacgccatctttccttaatatcattgcactcttctgttagatgatctctactagtatcacactttccctcaacatattgcttgtcaatagcattatttgccaaacctcgcagccgagcagtttccgctatcagatcattgaccagcatctcagttgtcctcgtggtaatccctctcagataccatgaaaacggaggcgggggtaccatagcaggttcaataagctgatccaaggtaattgaagatccaactcttcctgtgccattggtgcaggaatcatacttttctaatgtgcatgggtctaaaggatggcatgcttccttgtcaacaaatagaggctctattttccagcaaccttcaaatttcttcataaaacctgttcttccttgcttgaactttacctgccaatagttgttgcatgaagccacatatcagagaatgtatcttagctgtttctcaaagactagtagcaatgtttcaagtctttacagtgtgatttgttctgttctggtcgacaaaaacatgaactgacaagacaccagaccaccagagaaatctccatattgctgcctgctccacttcaactatttgcctttgtccttcatcaagcacgactttccgtgatattacttcctgaaaattggaacaagaactttctcacgagtacttggccggttaagatactagagcaattcctctgctcatttggtatcagtaaccaaatcagggaaatcaagcaagtgccacaatatcatgatgaatgagccttcatgtttcctgttaccctattcaggaacttgcttatacataccttgatgtttttgaaaactcttttgttctctggatcaattataatgttgtaaactgcgtctggaggtaatcctgccttaaatttcagattcaggttgcaaagagagccttgtggcacagtcacctgtaaagatttgatcatataaggttagcattagcatttcaacaagacagtagtcgcctacattgctcattcctgaaatctcccacaaaatgatgaacaactataagtgttttttttttccaaaattactgaatacatcaaattgaggttgaagaaaatattcgggggtttacaatgagaagaaagttagcggttctggtaaatatattatataactgttgttctcagacaatcagttaaccaccatttcattttctgaaagagcccaacttcaatcgatttgtatatgacctacaatcatttctaacactgaaagaactacaaacaccttgatttctggaggttcatcagaccaaataggattgttcttccaagcttggagctgcttgtccaacctaacctcaggagcaacagtagtacaagttccctgcatttgcatcggcagcatttcggcctctgaaccaccaccaaagccattcttcttcaagaaacgcccaaaatgcacctgtagcaagatccaaccaaacgaactcaaaccttcccagctaattcgaactcctctAaaaaaaaaaaaatcctcacttctgaagAaaaaaaaacaaccttgagagagttctgaatcttatccggtatctgcacgaggctaccgaatccccgcgcaggcacgggttcacgattactgcttcccatcaagaaaccgaatctggtagatgattccctcggtcactgaaacaggaacaaaacccaaatctttgctacatcaatctttcagacccagaaagcagattgatgcacccggctacaacaagaagcaatcttgcatcgaaattaccccaaaaaaagagctttgaagtaagaggacacaatataatggagaggtaagtgcaagatctaaccagagagaaatggaagaatcagagctcggctcaggtggcgactggctctgaaatggaagggcctaaggaaaaagagaggcttttcttgctcggaccaatcatggagttgaacggaggaacacgaaaccacgggaagggacgaggattggtcgattggaggaagcacgtcgaatccagcaataaaatgaatcaaagtgac
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| CDS seq | atgggaagcagtaatcgtgaacccgtgcctgcgcggggattcggtagcctcgtgcagataccggataagattcagaactctctcaaggtgcattttgggcgtttcttgaagaagaatggctttggtggtggttcagaggccgaaatgctgccgatgcaaatgcagggaacttgtactactgttgctcctgaggttaggttggacaagcagctccaagcttggaagaacaatcctatttggtctgatgaacctccagaaatcaaggtgactgtgccacaaggctctctttgcaacctgaatctgaaatttaaggcaggattacctccagacgcagtttacaacattataattgatccagagaacaaaagagttttcaaaaacatcaaggaagtaatatcacggaaagtcgtgcttgatgaaggacaaaggcaaatagttgaagtggagcaggcagcaatatggagatttctctggtggtctggtgtcttgtcagttcatgtttttgtcgaccagaacagaacaaatcacactgtaaagttcaagcaaggaagaacaggttttatgaagaaatttgaaggttgctggaaaatagagcctctatttgttgacaaggaagcatgccatcctttagacccatgcacattagaaaagtatgattcctgcaccaatggcacaggaagagttggatcttcaattaccttggatcagcttattgaacctgctatggtacccccgcctccgttttcatggtatctgagagggattaccacgaggacaactgagatgctggtcaatgatctgatagcggaaactgctcggctgcgaggtttggcaaataatgctattgacaagcaatatgttgagggaaagtgtgatactagtagagatcatctaacagaagagtgcaatgatattaaggaaagatggcgtcagagaagaaaaacaggacggcatggaaactcccttagattaactgctcaaggataa
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| Protein seq | MGSSNREPVPARGFGSLVQIPDKIQNSLKVHFGRFLKKNGFGGGSEAEMLPMQMQGTCTTVAPEVRLDKQLQAWKNNPIWSDEPPEIKVTVPQGSLCNLNLKFKAGLPPDAVYNIIIDPENKRVFKNIKEVISRKVVLDEGQRQIVEVEQAAIWRFLWWSGVLSVHVFVDQNRTNHTVKFKQGRTGFMKKFEGCWKIEPLFVDKEACHPLDPCTLEKYDSCTNGTGRVGSSITLDQLIEPAMVPPPPFSWYLRGITTRTTEMLVNDLIAETARLRGLANNAIDKQYVEGKCDTSRDHLTEECNDIKERWRQRRKTGRHGNSLRLTAQG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_09g0005830 | OsLaMu_09g0005830.01 | Chr09 | 10218065 | 10220395 | - | NAM | ||
| CDS seq | atgggaagcagtaatcgtgaacccgtgcctgcgcggggattcggtagcctcgtgcagataccggataagattcagaactctctcaaggtgcattttgggcgtttcttgaagaagaatggctttggtggtggttcagaggccgaaatgctgccgatgcaaatgcagggaacttgtactactgttgctcctgaggttaggttggacaagcagctccaagcttggaagaacaatcctatttggtctgatgaacctccagaaatcaaggtgactgtgccacaaggctctctttgcaacctgaatctgaaatttaaggcaggattacctccagacgcagtttacaacattataattgatccagagaacaaaagagttttcaaaaacatcaaggaagtaatatcacggaaagtcgtgcttgatgaaggacaaaggcaaatagttgaagtggagcaggcagcaatatggagatttctctggtggtctggtgtcttgtcagttcatgtttttgtcgaccagaacagaacaaatcacactgtaaagttcaagcaaggaagaacaggttttatgaagaaatttgaaggttgctggaaaatagagcctctatttgttgacaaggaagcatgccatcctttagacccatgcacattagaaaagtatgattcctgcaccaatggcacaggaagagttggatcttcaattaccttggatcagcttattgaacctgctatggtacccccgcctccgttttcatggtatctgagagggattaccacgaggacaactgagatgctggtcaatgatctgatagcggaaactgctcggctgcgaggtttggcaaataatgctattgacaagcaatatgttgagggaaagtgtgatactagtagagatcatctaacagaagagtgcaatgatattaaggaaagatggcgtcagagaagaaaaacaggacggcatggaaactcccttagattaactgctcaaggataa
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| Protein seq | MGSSNREPVPARGFGSLVQIPDKIQNSLKVHFGRFLKKNGFGGGSEAEMLPMQMQGTCTTVAPEVRLDKQLQAWKNNPIWSDEPPEIKVTVPQGSLCNLNLKFKAGLPPDAVYNIIIDPENKRVFKNIKEVISRKVVLDEGQRQIVEVEQAAIWRFLWWSGVLSVHVFVDQNRTNHTVKFKQGRTGFMKKFEGCWKIEPLFVDKEACHPLDPCTLEKYDSCTNGTGRVGSSITLDQLIEPAMVPPPPFSWYLRGITTRTTEMLVNDLIAETARLRGLANNAIDKQYVEGKCDTSRDHLTEECNDIKERWRQRRKTGRHGNSLRLTAQG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.204344 | 1.497119 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0327550 | RBH | 0.363519 | 0.0 | 2.482931 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g15835 | RBH | 0.222893 | 0.0 | 0.579518 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0327550 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005800 | RBH | 0.187230 | 1.786340 | 5.419861 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005870 | RBH | 0.280475 | 1.127859 | 2.808611 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0006010 | RBH | 0.663511 | 0.000000 | 5.320645 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005890 | RBH | 0.047862 | 0.205843 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006070 | RBH | 1.425236 | 0.000000 | 11.426399 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0171400 | RBH | 6.2774065 | 11.9017745 | 8.087226 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006230 | RBH | 0.198094 | 0.198130 | 0.834249 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0149000 | RBH | 1.453213 | 4.887096 | 6.527761 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0006010 | RBH | 0.062713 | 0.183965 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005890 | RBH | 0.323459 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005860 | RBH | 1.265363 | 8.596660 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0005740 | RBH | 0.470818 | 0.0 | 0.579257 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006140 | RBH | 0.342554 | 2.927908 | 0.579819 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0006010 | RBH | 0.846771 | 28.166273 | 3.548251 |
