Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_09g0004120 | OGI:09020040 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr09:7240761-7242496 | ||||||||
| Gene Symbol | SUB1C, Sub1C, OsERF#073, OsERF073, ERF073, OsERF73, ERF73, AP2/EREBP#122, AP2/EREBP122 | ||||||||||
| DNA seq | gataacctctgcaaccaacactatacaattacttttcatattgttcgatccatgggacatatgtatgcaaattaccttattggggtccagtgaaaggAaaaaaaaaagaaatgctgatttattcctgcaaggcaaagctaatttgccaaaactttgcttaaccccacaatgtggtgccttgattatcattacaaaggtcatcagagttcaattcccattgacaagttggggtcatctctgtgcgtcctaattgcatcccccaaaattgttccccacctttggaaaaagctaattaagctggcggcccttgtttgacaagattattaggcgagtcgcatgtcaaggttgcaaagacgtgccgtttatgttgtcctgtcaaaagggaaagaaaaatgtaaaatcatgatgagtaacatagagaaaacaagaaaaaaatagtagtaactttatttaatactgcacgtaaatgctagaaatggcatgaacacacagaattcgactgatcctctatgatctagatcattcaaaagtgcaaattttttttactaaaactttcatggctaatgccacatgctataactaattctggatttcttttttactcccatctaattaaatggaacattcgagaacttgtttagaaagtgttttgtagaagaaaaaaagaaattaagtacgcgtagcagtgcccttcaaaagttgctgaatttctttcggtgattgaacagttgaaagcaccgaaatggtaaaattgtgcaataattaccattgcaatccttgttaaatcctatttatcttactggatttgttgttaattttgtttcatgaaattgttaaaaacttttagacttgcttgggtgtggatttaattacctgaatctgctctgttgttcgttagctccagaagcgcatgtcgccggtggtcatgtcgaaggcggcgaggaggctgtccatcaggtcgtcggagcagcactcgatgagtatgcgcgagtcgctggagtcctccgtggtcgtcggcggcgtcgtcgaggggctcctctccgccgctggcttctccggcggcggcggcggcggcggcgtgggcagcgatggggggaagttggtcttggcgttgccgccgtagatgcggcgaacctcgtcgtcgtaggcgcgcgcggcgccctcggcggtgtcgaaggtgccgagccagacgcggatgcccttgacggggtcgcggatctccgacgcccacctcccccacggccgctgccggatgccgcggtacgggtagctccgcttctccctccgccaccgccgccgccgctcgccgtcgtcgtcgtcggctcgtcgtcgtccgccgcttgcgccaccgccgaccgtcgacgccaccacctcgtggccgtggacgcacttgtcactaccacggatcaacggcgcaacaacgacatgctgaccgtcgtggtcgtcgtcgtcgtcgtcgtggtcgcgggagaggaactcgcggaaggcggcctcccagtcctcgtcgacggcgagcttcctcctgctgcgccgcgccttgtgatgcctcgccggcgacgaggacgacgaggaggaggaggaggaggagacgcggcggcgcatggtgtcgtgtcttgttcgatcgattcgattggtgggttgtgatgctgatgcttgggggttgtgggtggaagagagtagctaagctagcggcgtgcatttaaactagcgagaaacttggaaattttgccgtcatg
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| CDS seq | atgcgccgccgcgtctcctcctcctcctcctcctcgtcgtcctcgtcgccggcgaggcatcacaaggcgcggcgcagcaggaggaagctcgccgtcgacgaggactgggaggccgccttccgcgagttcctctcccgcgaccacgacgacgacgacgacgaccacgacggtcagcatgtcgttgttgcgccgttgatccgtggtagtgacaagtgcgtccacggccacgaggtggtggcgtcgacggtcggcggtggcgcaagcggcggacgacgacgagccgacgacgacgacggcgagcggcggcggcggtggcggagggagaagcggagctacccgtaccgcggcatccggcagcggccgtgggggaggtgggcgtcggagatccgcgaccccgtcaagggcatccgcgtctggctcggcaccttcgacaccgccgagggcgccgcgcgcgcctacgacgacgaggttcgccgcatctacggcggcaacgccaagaccaacttccccccatcgctgcccacgccgccgccgccgccgccgccggagaagccagcggcggagaggagcccctcgacgacgccgccgacgaccacggaggactccagcgactcgcgcatactcatcgagtgctgctccgacgacctgatggacagcctcctcgccgccttcgacatgaccaccggcgacatgcgcttctggagctaa
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| Protein seq | MRRRVSSSSSSSSSSSPARHHKARRSRRKLAVDEDWEAAFREFLSRDHDDDDDDHDGQHVVVAPLIRGSDKCVHGHEVVASTVGGGASGGRRRADDDDGERRRRWRREKRSYPYRGIRQRPWGRWASEIRDPVKGIRVWLGTFDTAEGAARAYDDEVRRIYGGNAKTNFPPSLPTPPPPPPPEKPAAERSPSTTPPTTTEDSSDSRILIECCSDDLMDSLLAAFDMTTGDMRFWS |
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| Function | Ethylene-responsive transcription factor ERF073 [UniProtKB/Swiss-Prot:Q8H0T5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_09g0004120 | OsLaMu_09g0004120.01 | Chr09 | 7240761 | 7242496 | - | NAM | ||
| CDS seq | atgcgccgccgcgtctcctcctcctcctcctcctcgtcgtcctcgtcgccggcgaggcatcacaaggcgcggcgcagcaggaggaagctcgccgtcgacgaggactgggaggccgccttccgcgagttcctctcccgcgaccacgacgacgacgacgacgaccacgacggtcagcatgtcgttgttgcgccgttgatccgtggtagtgacaagtgcgtccacggccacgaggtggtggcgtcgacggtcggcggtggcgcaagcggcggacgacgacgagccgacgacgacgacggcgagcggcggcggcggtggcggagggagaagcggagctacccgtaccgcggcatccggcagcggccgtgggggaggtgggcgtcggagatccgcgaccccgtcaagggcatccgcgtctggctcggcaccttcgacaccgccgagggcgccgcgcgcgcctacgacgacgaggttcgccgcatctacggcggcaacgccaagaccaacttccccccatcgctgcccacgccgccgccgccgccgccgccggagaagccagcggcggagaggagcccctcgacgacgccgccgacgaccacggaggactccagcgactcgcgcatactcatcgagtgctgctccgacgacctgatggacagcctcctcgccgccttcgacatgaccaccggcgacatgcgcttctggagctaa
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| Protein seq | MRRRVSSSSSSSSSSSPARHHKARRSRRKLAVDEDWEAAFREFLSRDHDDDDDDHDGQHVVVAPLIRGSDKCVHGHEVVASTVGGGASGGRRRADDDDGERRRRWRREKRSYPYRGIRQRPWGRWASEIRDPVKGIRVWLGTFDTAEGAARAYDDEVRRIYGGNAKTNFPPSLPTPPPPPPPEKPAAERSPSTTPPTTTEDSSDSRILIECCSDDLMDSLLAAFDMTTGDMRFWS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.286800 | 5.614041 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0286600 | RBH | 1.646801 | 1.150135 | 4.107193 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g11460 | RBH | 0.957916 | 0.653973 | 0.881472 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0286600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0004100 | RBH | 1.165170 | 8.554416 | 3.286858 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0004140 | RBH | 0.0 | 0.000000 | 3.483287 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0004170 | RBH | 2.261825 | 3.553356 | 9.693797 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0004050 | RBH | 0.000000 | 0.312384 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004200 | RBH | 2.837386 | 8.067976 | 18.831957 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0112600 | RBH | 7.063712 | 29.356713 | 3.3310465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0004210 | RBH | 0.078722 | 0.566236 | 1.175649 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0106500 | RBH | 5.279323 | 50.9781265 | 1.411001 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0004170 | RBH | 0.135253 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004160 | RBH | 0.299299 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0004180 | RBH | 0.0 | 12.813448 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004080 | RBH | 0.529380 | 0.0 | 2.203465 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G004270 | RBH | 0.364494 | 1.725033 | 3.375439 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004160 | RBH | 0.000000 | 36.616142 | 8.151715 |
