Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_08g0020920 | OGI:08072160 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr08:26402221-26403689 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acttctatacggagatcgtcgtcgatcggcaaaccgaggtgaagccgacgaaatggagagcgaggtgtgttggctgctatgcgcagcgctcgccgccgcgatggcttgctactacctcaccggcacgatgcgccgccgatcgcggcggctgcctCctggcccgacgccgctcccggtgatcggcaacgtgctcagcctgcgcggcaacatgcaccacgctctggcgcgcctcgccggcgagcacggccccgtgatggcgctgaagctgggcctcgtcaccaccgtggtcgtctcgtcggccggcgcggcgagggaggcgttcaccaagcacgaccggcgcctcgcggcgcgcgcggtgccggacactacccgccgcgcgcgggttcgccagccggtccatgatatggctgccgagctccgacccgcgctggaagacgctgcgcggcgtggcggccacccacgtcttctccccgcggagcctcgccgcggcgcgcggcgtccgggagcgcaaggtgcgggacatcgtcggccacctcgccgggcacgccggggaggtggtcgacgtcggcaaggtcgtgtacggtggcgtgctcaacctccgccggctcgacctgcagggatggcgtcgctgggcggagaagcgctacgacaaggtgttcggcatcttcgacagcgtaatcaacagccgcttggccgacgcctcgaccggaaagcacgccgacgccggcgcaggcgacttcctggactccctcctcgacctcatgtccgccggcacgatcgctcgcgacgacgtgacaagcataatgtacgacttgttcggcgccgggaccgacacgatcgccatcacggtggagtgggcgatggcggaactgctccgcaacccgagcgtaatggccaaggcgcgcgccgagatgaaccacgtcctcgccggcaaggtgaaagccacggagatggaggagaacgacgtagagaagctgccgtacctccaggccgtggtgaaggaggtgatgcgcctgcacccggcggcgccgatcctcgtgccgcaccgggcggaggaggacgacgcggagatcgggggctacgccgtgcccaagggctcgacggtaatcttcaacgtgtgggcgatcatgcgtgatccggtggcgtgggagaggcccgaggagttcatgccagagaggttcttggacatggcggaggaggtggatttcaggggaaaagaccacaagttcatgccgttcgggaccggaaggaggctgtgcccggggttgtcgatggcaaagcgcgtcgtgccattcattttggcgtcgctgcttcacgcgttcgagtggaggctccctgctggtgtgacagcggaggctttggatcttagcgagaagtttactactgtcaatgttcttgttactccaattaaggccatccccatacttgcctctgatcaaatttaagtgaaattgttgcaacttaatttg
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| CDS seq | atggagagcgaggtgtgttggctgctatgcgcagcgctcgccgccgcgatggcttgctactacctcaccggcacgatgcgccgccgatcgcggcggctgcctCctggcccgacgccgctcccggtgatcggcaacgtgctcagcctgcgcggcaacatgcaccacgctctggcgcgcctcgccggcgagcacggccccgtgatggcgctgaagctgggcctcgtcaccaccgtggtcgtctcgtcggccggcgcggcgagggaggcgttcaccaagcacgaccggcgcctcgcggcgcgcgcggtgccggacactacccgccgcgcgcgggttcgccagccgacgctgcgcggcgtggcggccacccacgtcttctccccgcggagcctcgccgcggcgcgcggcgtccgggagcgcaaggtgcgggacatcgtcggccacctcgccgggcacgccggggaggtggtcgacgtcggcaaggtcgtgtacggtggcgtgctcaacctccgccggctcgacctgcagggatggcgtcgctgggcggagaagcgctacgacaaggtgttcggcatcttcgacagcgtaatcaacagccgcttggccgacgcctcgaccggaaagcacgccgacgccggcgcaggcgacttcctggactccctcctcgacctcatgtccgccggcacgatcgctcgcgacgacgtgacaagcataatgtacgacttgttcggcgccgggaccgacacgatcgccatcacggtggagtgggcgatggcggaactgctccgcaacccgagcgtaatggccaaggcgcgcgccgagatgaaccacgtcctcgccggcaaggtgaaagccacggagatggaggagaacgacgtagagaagctgccgtacctccaggccgtggtgaaggaggtgatgcgcctgcacccggcggcgccgatcctcgtgccgcaccgggcggaggaggacgacgcggagatcgggggctacgccgtgcccaagggctcgacggtaatcttcaacgtgtgggcgatcatgcgtgatccggtggcgtgggagaggcccgaggagttcatgccagagaggttcttggacatggcggaggaggtggatttcaggggaaaagaccacaagttcatgccgttcgggaccggaaggaggctgtgcccggggttgtcgatggcaaagcgcgtcgtgccattcattttggcgtcgctgcttcacgcgttcgagtggaggctccctgctggtgtgacagcggaggctttggatcttagcgagaagtttactactgtcaatgttcttgttactccaattaaggccatccccatacttgcctctgatcaaatttaa
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| Protein seq | MESEVCWLLCAALAAAMACYYLTGTMRRRSRRLPPGPTPLPVIGNVLSLRGNMHHALARLAGEHGPVMALKLGLVTTVVVSSAGAAREAFTKHDRRLAARAVPDTTRRARVRQPTLRGVAATHVFSPRSLAAARGVRERKVRDIVGHLAGHAGEVVDVGKVVYGGVLNLRRLDLQGWRRWAEKRYDKVFGIFDSVINSRLADASTGKHADAGAGDFLDSLLDLMSAGTIARDDVTSIMYDLFGAGTDTIAITVEWAMAELLRNPSVMAKARAEMNHVLAGKVKATEMEENDVEKLPYLQAVVKEVMRLHPAAPILVPHRAEEDDAEIGGYAVPKGSTVIFNVWAIMRDPVAWERPEEFMPERFLDMAEEVDFRGKDHKFMPFGTGRRLCPGLSMAKRVVPFILASLLHAFEWRLPAGVTAEALDLSEKFTTVNVLVTPIKAIPILASDQI |
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| Function | Cytochrome P450 76M5 [UniProtKB/Swiss-Prot:Q6YTF5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_08g0020920 | OsLaMu_08g0020920.01 | Chr08 | 26402273 | 26403665 | + | NAM | ||
| CDS seq | atggagagcgaggtgtgttggctgctatgcgcagcgctcgccgccgcgatggcttgctactacctcaccggcacgatgcgccgccgatcgcggcggctgcctCctggcccgacgccgctcccggtgatcggcaacgtgctcagcctgcgcggcaacatgcaccacgctctggcgcgcctcgccggcgagcacggccccgtgatggcgctgaagctgggcctcgtcaccaccgtggtcgtctcgtcggccggcgcggcgagggaggcgttcaccaagcacgaccggcgcctcgcggcgcgcgcggtgccggacactacccgccgcgcgcgggttcgccagccgacgctgcgcggcgtggcggccacccacgtcttctccccgcggagcctcgccgcggcgcgcggcgtccgggagcgcaaggtgcgggacatcgtcggccacctcgccgggcacgccggggaggtggtcgacgtcggcaaggtcgtgtacggtggcgtgctcaacctccgccggctcgacctgcagggatggcgtcgctgggcggagaagcgctacgacaaggtgttcggcatcttcgacagcgtaatcaacagccgcttggccgacgcctcgaccggaaagcacgccgacgccggcgcaggcgacttcctggactccctcctcgacctcatgtccgccggcacgatcgctcgcgacgacgtgacaagcataatgtacgacttgttcggcgccgggaccgacacgatcgccatcacggtggagtgggcgatggcggaactgctccgcaacccgagcgtaatggccaaggcgcgcgccgagatgaaccacgtcctcgccggcaaggtgaaagccacggagatggaggagaacgacgtagagaagctgccgtacctccaggccgtggtgaaggaggtgatgcgcctgcacccggcggcgccgatcctcgtgccgcaccgggcggaggaggacgacgcggagatcgggggctacgccgtgcccaagggctcgacggtaatcttcaacgtgtgggcgatcatgcgtgatccggtggcgtgggagaggcccgaggagttcatgccagagaggttcttggacatggcggaggaggtggatttcaggggaaaagaccacaagttcatgccgttcgggaccggaaggaggctgtgcccggggttgtcgatggcaaagcgcgtcgtgccattcattttggcgtcgctgcttcacgcgttcgagtggaggctccctgctggtgtgacagcggaggctttggatcttagcgagaagtttactactgtcaatgttcttgttactccaattaaggccatccccatacttgcctctgatcaaatttaa
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| Protein seq | MESEVCWLLCAALAAAMACYYLTGTMRRRSRRLPPGPTPLPVIGNVLSLRGNMHHALARLAGEHGPVMALKLGLVTTVVVSSAGAAREAFTKHDRRLAARAVPDTTRRARVRQPTLRGVAATHVFSPRSLAAARGVRERKVRDIVGHLAGHAGEVVDVGKVVYGGVLNLRRLDLQGWRRWAEKRYDKVFGIFDSVINSRLADASTGKHADAGAGDFLDSLLDLMSAGTIARDDVTSIMYDLFGAGTDTIAITVEWAMAELLRNPSVMAKARAEMNHVLAGKVKATEMEENDVEKLPYLQAVVKEVMRLHPAAPILVPHRAEEDDAEIGGYAVPKGSTVIFNVWAIMRDPVAWERPEEFMPERFLDMAEEVDFRGKDHKFMPFGTGRRLCPGLSMAKRVVPFILASLLHAFEWRLPAGVTAEALDLSEKFTTVNVLVTPIKAIPILASDQI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_08g0020920 | OsLaMu_08g0020920.02 | Chr08 | 26402221 | 26403689 | + | IsoSeq | ||
| CDS seq | atgcgcagcgctcgccgccgcgatggcttgctactacctcaccggcacgatgcgccgccgatcgcggcggctgcctCctggcccgacgccgctcccggtgatcggcaacgtgctcagcctgcgcggcaacatgcaccacgctctggcgcgcctcgccggcgagcacggccccgtgatggcgctgaagctgggcctcgtcaccaccgtggtcgtctcgtcggccggcgcggcgagggaggcgttcaccaagcacgaccggcgcctcgcggcgcgcgcggtgccggacactacccgccgcgcgcgggttcgccagccggt
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| Protein seq | MRSARRRDGLLLPHRHDAPPIAAAASWPDAAPGDRQRAQPARQHAPRSGAPRRRARPRDGAEAGPRHHRGRLVGRRGEGGVHQARPAPRGARGAGHYPPRAGSPAG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.561538 | 2.272363 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0507702 | RBH | 1.621503 | 2.594035 | 1.928490 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g39694 | RBH | 0.969128 | 1.192450 | 0.311894 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0507702 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0021550 | RBH | 1.906741 | 1.341419 | 1.016141 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0021440 | RBH | 0.333544 | 0.672969 | 0.647873 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0021310 | RBH | 3.793960 | 1.331313 | 1.543179 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0021500 | RBH | 0.569002 | 0.078394 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0021370 | RBH | 7.642067 | 0.000000 | 5.915627 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0400800 | RBH | 7.9860395 | 2.5907995 | 0.52216 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0021220 | SBH | 0.417651 | 0.088863 | 0.272667 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0420900 | RBH | 2.765821 | 2.5836545 | 0.51451 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0020550 | SBH | 0.934991 | 0.072760 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0020880 | RBH | 1.006850 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0020710 | RBH | 5.306050 | 3.951339 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0021560 | RBH | 0.447466 | 0.044450 | 0.135543 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0012050 | SBH | 0.0 | 8.995354 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G021070 | RBH | 0.578178 | 0.0 | 0.536983 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0021250 | RBH | 1.448649 | 0.000000 | 2.178874 |
