Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_08g0017130 | OGI:08062940 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr08:22683564-22690942 | ||||||||
| Gene Symbol | CCR20, OS-CCR, OsCCR, CCR, OsCCR20, OsCCR14, CCR14 | ||||||||||
| DNA seq | cacaacctgctgtcttggtagcaaattctgcacaaatcagttgtgaacatagagaacttcatagAaatacttattcggtcactctggtgcacatgtaacaacaacaggggtgtattacagggcttcagaccagacaaaccagcgaacactactactttggttttacagcacggtaaacactaacacgatatggacatttttcctgctcttttgctctgctgttttcctcatgctcggatggcaatcccgccctggacctcgccggcctcctcctccgtcttctcggcggcgagcaccggcaggtggcccttctcctggaggcacttcaccgtctcgtacagcgactggctcgccggccggaactccagccccaggtcccggagcttctggttcgacatcttgtacggctgcttcctggggttcttctcgtcggagcacctgatggcaacacaggatcggtaacagttcagaggtaatgcacgaaaattttgtttcttttttctcgcattatcttgtgatccgtaatggttggccatacaattacgattcataatgaaaaggaacattaacatatacctatttacataacaaatcctatggcaggtcgcaaattgggggaattcgattaactagAaaaattatactacctccgttttttaatagatgacgccgttgactttttctcacatgtttgaccattcgtcttattcaaaaattttatgcaaatgtataagatataaatcacacttaaagtactatgagtgataaaacaacccataacaaaataaattataattatgtaaattttttaaataagacaatggtcaaacatgtgaaaaaaagttaacggcgtcatttattaaaaaatggagggagtatatgggatttaattcaggtgtaaacacgattggcttgacttgtgaagagcttgagattccttggtctccttggacccaattaaagcatccccagttcctgacctgacatcatgctacgtattggtgacccttgaaggtagtataagaggtttggtaagattaccacatcgagttagactgtttattcacgtacatgtagtcaggcatggtatctttgaaacaatcatgtggacaattcaggatcttgaataaatatgagccaaattcagcaaggtttttacgggatataccagttgaaaagtaatattagcaagtggggtgggtgctcttagtccaaccccgctgtaacgacgttttgacaaaagcaaagctgaatattcctgcgttttggttgcttgtcaggttgtgcattgaaatcaggctattccgattgattttgtactcctagatgtcaatatttatttcttgtttgcgtatttctgagtgaagcttcctcttgttttagaaaaaaggagttaacatactcaagcatgacgtaatttctccttgattaatactattatatcactagctgagtcgagatactagaaagaagtcagagcaaatgattgcagaGggattgtcatgctttctcccaagtaaccctttgtgtgtggctaacaaacaatatatgattaggtgagacccattaggactcaagagctgcatagacactgctcaccagacgtctaaggcagggcttaactaaagcaataattttttttctgttcataaacaaacagtttaaggaaaaaaaattctctgagaaaagaaccaagaaaaattcctagaaaattccactattccgacctaccccttcctaaatgtccaagattggtaggacttcttcccacaagcagctaattcccaaagtcaagaaaggtttgcatttttgtatgaggacttagcatttgcatcatctacgtactctttagttataacgccttaaatactaacaattatcagcatttccatcttatgacgttcattagacaactaatccttgtagcagttggcggacactaaaaccatttccaaaatgatgtacgatcgcaacatgcaaactaaaaactaacacttcaggactctgaagtcatgcgtgcataggcgatgacatgacactctcaaaaggttattagtagtacccagccgtacgtgtgatttgccagcgacgacaaaatgcagagccacagaaacaaacgaacaatctgacacgtacgatgcggaccaacttggatcgcaacgcgacaccgccacactcaattttcagaaaacaaacgctctcttgatgctacgcatttctacccgatcgatcgtgatggtgatctcgatgatgctgatctccatcgatcatcgctgatgcgatcgagaggaaggagacagagacagagtagaagattagcagagggtttggttgtggcttacaggggaatatatctcaaccctctcagtctcacaccaactttggtcgacatggacgtgtgcagattttggttgtatttgtgtggcacaagttgcatggaaaatcgatcaacttttgccaccaacacaaatctctcgatctctggatctcatgtagatgatcacgatgttgtttgttcatatgtgtatgtaacctagtgcgatgaacttgcttagaattactttgaggccttaatttgagtgtggtgttttactttgagtaaaaactcaagctagctagcgtcagaccggactgaaacggagttggttcacctgaacctgagctgatgctgcaattggtaggcaagtcttatccatccttacctaccaatcccaccaaattaattactagcagctgctacctaattagtcattagttaatggctaaacacccctttcactggagattagagaataaataatgaactaattaagcaaacatgaaactcataatcaatttagactctgtttctcgtgaccacagacgcaccaactacttctataactatagttaaaaaactagaatattagggaaggacctaatatcaaataattaggaagggtgaggctttgaacccaggtcgtctagcccaccaccttgtggagctagccagaagacccctaggcatttctcacttctataactatagttaacaacacagcgtacgttaatgccgacaattaagagaataccagtacgtggtttgcatgatgtggtgggggtgtagtactaatgacgtgattaattaggagaagtcgcaactcctactaagggagtaagggcatgttcgaaaagcttaagattctgagaagcagctgattggtatagcttctaacttctagttcattttctggattcttaaactatagcttcttaaaatctagacaaaaaactggactgtttaaagaagtttctaattctgagagaaacagcaacagctagaagctccctcaaacataccctaatacggggttaaattaacgagtgatcaactatagttaacagcacacagtaaatgctgatactgaagagagtagttagcatgatggtggtaatgtagtgatgacgtgattaggagaattaattaattaagaagtacttcctccgttttatattataagactttctagtattgactacattcatatattcccttcgtactcgcaaagaaagtcgtttaggacagcgacatggtctccaaaacacaactttgacttcttgtttctataaaaatatttattaaaaagtgatatatgtatacttttatgaaagtatttttcaagaaaaatctatttatataatttttatattttcaaacccaacaacttgagagttattcatgatttatattccgaaagtttgacttaaacattgtcctaaacgacttcctttatgagtacggagggagtatatgttaatgaatctatatatatatgtgtgactagattcattagcatctatatgaatgtggacaatgttagaaagtattataacctgaaacgaatgtagtaataaagatgaaattaattttacctggtggggacagggtactcggggaagagcttggcgaggatgcggacgacaccctcgcggtggaggacagactcggcgcagaggaagcggccggcggcggaaggggactcgaagacgaggaggtgggcggcggcgacgtcgcggacgtcgacgtaggcctggacggcgttggcgaacttgctggccgagccgtccaggtacttgaggatgtgggcgacgctggcgttcaccgtcggctgcagcagcggcccgatcaccagcaccgggttcaccaccaccagctccacccctcgccgccgcgccgcctcccacgccgcctgctccgccaccgccttcccgtagcagtaccagttctgcaccatcatttcatatatttttttcattttcttttactttacaggattaagtattgcaaataattgttcgtagcttatgttgaagcgcaaagtcctgaaacctaagctacccttaagaagaaagaaacataatacaaacgtgttcacaacgagtccgtactcatccctacaaatgaatacacgtaaactctacctctgagtgtctctaaaaaaattgggtcagtatatccacaatggaagcacacatacccttacaaatgtacggtcactctatccttagaaatatttccgaaagattctggtggttgtatcttgactttgacgaaggttattgcaaagctattacaaatattaggtgaattaattaggacatgctgatggaatacgacgtgaaaaatcggtactaggttttttttctttcagagaagaattaattactctgtggggatccacgagaaaattatgcgggacgcggtacagttttacgtttgggagtcaagtttcggtttcatattacaaaatcacaagaaattaaattgggtttcgctttcgtatgcacgtgtgtttgatttatttccataattgcgacgatcgaggccagtatatacatatgttattcttttgcctgacgaaacatgccaatgtttttaatatttgtatgctaaattaaaacatgaaagatgtgttaccttcggcgtcgtacaatattaatttcttcacgcctaacatatattgctttgaaagatactccctccttctcaaagtgttcgacgccgttgatttttttaaacatgtttgatcgttcgtcttattcaaaaacttttatgaaatgtgtaaaactatatgtatacataaaaatatatttaacaataaattaaatgataggaaaagaattaataattacttaaattttttgaataagacgaacggtcaaacatgtttaaaaaaatcaacagcgtcaaacattttgggatggagggagtatatattgccggatcactcagctgtgatctgctttctaaggaaaaaagtacagtagctcttaaaaatagtttttcttatagttaaaaaagtactacttgaatttttcccgacggattgcgatgcaaaaagccaaaaactgtccacaaggtaaaccttttttccttccagaaactaacaaattagaggccaattactgggttcttgaaaatcgtgaccatgcatgcatgcgttcagctactactacaactgattaattaacggttgaccgttgactcatcggtaataaatgacgtgccggcgttcaattccagtggctgggtgcgttggacttctagttattgtaacctctacggtgcacatgtgtgtctgttggatcaactgtacgcttcgatgctgaatgcatgttcgaaaattccatataattaaccactaattaatagtaatttaactactaattaaccacaacaatcgtgagctacaaactatcttaaattcccaaaatttccaaaatagattcttatgttatactaatatatataaactaaataaaatataattaaatatattaaaattgccgtttccataaaaaaatagtgtggatatattgtaatggataaaataagtcgtacgtccaagctaatcatgttactacttcctagtccttcactgtaaggcagagaaaactccgaggtgtcacgctaagctacatggcgtgttattacgtgtgttcctatcatatcgatccggattggtcacatgctttacgtgagtaacacccaaacttaatctcaccatgtccttttgccggtgcacgtcgctagttaaaaagaaaaaaaaagaaaaaaaagaagcagcttttaaccttagtgctcacgtcgacacaggcaatcgatcgatgagcacctgtcttggttggctcaaaagccagacataataattcttttgagtcatggttggtagtactagctagctaggtagtggcatgtaataattcatatccatacaaagtttttttttctttttccattttctcagtgaaaagaaccaaagcaaaaaaggtaacaataacatgatgaagcaaaaggtatccaaggttaattagtacgtgcaattaagggcagagagagatcatcaagaaattagattagattttgcagatgcacctaccctggtttccttgcagtagtcaaggtcgctccagcaggactcgtcgacgacgacgtcgggcccgcggttggggtccatggtcaccgccccgatcgacgacgtgaacaccacccgccgcaccgtgccggcctccgccgccgcgtttatcacgtactccgtccccctcaccgccggctccaccatctgctcctgcaaaaagacacatgcaatgcgccactcgtgtcagtcgcaactaattaacgtacgccatgggcgcccatgatgaacagcgtgagaaaccgagaaaataatggtggtgtcgccgccgtgtcggccggcggcgaggcgaagtgaggtgaggttgtgtggttggacgtacggggtcgtcggtgacgggggaggcggtgtggaagacgccgtggcagccggcgacggcccggcagatggcgtcgtagtcgaggaggtcggccttgcagagcaccagccgctcgccggcgccgtcgagcgccttcaggtgcgcgttcttcgggtcatctgcacacgcaacgcaacacacaccatataactataagcctctagctaaaacgaacgagctgtagtagcttatggcgtccgtgtgtgtgcatgcctgggttcctgacggtgcccttgacagtgtagcccttctcaagcagcagcttcacgagccacgacgcgatgtacccggccgcgccggtcacgcacacggtctgcccgttccccggctgcaccaccgccgcggctgcgccgccggcgtcggcagcgacggcgccgtcgatcacggtcatcttgatgaacgaacgaaagatcgtacgttcaccacactacactcgaagcagttgctacctgctagttctaaagataggagagagagagagaaaagttacgattagtttttttttaagatcgatcgatcgggaatgagttggtaggttcgatttggtagctgggattcttctgggg
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| CDS seq | atgaccgtgatcgacggcgccgtcgctgccgacgccggcggcgcagccgcggcggtggtgcagccggggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaagggctacactgtcaagggcaccgtcaggaacccagatgacccgaagaacgcgcacctgaaggcgctcgacggcgccggcgagcggctggtgctctgcaaggccgacctcctcgactacgacgccatctgccgggccgtcgccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccccgagcagatggtggagccggcggtgagggggacggagtacgtgataaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcgatcggggcggtgaccatggaccccaaccgcgggcccgacgtcgtcgtcgacgagtcctgctggagcgaccttgactactgcaaggaaaccaggaactggtactgctacgggaaggcggtggcggagcaggcggcgtgggaggcggcgcggcggcgaggggtggagctggtggtggtgaacccggtgctggtgatcgggccgctgctgcagccgacggtgaacgccagcgtcgcccacatcctcaagtacctggacggctcggccagcaagttcgccaacgccgtccaggcctacgtcgacgtccgcgacgtcgccgccgcccacctcctcgtcttcgagtccccttccgccgccggccgcttcctctgcgccgagtctgtcctccaccgcgaggataatgcgagaaaaaagaaacaaaattttcgtgcattacctctgaactgttaccgatcctgtgttgccatcaggtgctccgacgagaagaaccccaggaagcagccgtacaagatgtcgaaccagaagctccgggacctggggctggagttccggccggcgagccagtcgctgtacgagacggtgaagtgcctccaggagaagggccacctgccggtgctcgccgccgagaagacggaggaggaggccggcgaggtccagggcgggattgccatccgagcatga
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| Protein seq | MTVIDGAVAADAGGAAAAVVQPGNGQTVCVTGAAGYIASWLVKLLLEKGYTVKGTVRNPDDPKNAHLKALDGAGERLVLCKADLLDYDAICRAVAGCHGVFHTASPVTDDPEQMVEPAVRGTEYVINAAAEAGTVRRVVFTSSIGAVTMDPNRGPDVVVDESCWSDLDYCKETRNWYCYGKAVAEQAAWEAARRRGVELVVVNPVLVIGPLLQPTVNASVAHILKYLDGSASKFANAVQAYVDVRDVAAAHLLVFESPSAAGRFLCAESVLHREDNARKKKQNFRALPLNCYRSCVAIRCSDEKNPRKQPYKMSNQKLRDLGLEFRPASQSLYETVKCLQEKGHLPVLAAEKTEEEAGEVQGGIAIRA |
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| Function | Cinnamoyl-CoA reductase 1 [UniProtKB/Swiss-Prot:Q9S9N9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_08g0017130 | OsLaMu_08g0017130.01 | Chr08 | 22683564 | 22690938 | - | NAM | ||
| CDS seq | atgaccgtgatcgacggcgccgtcgctgccgacgccggcggcgcagccgcggcggtggtgcagccggggaacgggcagaccgtgtgcgtgaccggcgcggccgggtacatcgcgtcgtggctcgtgaagctgctgcttgagaagggctacactgtcaagggcaccgtcaggaacccagatgacccgaagaacgcgcacctgaaggcgctcgacggcgccggcgagcggctggtgctctgcaaggccgacctcctcgactacgacgccatctgccgggccgtcgccggctgccacggcgtcttccacaccgcctcccccgtcaccgacgaccccgagcagatggtggagccggcggtgagggggacggagtacgtgataaacgcggcggcggaggccggcacggtgcggcgggtggtgttcacgtcgtcgatcggggcggtgaccatggaccccaaccgcgggcccgacgtcgtcgtcgacgagtcctgctggagcgaccttgactactgcaaggaaaccaggaactggtactgctacgggaaggcggtggcggagcaggcggcgtgggaggcggcgcggcggcgaggggtggagctggtggtggtgaacccggtgctggtgatcgggccgctgctgcagccgacggtgaacgccagcgtcgcccacatcctcaagtacctggacggctcggccagcaagttcgccaacgccgtccaggcctacgtcgacgtccgcgacgtcgccgccgcccacctcctcgtcttcgagtccccttccgccgccggccgcttcctctgcgccgagtctgtcctccaccgcgaggataatgcgagaaaaaagaaacaaaattttcgtgcattacctctgaactgttaccgatcctgtgttgccatcaggtgctccgacgagaagaaccccaggaagcagccgtacaagatgtcgaaccagaagctccgggacctggggctggagttccggccggcgagccagtcgctgtacgagacggtgaagtgcctccaggagaagggccacctgccggtgctcgccgccgagaagacggaggaggaggccggcgaggtccagggcgggattgccatccgagcatga
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| Protein seq | MTVIDGAVAADAGGAAAAVVQPGNGQTVCVTGAAGYIASWLVKLLLEKGYTVKGTVRNPDDPKNAHLKALDGAGERLVLCKADLLDYDAICRAVAGCHGVFHTASPVTDDPEQMVEPAVRGTEYVINAAAEAGTVRRVVFTSSIGAVTMDPNRGPDVVVDESCWSDLDYCKETRNWYCYGKAVAEQAAWEAARRRGVELVVVNPVLVIGPLLQPTVNASVAHILKYLDGSASKFANAVQAYVDVRDVAAAHLLVFESPSAAGRFLCAESVLHREDNARKKKQNFRALPLNCYRSCVAIRCSDEKNPRKQPYKMSNQKLRDLGLEFRPASQSLYETVKCLQEKGHLPVLAAEKTEEEAGEVQGGIAIRA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_08g0017130 | OsLaMu_08g0017130.02 | Chr08 | 22683608 | 22690942 | - | IsoSeq | ||
| CDS seq | cccagaagaatcccagctaccaaatcgaacctaccaactcattcccgatcgatcgatcttaaaaaaaaactaatcgtaacttttctctctctctctcctatctttagaactagc |
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| Protein seq | PRRIPATKSNLPTHSRSIDLKKKLIVTFLSLSPIFRTS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 21.576300 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0441500 | RBH | 2.689341 | 2.283039 | 16.156410 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g34280 | RBH | 1.700797 | 1.230779 | 3.851701 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0441500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0017610 | RBH | 0.0 | 64.269119 | 15.388780 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0017460 | RBH | 0.245157 | 10.245679 | 4.515017 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0017410 | RBH | 0.433333 | 73.088371 | 10.940857 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0017700 | RBH | 0.000000 | 1.472755 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0017550 | RBH | 2.453776 | 69.225052 | 52.030563 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0342100 | RBH | 10.617169 | 11.0307525 | 7.5522785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0017450 | RBH | 0.0 | 3.913974 | 2.627117 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0362200 | RBH | 13.439635 | 4.893066 | 6.547949 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0016820 | RBH | 0.0 | 0.217721 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0017090 | RBH | 0.427698 | 9.040466 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0016900 | RBH | 11.895418 | 183.940414 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0017720 | RBH | 0.224673 | 3.423965 | 2.953155 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0010350 | RBH | 1.009762 | 1.487840 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G017300 | RBH | 0.0 | 0.591375 | 5.043602 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0017360 | RBH | 0.0 | 32.794144 | 13.957558 |
