Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_08g0012680 | OGI:08046840 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr08:17172156-17174643 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agtgtacaactggctttattaaatattttacaatattagacacggagaaaaatgtactattcaacattcatatgtagtacaccgaccatgactgcctgtctcttttataaatagaaaatgaagcataaactagaagaCccgatccatccaaaactggtttatatagaaacagaagtatcttcgactagcacaatttggaggataataaagccacctcacaattcacccaacacaagctctgacttcatggatattgtcacacatgacatgagcgtgcccacgttccgaaccaTttcagatcatcagcctgtcagcatttcagcagcaggcccaaagcatccccaagAaaatcaccttggcggctgcacccaggaaagctcaatttttatcgctgaccagtgaCcactgctctcttctaatatgatccaccacagttaatcttcagaatcaatttctCccatcagatgcttccatatccataTttttcgatatatgctgcacctccggacattcTtccaacatcaccgatgacactggcggattgaggaattttgcagaaccctggacgaaatccgatcatcggtacggtatcatccgacaccgacgacttggcgtttccacctcttgccatgccacggcgagccaagtgctggacattgagtcgtgcactgcctattgagagtttagaatagTttcccgatttctagttcccgggttttacgtaactaagaacggagtaaactgcctggatcacggtgcagacgagcccaatggtggccgccacgaggccggcggtgagccacgggttgagaaagtacttctgcctcagcgacgccatccaccgccgcggcctactccggaaccgccggtcgagcacctggcacaccggcctcaggtagttctggtcggcctcgtcgaagtcgaacacggcgcccttgcacaggttcgcgaagaggcccgcgacctcgccgtcgttgcccaggccgtgcacgatcacgccgcgccgcgacagcagctccacgtccctcgccgtgcacgccagctgcgacatgaacacgcagtacgccgtcacgtggctCcccgccgccgacgggttgctctgctccagcgccatcaggttccggagcagccgccacgtctcgccgtcgatgctcagccggggcacctgcagcgcgccgccgcgccggctcaccttcacgtcgaggatgctgcgcgcgccgccgccgctgctgagcgggcggcgcttgaacgtcacgccggcgtagtggtactccgtcgccgtgcgccaccggcccacggaccttccgccgcgactgaccttgccggaagcgagcacggtaggcgtgaagtgcatgtgcagcaggtggagaaggttcgccggctccggccgcagcgccggcggcgccactatcgtcggcgtcgcgaccgagtactccgtCcaactcaacaggtcgtgcgcgtacctcgcgatggcgtccaacaccggagtttcgccgtcgaggaacgtcagctgGTggaccttgtcgacgacgaagaacgggatctggttctcggcaaggtagagcacgtcgcggaccaccgcgacggccatctgctggtcgtctgcggccgctctcctctcctcggtcggcacgacgcggtgCcccgcgtgcacgacgccgttagccacggccaCCTcctccgccgccgccgccgccggctgcggcggcgccgcggtgcgcggcgtgagcacgtcgccgaagcggacgaggatgtagcaggcgtcgagcagcagcatgcgcacgaactccctgcttgggatgtcgaacgaatggacgtagCACcTcctcacgctgtgCtcgaggtgcgccagctcggagaggtagtcctcgagcgtcatcggcgcggtggagctcgccgccgccgCcgagaggacgtcgccgaggtacttcaccttgatggCctctccggcgaggtcggcggcgcggtggtacggcccgatggagacgtactgcggcacgtactcgtgcgggtcgtggatgcgggtggactcaCcaaccttgtcgacgatgatgcacggcggaggcgcggcgccgccgacgacccgcgccgtcgacgacttgaagctggagagttcgaccctcagttctttggccaatgaagggatgtcaatcacacagctatctgcaatcgattagcacaaaaaagtcctactcaattagcacaaataaaccatcaaattatgctcaatttcaaatttctgagctgatctaagaaaggatcttgttggcacctgttttcatctccaactctgcaacgcaacgagtaggatcgccccccatcgtttcttcctcctctgcggctcagtccagcaggaagcagaggagcagctgccctgtcactaacaactccattagtggccaagcgagcataaaattctccagaggcgtttttatccaattggccgtaagatcacatcgacgaggagattagattaatccacgcttac
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| CDS seq | atggggggcgatcctactcgttgcgttgcagagttggagatgaaaacagatagctgtgtgattgacatcccttcattggccaaagaactgagggtcgaactctccagcttcaagtcgtcgacggcgcgggtcgtcggcggcgccgcgcctccgccgtgcatcatcgtcgacaaggttgGtgagtccacccgcatccacgacccgcacgagtacgtgccgcagtacgtctccatcgggccgtaccaccgcgccgccgacctcgccggagagGccatcaaggtgaagtacctcggcgacgtcctctcgGcggcggcggcgagctccaccgcgccgatgacgctcgaggactacctctccgagctggcgcacctcgaGcacagcgtgaggAgGTGctacgtccattcgttcgacatcccaagcagggagttcgtgcgcatgctgctgctcgacgcctgctacatcctcgtccgcttcggcgacgtgctcacgccgcgcaccgcggcgccgccgcagccggcggcggcggcggcggaggAGGtggccgtggctaacggcgtcgtgcacgcgggGcaccgcgtcgtgccgaccgaggagaggagagcggccgcagacgaccagcagatggccgtcgcggtggtccgcgacgtgctctaccttgccgagaaccagatcccgttcttcgtcgtcgacaaggtccACcagctgacgttcctcgacggcgaaactccggtgttggacgccatcgcgaggtacgcgcacgacctgttgagttgGacggagtactcggtcgcgacgccgacgatagtggcgccgccggcgctgcggccggagccggcgaaccttctccacctgctgcacatgcacttcacgcctaccgtgctcgcttccggcaaggtcagtcgcggcggaaggtccgtgggccggtggcgcacggcgacggagtaccactacgccggcgtgacgttcaagcgccgcccgctcagcagcggcggcggcgcgcgcagcatcctcgacgtgaaggtgagccggcgcggcggcgcgctgcaggtgccccggctgagcatcgacggcgagacgtggcggctgctccggaacctgatggcgctggagcagagcaacccgtcggcggcgggGagccacgtgacggcgtactgcgtgttcatgtcgcagctggcgtgcacggcgagggacgtggagctgctgtcgcggcgcggcgtgatcgtgcacggcctgggcaacgacggcgaggtcgcgggcctcttcgcgaacctgtgcaagggcgccgtgttcgacttcgacgaggccgaccagaactacctgaggccggtgtgccaggtgctcgaccggcggttccggagtaggccgcggcggtggatggcgtcgctgaggcagaagtactttctcaacccgtggctcaccgccggcctcgtggcggccaccattgggctcgtctgcaccgtgatccaggcagtttactccgttcttagttacgtaaaacccgggaactag
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| Protein seq | MGGDPTRCVAELEMKTDSCVIDIPSLAKELRVELSSFKSSTARVVGGAAPPPCIIVDKVGESTRIHDPHEYVPQYVSIGPYHRAADLAGEAIKVKYLGDVLSAAAASSTAPMTLEDYLSELAHLEHSVRRCYVHSFDIPSREFVRMLLLDACYILVRFGDVLTPRTAAPPQPAAAAAEEVAVANGVVHAGHRVVPTEERRAAADDQQMAVAVVRDVLYLAENQIPFFVVDKVHQLTFLDGETPVLDAIARYAHDLLSWTEYSVATPTIVAPPALRPEPANLLHLLHMHFTPTVLASGKVSRGGRSVGRWRTATEYHYAGVTFKRRPLSSGGGARSILDVKVSRRGGALQVPRLSIDGETWRLLRNLMALEQSNPSAAGSHVTAYCVFMSQLACTARDVELLSRRGVIVHGLGNDGEVAGLFANLCKGAVFDFDEADQNYLRPVCQVLDRRFRSRPRRWMASLRQKYFLNPWLTAGLVAATIGLVCTVIQAVYSVLSYVKPGN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_08g0012680 | OsLaMu_08g0012680.01 | Chr08 | 17172156 | 17174643 | - | NAM | ||
| CDS seq | atggggggcgatcctactcgttgcgttgcagagttggagatgaaaacagatagctgtgtgattgacatcccttcattggccaaagaactgagggtcgaactctccagcttcaagtcgtcgacggcgcgggtcgtcggcggcgccgcgcctccgccgtgcatcatcgtcgacaaggttgGtgagtccacccgcatccacgacccgcacgagtacgtgccgcagtacgtctccatcgggccgtaccaccgcgccgccgacctcgccggagagGccatcaaggtgaagtacctcggcgacgtcctctcgGcggcggcggcgagctccaccgcgccgatgacgctcgaggactacctctccgagctggcgcacctcgaGcacagcgtgaggAgGTGctacgtccattcgttcgacatcccaagcagggagttcgtgcgcatgctgctgctcgacgcctgctacatcctcgtccgcttcggcgacgtgctcacgccgcgcaccgcggcgccgccgcagccggcggcggcggcggcggaggAGGtggccgtggctaacggcgtcgtgcacgcgggGcaccgcgtcgtgccgaccgaggagaggagagcggccgcagacgaccagcagatggccgtcgcggtggtccgcgacgtgctctaccttgccgagaaccagatcccgttcttcgtcgtcgacaaggtccACcagctgacgttcctcgacggcgaaactccggtgttggacgccatcgcgaggtacgcgcacgacctgttgagttgGacggagtactcggtcgcgacgccgacgatagtggcgccgccggcgctgcggccggagccggcgaaccttctccacctgctgcacatgcacttcacgcctaccgtgctcgcttccggcaaggtcagtcgcggcggaaggtccgtgggccggtggcgcacggcgacggagtaccactacgccggcgtgacgttcaagcgccgcccgctcagcagcggcggcggcgcgcgcagcatcctcgacgtgaaggtgagccggcgcggcggcgcgctgcaggtgccccggctgagcatcgacggcgagacgtggcggctgctccggaacctgatggcgctggagcagagcaacccgtcggcggcgggGagccacgtgacggcgtactgcgtgttcatgtcgcagctggcgtgcacggcgagggacgtggagctgctgtcgcggcgcggcgtgatcgtgcacggcctgggcaacgacggcgaggtcgcgggcctcttcgcgaacctgtgcaagggcgccgtgttcgacttcgacgaggccgaccagaactacctgaggccggtgtgccaggtgctcgaccggcggttccggagtaggccgcggcggtggatggcgtcgctgaggcagaagtactttctcaacccgtggctcaccgccggcctcgtggcggccaccattgggctcgtctgcaccgtgatccaggcagtttactccgttcttagttacgtaaaacccgggaactag
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| Protein seq | MGGDPTRCVAELEMKTDSCVIDIPSLAKELRVELSSFKSSTARVVGGAAPPPCIIVDKVGESTRIHDPHEYVPQYVSIGPYHRAADLAGEAIKVKYLGDVLSAAAASSTAPMTLEDYLSELAHLEHSVRRCYVHSFDIPSREFVRMLLLDACYILVRFGDVLTPRTAAPPQPAAAAAEEVAVANGVVHAGHRVVPTEERRAAADDQQMAVAVVRDVLYLAENQIPFFVVDKVHQLTFLDGETPVLDAIARYAHDLLSWTEYSVATPTIVAPPALRPEPANLLHLLHMHFTPTVLASGKVSRGGRSVGRWRTATEYHYAGVTFKRRPLSSGGGARSILDVKVSRRGGALQVPRLSIDGETWRLLRNLMALEQSNPSAAGSHVTAYCVFMSQLACTARDVELLSRRGVIVHGLGNDGEVAGLFANLCKGAVFDFDEADQNYLRPVCQVLDRRFRSRPRRWMASLRQKYFLNPWLTAGLVAATIGLVCTVIQAVYSVLSYVKPGN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.049628 | 1.558927 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0356500 | RBH | 0.612958 | 0.316397 | 1.742840 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g26820 | RBH | 0.413642 | 0.210060 | 0.448766 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0356500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0013080 | RBH | 0.000000 | 4.006757 | 1.589066 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0013100 | RBH | 0.000000 | 0.0 | 0.402322 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0012950 | RBH | 0.240469 | 0.928962 | 2.998937 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013250 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0012900 | RBH | 0.430267 | 1.419280 | 4.376730 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0249500 | RBH | 0.0470635 | 4.587939 | 0.030623 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0012990 | RBH | 0.120411 | 0.134111 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0272600 | RBH | 1.882781 | 12.139252 | 0.421189 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0012580 | RBH | 0.0 | 0.200589 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0012680 | RBH | 0.0 | 4.436164 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0012560 | RBH | 0.0 | 2.659741 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0013370 | RBH | 0.000000 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0004900 | SBH | 0.0 | 1.441896 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G012770 | RBH | 0.065903 | 0.000000 | 0.298313 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0012850 | RBH | 0.398874 | 3.197704 | 2.639478 |
