Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_08g0011100 | OGI:08041480 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr08:14572028-14575780 | ||||||||
| Gene Symbol | OsSub55, SUB55 | ||||||||||
| DNA seq | atgcttttttttctttttttttctttttgttgttgttgttgttgttgttattatggccacaatgtttgggcgcagccctacatcgtgtatctgggatcacacccgtacggcccagatgcgtcggcggaggagcacgcccgtgcgacgcagtctcaccacgaccttctaggatcagttcttggcaggtaataaactcactcacctagattggtgataatcgctattacagactgtgtttctatgattcttctttctgttcttgattgatggaaacaaaaataaaatgttggactaatgcacggacgcacgcagtaagcaaaaataaaatgttggactaatgcacggacgcacgcagtaagcaattggccaaggacgcgatactctactcctacaccaagaacatcaacggcttcgcggcgcatctggaggaggaggtagcaacccagatcgcgagtaagaagagaacatctaaattgatcaagaaccgatgagtagaatatataggacaaattcgatggcacatcaacgaaaatgtttggagttgcagggcaccctgacgtggtgacggtgatggcgagcacgatgctgaagctgcacacgacgaggtcatgggacttcatggacatggagagggacggccagatcctcccggactccatctggaagcacggcaggttcggccaggacgtcatcatcgccaacctcgacagcggtacgcatcgctatctttatttatttatttattttttaaataatagaataaaactttcgacctttgcttcaaataaactacagtcacctattacaaaattctctcaaagagagcaaatacacaggcttattgccatcttaattttgatgcgtttttgggttcctcgagctcccatggttgattactaattaatctctgccgttaatggtgatcgaatcaaggtgtgtggccggagtccaacagcttcaccgacgaggaagtggtcggcgaggtgcccaagcgctggaagggctcctgctctgacaccgccaagtacggtgtctcctgcaacaagtgagtggctccatttctcggccgtctttgaattgcagaatttttttttctttacccacctcattaatagttcatcatatacaataaagacagatttggagtttcaaatcttacagaattttcaaccaataaatacaacctgtttaaaatgaaaataaaaaagagagagagaggaagaagcatgtcaaaatatcttaaatctaggggaaaaacagttgtaaaatctttttcttttgcattgtaaccgagtattattgttctataatcaagtgtaggtgctctataactgagtgtaactacaagtttagtctacaggaacccgaatcttgatcaaagattctatggatgaaaaatcgagctaaaaaatgtatcgtaagtgaaatattaaaacccgatagattatattaaagagagcatttttgactataagcagttagtcataccgatcaggggatagtgtttttacaataaacacttgtcgaatttaaatttatcatgacactataaaattcctgcatccgccggtggattcgttcatgtgagattttgcaggaagctgatcggcgccaggtacttcaacaaggacatgctgttgagcaacccgggcgcggtggacggcaactggtcgcgcgacacggaggggcacggcacgcacacgctgtccaccgccggcggccgcttcgtgcccagggccagcctcttcggctacgccaacggcacggccaagggcggcgcgccgcgggcgcgcgtcgcggcctacaaggtgtgctggtccggcgagtgcgccgccgccgacgtgctggcggggttcgaggccgccatccacgacggcgccgacgtcatctccgtctccttcggccaggacgcgccggtcgccaccgtcgcctccttcctccaggagcccgtcacgctcggctccctccacgccgccatgaatggcgtctccgtcgtctgctccgccggcaactccgggcccctcgaggacaccgtcgtcaacgccgcgccgtgggtcaccaccgtcgccgccagcaccgtcgaccgggacttccccaacgtcgtcacgctcggcaacaacgcgcacatgacggtaaggatcacctcgtcccacgccattgttaactatagctatatccatggacgaacacttgggacgacatggctcacggtgcaagcttgtctctcccaatgctgcgtgcgtcgcaggggatgagcttggagacgacgaccttgcactctacccagctctactcgatgatcaaagccagcgacgccgcgctcgcgagctctgaccccgccgtcgcgtacgtaccatcctttgaacacgtgaaattttctttctaatttgtgtgagatgatatgagatcgaattgaactgattcgtgtcaaaatcatggcaaaaaaatctgtatggtttttcaggtcgacttgcccaccaggcacgcttgacccggagaaggtgaagaacaagatcgtggtgtgcgtgcgtggcggcgacatcccaagggtgacgaagggcatgaccgtcctcaacgccggcggcaccgggatgatcctcgcgaacggcgagatggacggcgacgacatcgtcgccgacccgcacgtgctcccagccaccatgatcacctacagcgaggccatgtcgctgtacaagtacatggactcctccaagaaccccgtggcgaacatctcgccgtccaagacggaggtcggcgtgaagaactcgccgtcggtggcggccttctcgtcgcgggggccaagcgggacgctgccgtgcgtgctgaagccggacatcgcggccccgggcgtggacatcctggcggcgttcaccgagtacgtcagcccgacggaggtccccaacgacgagcggcggtcggagtacgccatcctgtccggcacgtccatggcgtgcccgcacatctccggcgtgatcgggctcctcaaggcggcgcgcccggagtggagccccgccgcgatgcgctccgcgatcatgaccacggcgcgcacccaggacaacaccggcgcgccgatgcgcgaccacgacgggagggaggcgacggcgttcgcgttcggcgccggcaacatccacccgaaccgcgccgtcgacccgggcctcgtctacgacctctccaaggaggactacttcgtcttcctctgctccatggggttcaactccagcgacctcgccaagctgagtgccggcaacttcacctgcccggagaaggtcccgccgatggaggacctcaactacccgtccatcgtggtgccggcgctgcggcacacgtcgacggtggcgcggcggctcaagtgcgtcggccggccggcgacgtaccgcgcgacgtggcgcgccccgtacggggtcaacatgacggtggagccggcggcgctggagttcggcaaggacggcgaggtgaaggagttcaaggtgacgttcaagtcggagaaggacaagctcggcaagggctacgtctttgggaggctcgtctggtcggatgggacccaccatgtcaggagccccgtcgtggtcaacgccttggactgaggcgccgagattcgtgcgcgcgctatcgatccaagacgggcgcagatcagggtttaggtgttcttttattatttattttttgattgagagggataatattatagtccattatagagtgagaggctagatctcttggttgttaataaggttggatattttttcggaattg
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| CDS seq | atgcttttttttctttttttttctttttgttgttgttgttgttgttgttattatggccacaatgtttgggcgcagccctacatcgtgtatctgggatcacacccgtacggcccagatgcgtcggcggaggagcacgcccgtgcgacgcagtctcaccacgaccttctaggatcagttcttggcagtaagcaattggccaaggacgcgatactctactcctacaccaagaacatcaacggcttcgcggcgcatctggaggaggaggtagcaacccagatcgcgaggcaccctgacgtggtgacggtgatggcgagcacgatgctgaagctgcacacgacgaggtcatgggacttcatggacatggagagggacggccagatcctcccggactccatctggaagcacggcagcttcaccgacgaggaagtggtcggcgaggtgcccaagcgctggaagggctcctgctctgacaccgccaagtacggtgtctcctgcaacaagaagctgatcggcgccaggtacttcaacaaggacatgctgttgagcaacccgggcgcggtggacggcaactggtcgcgcgacacggaggggcacggcacgcacacgctgtccaccgccggcggccgcttcgtgcccagggccagcctcttcggctacgccaacggcacggccaagggcggcgcgccgcgggcgcgcgtcgcggcctacaaggtgtgctggtccggcgagtgcgccgccgccgacgtgctggcggggttcgaggccgccatccacgacggcgccgacgtcatctccgtctccttcggccaggacgcgccggtcgccaccgtcgcctccttcctccaggagcccgtcacgctcggctccctccacgccgccatgaatggcgtctccgtcgtctgctccgccggcaactccgggcccctcgaggacaccgtcgtcaacgccgcgccgtgggtcaccaccgtcgccgccagcaccgtcgaccgggacttccccaacgtcgtcacgctcggcaacaacgcgcacatgacggggatgagcttggagacgacgaccttgcactctacccagctctactcgatgatcaaagccagcgacgccgcgctcgcgagctctgaccccgccgtcgcgtcgacttgcccaccaggcacgcttgacccggagaaggtgaagaacaagatcgtggtgtgcgtgcgtggcggcgacatcccaagggtgacgaagggcatgaccgtcctcaacgccggcggcaccgggatgatcctcgcgaacggcgagatggacggcgacgacatcgtcgccgacccgcacgtgctcccagccaccatgatcacctacagcgaggccatgtcgctgtacaagtacatggactcctccaagaaccccgtggcgaacatctcgccgtccaagacggaggtcggcgtgaagaactcgccgtcggtggcggccttctcgtcgcgggggccaagcgggacgctgccgtgcgtgctgaagccggacatcgcggccccgggcgtggacatcctggcggcgttcaccgagtacgtcagcccgacggaggtccccaacgacgagcggcggtcggagtacgccatcctgtccggcacgtccatggcgtgcccgcacatctccggcgtgatcgggctcctcaaggcggcgcgcccggagtggagccccgccgcgatgcgctccgcgatcatgaccacggcgcgcacccaggacaacaccggcgcgccgatgcgcgaccacgacgggagggaggcgacggcgttcgcgttcggcgccggcaacatccacccgaaccgcgccgtcgacccgggcctcgtctacgacctctccaaggaggactacttcgtcttcctctgctccatggggttcaactccagcgacctcgccaagctgagtgccggcaacttcacctgcccggagaaggtcccgccgatggaggacctcaactacccgtccatcgtggtgccggcgctgcggcacacgtcgacggtggcgcggcggctcaagtgcgtcggccggccggcgacgtaccgcgcgacgtggcgcgccccgtacggggtcaacatgacggtggagccggcggcgctggagttcggcaaggacggcgaggtgaaggagttcaaggtgacgttcaagtcggagaaggacaagctcggcaagggctacgtctttgggaggctcgtctggtcggatgggacccaccatgtcaggagccccgtcgtggtcaacgccttggactga
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| Protein seq | MLFFLFFSFCCCCCCCYYGHNVWAQPYIVYLGSHPYGPDASAEEHARATQSHHDLLGSVLGSKQLAKDAILYSYTKNINGFAAHLEEEVATQIARHPDVVTVMASTMLKLHTTRSWDFMDMERDGQILPDSIWKHGSFTDEEVVGEVPKRWKGSCSDTAKYGVSCNKKLIGARYFNKDMLLSNPGAVDGNWSRDTEGHGTHTLSTAGGRFVPRASLFGYANGTAKGGAPRARVAAYKVCWSGECAAADVLAGFEAAIHDGADVISVSFGQDAPVATVASFLQEPVTLGSLHAAMNGVSVVCSAGNSGPLEDTVVNAAPWVTTVAASTVDRDFPNVVTLGNNAHMTGMSLETTTLHSTQLYSMIKASDAALASSDPAVASTCPPGTLDPEKVKNKIVVCVRGGDIPRVTKGMTVLNAGGTGMILANGEMDGDDIVADPHVLPATMITYSEAMSLYKYMDSSKNPVANISPSKTEVGVKNSPSVAAFSSRGPSGTLPCVLKPDIAAPGVDILAAFTEYVSPTEVPNDERRSEYAILSGTSMACPHISGVIGLLKAARPEWSPAAMRSAIMTTARTQDNTGAPMRDHDGREATAFAFGAGNIHPNRAVDPGLVYDLSKEDYFVFLCSMGFNSSDLAKLSAGNFTCPEKVPPMEDLNYPSIVVPALRHTSTVARRLKCVGRPATYRATWRAPYGVNMTVEPAALEFGKDGEVKEFKVTFKSEKDKLGKGYVFGRLVWSDGTHHVRSPVVVNALD |
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| Function | Subtilisin-like protease SBT5.3 [UniProtKB/Swiss-Prot:Q9ZSP5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_08g0011100 | OsLaMu_08g0011100.01 | Chr08 | 14572028 | 14575780 | + | NAM | ||
| CDS seq | atgcttttttttctttttttttctttttgttgttgttgttgttgttgttattatggccacaatgtttgggcgcagccctacatcgtgtatctgggatcacacccgtacggcccagatgcgtcggcggaggagcacgcccgtgcgacgcagtctcaccacgaccttctaggatcagttcttggcagtaagcaattggccaaggacgcgatactctactcctacaccaagaacatcaacggcttcgcggcgcatctggaggaggaggtagcaacccagatcgcgaggcaccctgacgtggtgacggtgatggcgagcacgatgctgaagctgcacacgacgaggtcatgggacttcatggacatggagagggacggccagatcctcccggactccatctggaagcacggcagcttcaccgacgaggaagtggtcggcgaggtgcccaagcgctggaagggctcctgctctgacaccgccaagtacggtgtctcctgcaacaagaagctgatcggcgccaggtacttcaacaaggacatgctgttgagcaacccgggcgcggtggacggcaactggtcgcgcgacacggaggggcacggcacgcacacgctgtccaccgccggcggccgcttcgtgcccagggccagcctcttcggctacgccaacggcacggccaagggcggcgcgccgcgggcgcgcgtcgcggcctacaaggtgtgctggtccggcgagtgcgccgccgccgacgtgctggcggggttcgaggccgccatccacgacggcgccgacgtcatctccgtctccttcggccaggacgcgccggtcgccaccgtcgcctccttcctccaggagcccgtcacgctcggctccctccacgccgccatgaatggcgtctccgtcgtctgctccgccggcaactccgggcccctcgaggacaccgtcgtcaacgccgcgccgtgggtcaccaccgtcgccgccagcaccgtcgaccgggacttccccaacgtcgtcacgctcggcaacaacgcgcacatgacggggatgagcttggagacgacgaccttgcactctacccagctctactcgatgatcaaagccagcgacgccgcgctcgcgagctctgaccccgccgtcgcgtcgacttgcccaccaggcacgcttgacccggagaaggtgaagaacaagatcgtggtgtgcgtgcgtggcggcgacatcccaagggtgacgaagggcatgaccgtcctcaacgccggcggcaccgggatgatcctcgcgaacggcgagatggacggcgacgacatcgtcgccgacccgcacgtgctcccagccaccatgatcacctacagcgaggccatgtcgctgtacaagtacatggactcctccaagaaccccgtggcgaacatctcgccgtccaagacggaggtcggcgtgaagaactcgccgtcggtggcggccttctcgtcgcgggggccaagcgggacgctgccgtgcgtgctgaagccggacatcgcggccccgggcgtggacatcctggcggcgttcaccgagtacgtcagcccgacggaggtccccaacgacgagcggcggtcggagtacgccatcctgtccggcacgtccatggcgtgcccgcacatctccggcgtgatcgggctcctcaaggcggcgcgcccggagtggagccccgccgcgatgcgctccgcgatcatgaccacggcgcgcacccaggacaacaccggcgcgccgatgcgcgaccacgacgggagggaggcgacggcgttcgcgttcggcgccggcaacatccacccgaaccgcgccgtcgacccgggcctcgtctacgacctctccaaggaggactacttcgtcttcctctgctccatggggttcaactccagcgacctcgccaagctgagtgccggcaacttcacctgcccggagaaggtcccgccgatggaggacctcaactacccgtccatcgtggtgccggcgctgcggcacacgtcgacggtggcgcggcggctcaagtgcgtcggccggccggcgacgtaccgcgcgacgtggcgcgccccgtacggggtcaacatgacggtggagccggcggcgctggagttcggcaaggacggcgaggtgaaggagttcaaggtgacgttcaagtcggagaaggacaagctcggcaagggctacgtctttgggaggctcgtctggtcggatgggacccaccatgtcaggagccccgtcgtggtcaacgccttggactga
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| Protein seq | MLFFLFFSFCCCCCCCYYGHNVWAQPYIVYLGSHPYGPDASAEEHARATQSHHDLLGSVLGSKQLAKDAILYSYTKNINGFAAHLEEEVATQIARHPDVVTVMASTMLKLHTTRSWDFMDMERDGQILPDSIWKHGSFTDEEVVGEVPKRWKGSCSDTAKYGVSCNKKLIGARYFNKDMLLSNPGAVDGNWSRDTEGHGTHTLSTAGGRFVPRASLFGYANGTAKGGAPRARVAAYKVCWSGECAAADVLAGFEAAIHDGADVISVSFGQDAPVATVASFLQEPVTLGSLHAAMNGVSVVCSAGNSGPLEDTVVNAAPWVTTVAASTVDRDFPNVVTLGNNAHMTGMSLETTTLHSTQLYSMIKASDAALASSDPAVASTCPPGTLDPEKVKNKIVVCVRGGDIPRVTKGMTVLNAGGTGMILANGEMDGDDIVADPHVLPATMITYSEAMSLYKYMDSSKNPVANISPSKTEVGVKNSPSVAAFSSRGPSGTLPCVLKPDIAAPGVDILAAFTEYVSPTEVPNDERRSEYAILSGTSMACPHISGVIGLLKAARPEWSPAAMRSAIMTTARTQDNTGAPMRDHDGREATAFAFGAGNIHPNRAVDPGLVYDLSKEDYFVFLCSMGFNSSDLAKLSAGNFTCPEKVPPMEDLNYPSIVVPALRHTSTVARRLKCVGRPATYRATWRAPYGVNMTVEPAALEFGKDGEVKEFKVTFKSEKDKLGKGYVFGRLVWSDGTHHVRSPVVVNALD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0326700 | RBH | 0.0 | 0.0 | 7.724214 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g23740 | RBH | 0.0 | 0.0 | 1.963177 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0326700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0011500 | RBH | 0.0 | 0.0 | 15.112042 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0011610 | RBH | 0.0 | 0.0 | 6.986681 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0011690 | RBH | 0.0 | 0.0 | 20.108917 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0011540 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011440 | RBH | 0.0 | 0.0 | 50.220310 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0223900 | SBH | 13.3466205 | 23.810964 | 9.2507845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011530 | RBH | 0.0 | 0.0 | 2.580802 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0236600 | RBH | 0 | 0.0136505 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0011040 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011200 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011060 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0011850 | RBH | 0.0 | 0.0 | 4.639774 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011310 | RBH | 0.0 | 0.0 | 2.799798 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011260 | RBH | 0.0 | 0.0 | 27.259129 |
