Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_08g0007480 | OGI:08023200 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr08:8110076-8112665 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | acttcctctctctctcccctctcgatctcgtcttctctctctcgcaggactcgatcgcggtaagctcccgaaccctagctcgatccagcgactgctcggccgtgcggatctctgagcggtgtgtgtgtgtgtgcagatggcggcggaggtggcgaaggcggcggtggtgccggagtcggtgctgaagaagcggaagcgggaggagcagtgggcggcggacaggaaggagaaggcgctcgccgagaagaagaaggccgtcgagagccgcaagctcatcttcgcccgcgccaagcagtacgcccaggagtacgacgcgcaggtgagcagagcaacctccccgctgcccgttgattcgcggaaCcctgtggcgtctaggaatggttcgtttagatttgcgttgcgcatcgacgcatcgtgaagTccgctaaaaaatatgagaattgttttctcctgtgacgattgattgtttagaagcgtctaatgcgcgtctgcaggtgtccgtggtggatgctgaacccgtttaattcaagatttcagtttcttttagctagataccagtaaTtagcaacttgcgttagatttaaaaaccaacggtgtagtcatgttctaattaatctgttttgctgagagctggtatgattaaatggtctaattatcccatgaatttgttttaatgccaACccacttaATttggtgggcgattggattatgTttttttttgcttttgaagtgtagttaatctgttcgTtggcattgttcaagggatagttcctttctgaaatgatcattatctttttgaatttattgtgacgattgtgttctttgcaggagaaggagcttgtgcagctcaagcgtgaggctcggatgaagggtgggttctacgtcagccctgaggccaaacttctgtttgtggtccgcatccgtgggtgagaaactataccgcaacggcttAaaattgtctttgtttgcataagcattgacagttcgctatgctttatgtagtatcaatgccatgcaccccaagaccaggaagatcttgcagcttCtgcggttgaggcaggttggtttaTGgaccagTtttcttagaaatgcgtgaactcttgcgtacgctggtgtattaactttGtgcttaaTtgtttgattctacagatcttcaatggtgtaTtcctcaaggttaacaaggcaaccattAacatgctgcgcagggttgagccatatGttgcaTatgggtatgttatcaattttagcTgctgTtCtgtttatataTttagctgtgctaattattgcttgctgttacagacttgtaatcctccatcgcaaattatcaatgcttttAagacctAaaattgtgtgatgaacatataagtttCCcccttgtttatagtctgttgtggacttgtggtattaccatttagacattcttgaaagagttaatcTtaatggccTttgcctatttctgttcaatcttgtttgtttgatctaagttcagaagctattgaaagtactatggtggatatgtcAactgttttagaattagaatgatgacactatctcaaTtgggttattagattattgctaagctgcTtgaggcataaatgttgctttgataatactttgatcagcagtagggttCtcAtagtgactttatagcttttgagcttgttagatacttgGTtatttttaatgttctacctggctgaatcaagtaccttctctggtgtgatcaggtaCccaaacctgaagagtgtcagggaattgatctacaagaggggttacggaaagctcaacaagcagaggattcctcTtcagaacaacaaagtcattgaggaggtatgtttgctcttgtaggctttcattgtgttgtatatatgccatttAcagctaatcaaattcttatttggcctaTTGtTggtcaaccattagggcttGgggaagcatgacatcatctgcattgaggatcttgtccacgagatcatgactgtcggtccacacttcaaggaggccaacaacttcctgtggCCcttcaagttgaaggcaccactcggtggcctcaagaagaagaggaaccactatgtcgagggtggtgatgccggcaaccgtgaggactacatcAacgagctcatccggaggatgaactaGgctttTCttctgttactggggagaatgtctccttatctatgtatgcaacatggttatttttatctttaggctgtcttgagctggataCTGGATATGCAATTTTGGCGTTCCAACAGGAGGTAGACTTGGCCTGTGTTTACAGTGAGACTTCCGGTGGGAAATCTGTACCCGTTGGCCCTGGGGTTTGTTCCTGTCTGGATGCTTTTGTTTCTTGATATGTTCGCTAGTTGTGCTTGCTTTATTGCCTTATTTGTTCTGTTGATCAACTCTCTGCATTGATCAACAATCTTCATTTAGGCTGAGTTCGTGGGGTTCGTATAtcctctaccattgctacaatatcagcggccgatagcttgtgccgggccatgtcatggtgattgctgttagtcagaatctcatgcttgttggtttctcgcggggaaaaaagtaccgctctacttcgagctaa
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| CDS seq | atggcggcggaggtggcgaaggcggcggtggtgccggagtcggtgctgaagaagcggaagcgggaggagcagtgggcggcggacaggaaggagaaggcgctcgccgagaagaagaaggccgtcgagagccgcaagctcatcttcgcccgcgccaagcagtacgcccaggagtacgacgcgcaggagaaggagcttgtgcagctcaagcgtgaggctcggatgaagggtgggttctacgtcagccctgaggccaaacttctgtttgtggtccgcatccgtggtatcaatgccatgcaccccaagaccaggaagatcttgcagcttCtgcggttgaggcagatcttcaatggtgtaTtcctcaaggttaacaaggcaaccattAacatgctgcgcagggttgagccatatGttgcaTatgggtaCccaaacctgaagagtgtcagggaattgatctacaagaggggttacggaaagctcaacaagcagaggattcctcTtcagaacaacaaagtcattgaggagggcttGgggaagcatgacatcatctgcattgaggatcttgtccacgagatcatgactgtcggtccacacttcaaggaggccaacaacttcctgtggCCcttcaagttgaaggcaccactcggtggcctcaagaagaagaggaaccactatgtcgagggtggtgatgccggcaaccgtgaggactacatcAacgagctcatccggaggatgaactaG
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| Protein seq | MAAEVAKAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN |
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| Function | 60S ribosomal protein L7-4 [UniProtKB/Swiss-Prot:Q9LHP1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_08g0007480 | OsLaMu_08g0007480.01 | Chr08 | 8110076 | 8112665 | + | NAM | ||
| CDS seq | atggcggcggaggtggcgaaggcggcggtggtgccggagtcggtgctgaagaagcggaagcgggaggagcagtgggcggcggacaggaaggagaaggcgctcgccgagaagaagaaggccgtcgagagccgcaagctcatcttcgcccgcgccaagcagtacgcccaggagtacgacgcgcaggagaaggagcttgtgcagctcaagcgtgaggctcggatgaagggtgggttctacgtcagccctgaggccaaacttctgtttgtggtccgcatccgtggtatcaatgccatgcaccccaagaccaggaagatcttgcagcttCtgcggttgaggcagatcttcaatggtgtaTtcctcaaggttaacaaggcaaccattAacatgctgcgcagggttgagccatatGttgcaTatgggtaCccaaacctgaagagtgtcagggaattgatctacaagaggggttacggaaagctcaacaagcagaggattcctcTtcagaacaacaaagtcattgaggagggcttGgggaagcatgacatcatctgcattgaggatcttgtccacgagatcatgactgtcggtccacacttcaaggaggccaacaacttcctgtggCCcttcaagttgaaggcaccactcggtggcctcaagaagaagaggaaccactatgtcgagggtggtgatgccggcaaccgtgaggactacatcAacgagctcatccggaggatgaactaG
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| Protein seq | MAAEVAKAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYINELIRRMN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.216154 | 121.661270 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0234000 | RBH | 15.264809 | 18.868023 | 60.012367 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g13690 | RBH | 8.623305 | 10.738729 | 13.008966 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0234000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0007810 | RBH | 7.744892 | 80.081306 | 38.466534 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0007880 | RBH | 0.927256 | 44.424919 | 17.296968 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0007970 | RBH | 12.697384 | 95.484741 | 47.330578 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0007960 | RBH | 1.468755 | 8.695641 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0007830 | RBH | 31.877186 | 307.490143 | 108.469048 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0130600 | RBH | 39.510159 | 105.1234395 | 89.6826515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0007800 | RBH | 2.775997 | 17.187954 | 7.281868 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0124500 | RBH | 39.295284 | 100.181721 | 65.4587365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0007450 | RBH | 1.697417 | 3.232885 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0007540 | RBH | 2.047023 | 219.027954 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0007360 | RBH | 18.703527 | 251.759094 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0008070 | RBH | 5.314138 | 19.192291 | 13.626788 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0025930 | RBH | 1.602707 | 77.401382 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G007780 | RBH | 4.114095 | 107.853508 | 26.863060 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0007600 | RBH | 7.044094 | 147.845703 | 60.680927 |
