Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_08g0006330 | OGI:08015780 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr08:6111735-6115467 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagtcaTtctgaaagtggaagagtttccaatagtcagcaaggtacgcgtacaaccaaaaaagtagacttagaacataaatgcacaatataaatttagaaaaaagaatggcaagaatgtgattcaggagaaacaaagcagaaactctatgacaagtaaaactgtgccggattaaagagtttgcacctatgaggctaCccattcggatgcgggcgaagcgcaggtaaggttcagcaccaccacggcttgtatgtgctcttatagcttctgtgaatgcgaggctgatacgctcggcatccactgctgtgtcagtaaccggatgtaattggatgtatcggagttgtttgttcagtaggtgctcaacgccaactggtgcggtgccgctccattcaatatctatgtaaaacagaatgatctttctgagattgggcataacccctgcctcaaagcacaggtgtgatatatctccaccgcaaaagaattcaagacactccaatgctgggaaccctgcaccgaatacgagggatgcgctgcatggagccaaaCgcttcacgctcaggcagagttcactgagtgaaggtagctctccaaggagccgaacctcatcagttgacatctctgtaacatcaagaacgaggaagcagaggttttggaggtgaccattgatccatctaggaactcgacgcaacctccatcctcccaggtggagtctctcaatattgagaggaggattggacaatgaactgagccggttatcctcatcataccagatacattctgcagacttagacatgcgcagagatatgagcttatgaagttttccaagggaagttaccagcgcatcaatctctctctctgacagagcctgTttactgtacagctcaaggtcctttagattggtcagctcaccaaggccaatggcgctcttgatatctaatatctcaaTtttttggagagtgcatagggacttcatgctgcctatcttCccatcaggtaaccctataccacttggaacaatcaggTgggacaagcgggacaaatgaacaatatctgatggcaaactgttctcatttgtgcaatctatttccaatgTtgacaaatattgaagtcctcgaatttcagtaggaagctctagtacgagcgcatgatggaggcttacaatcttCAaatacctcaactggaataattgcccaattgcggtcacatcaactctttcattgcctcctgtcccggtttttcccaagtgtaatatcaacactcggatatacttagacagtgacaacaaagacagggatacagatactccaaacagctgaagtgatctgagttgcaacaatctaggagcagttgtccctgatattttggaatctcctgaatcaccaactctagagtcgaccaataatcgacggaccttgaattcatgttgtctagacatttcttctagattgtatgccacgcagataaaattatcctctgcacacctacttaagatcaaatcaagcatcatatcatgtactctacaagaaactacctccccatatttggtttcttctggttgaattaagctcctattgatcagctcattgaaataactcttagcaacttcctctgaattccccccatggaaatagtggacaaagccttcagctatccattgtctaatcaaatcatcccttttgatggtgaagtcctctggataaataccaaggtataggaagcatgtcctaagatgacgaggaagatccttgtagctaaggtgtaaaatttgcctcatcccttccaatgtgggatttgtgccagacccccatgtgccaatagaattacgaataaTCtcTCCCAATATTCTTTCTTGggtggtgcaggctgattagctaataggctagcaatggtaatgattgcaagtggtaaaccgctacattttttcagaatctgagcggaaatttctctgaattgggaagggcaaccatcttccgagccaaatatcctgttaaagaatagccatcttgagttttcatcactgaggggctccattctgtaaatgaatcgtcgatgattgcagcatacccatctagcaacatcttccgatcgtgtggtcacaattactctacagcccatgccattttctggaaaaacagagcgaataatattccatgtaggcgcatcccacaagtcatcaacaacaaataggtacctgttaaattaaattatcaagtgccatacaattatttggtatgtgcgatgaataattgaaatatatcaactaattcaacaaTtaataagcacattTggttcaaggaaattcatgagTTTttttcttgtactaaccatgaattatattgctaaattaggatattcatttagaactcaaaCctaaatcgcaccaacatctgtgcgctatgctaatatagacctagataTttttgcccctcaactctggcacatgacccatttaagagaagagctttacttttctagaagccaaaaagctggcaaaggatgcctgtcagctccaaacaagtaattatgtagagcaaaacaggcactttagatagaaaacttcttgaaaccatatgaacccttgaaaacatagaacggaaaaagaattaatgcctaccactattataagtaaatggatactgaccttctatgttgtagatatgctctgatgttgtcaatgatgtctttaacttcacaatattcagaagacagccttatcggaagttttgattgtattcctttgagAaatcttgttacatcaggcctttgggaaactgaaacaaaTtccgtggtgttgaattgctgtccaattttttgataaacctccttggcgagcgtagttttacccagacctccaaagccaacaattggtaggaccattatttgttgatccgcatctgtcaaccactttataacctgttcccttgggCctttaatacccacaagattagcggcttcactgtacagtgctggcaaccgaggatcaatggccacaaagctagaactaggagtgtcatctagatcaaatttgtacctcttgtgccgttcatttatctctattagctgaatcttgagatccttgatatgctcggcagtctcaagacgggccctcaaagttctgagaaagtgagaaaccttatcgatgaagccagcttccacatcaccacctcccacgtggtgcacaaagtcatcgatgcaatcttcaatatcatatgccatctccctgacctggttcctccaagccttcaccactggatcaagttcatctgcatcctctagcttctcgagtagcgcgctcatggttgggagctcatctttaAgGaacaCaataTTttttgacatgcctacgagattggtgcacttgtcctccaccagcttagtgagcttctcaaaaagggcacctatcacacccttagatgcactcaccgcggtttctgccattgcccctcccaaatattttcctctgcaaatacggaagcaggttagcaagcatataacaatcgactggttctttaacaaattgcaactggtttggagcttagctcaccGgctctccttgaattcgactaggaagcaccagatcaggttgaacccaagcagccagcagcagagcaaaccagcattttcgaagcagaaacctaataatcagacaaccaagaagaacttaaatggaagaaattgggagaattcgccgtgaaggatgaacaaaatcaccatcctctgtgctcttcacttcc
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| CDS seq | atggcagaaaccgcggtgagtgcatctaagggtgtgataggtgccctttttgagaagctcactaagctggtggaggacaagtgcaccaatctcgtaggcatgtcaaaaAAtattGtgttCcTtaaagatgagctcccaaccatgagcgcgctactcgagaagctagaggatgcagatgaacttgatccagtggtgaaggcttggaggaaccaggtcagggagatggcatatgatattgaagattgcatcgatgactttgtgcaccacgtgggaggtggtgatgtggaagctggcttcatcgataaggtttctcactttctcagaactttgagggcccgtcttgagactgccgagcatatcaaggatctcaagattcagctaatagagataaatgaacggcacaagaggtacaaatttgatctagatgacactcctagttctagctttgtggccattgatcctcggttgccagcactgtacagtgaagccgctaatcttgtgggtattaaagGcccaagggaacaggttataaagtggttgacagatgcggatcaacaaataatggtcctaccaattgttggctttggaggtctgggtaaaactacgctcgccaaggaggtttatcaaaaaattggacagcaattcaacaccacggaAtttgtttcagtttcccaaaggcctgatgtaacaagattTctcaaaggaatacaatcaaaacttccgataaggctgtcttctgaatattgtgaagttaaagacatcattgacaacatcagagcatatctacaacatagaaggtacctatttgttgttgatgacttgtgggatgcgcctacatggaatattattcgctctgtttttccagaaaatggcatgggctgtagagtaattgtgaccacacgatcggaagatgttgctagatgggtatgctgcaatcatcgacgattcatttacagaatggagcccctcagtgatgaaaactcaagatggctattctttaacaggatatttggctcggaagatggttgcccttcccaattcagagaaatttccgctcagattctgaaaaaatgtagcgcctgcaccaccCAAGAAAGAATATTGGGAgaGAttattcgtaattctattggcacatgggggtctggcacaaatcccacattggaagggatgaggcaaattttacaccttagctacaaggatcttcctcgtcatcttaggacatgcttcctataccttggtatttatccagaggacttcaccatcaaaagggatgatttgattagacaatggatagctgaaggctttgtccactatttccatggggggaattcagaggaagttgctaagagttatttcaatgagctgatcaataggagcttaattcaaccagaagaaaccaaatatggggaggtagtttcttgtagagtacatgatatgatgcttgatttgatcttaagtaggtgtgcagaggataattttatctgcgtggcatacaatctagaagaaatgtctagacaacatgaattcaaggtccgtcgattattggtcgactctagagttggtgattcaggagattccaaaatatcagggacaactgctcctagattgttgcaactcagatcacttcagctgtttggagtatctgtatccctgtctttgttgtcactgtctaagtatatccgagtgttgatattacacttgggaaaaaccgggacaggaggcaatgaaagagttgatgtgaccgcaattgggcaattattccagttgaggtattTGaagattgtaagcctccatcatgcgctcgtactagagcttcctactgaaattcgaggacttcaatatttgtcaAcattggaaatagattgcacaaatgagaacagtttgccatcagatattgttcatttgtcccgcttgtcccAcctgattgttccaagtggtatagggttacctgatggGaagataggcagcatgaagtccctatgcactctccaaaaaAttgagatattagatatcaagagcgccattggccttggtgagctgaccaatctaaaggaccttgagctgtacagtaaAcaggctctgtcagagagagagattgatgcgctggtaacttcccttggaaaacttcataagctcatatctctgcgcatgtctaagtctgcagaatgtatctggtatgatgaggataaccggctcagttcattgtccaatcctcctctcaatattgagagactccacctgggaggatggaggttgcgtcgagttcctagatggatcaatggtcacctccaaaacctctgcttcctcgttcttgatgttacagagatgtcaactgatgaggttcggctccttggagagctaccttcactcagtgaactctgcctgagcgtgaagcGtttggctccatgcagcgcatccctcgtattcggtgcagggttcccagcattggagtgtcttgaattcttttgcggtggagatatatcacacctgtgctttgaggcaggggttatgcccaatctcagaaagatcattctgttttacatagatattgaatggagcggcaccgcaccagttggcgttgagcacctactgaacaaacaactccgatacatccaattacatccggttactgacacagcagtggatgccgagcgtatcagcctcgcattcacagaagctataagagcacatacaagccgtggtggtgctgaaccttacctgcgcttcgcccgcatccgaatggGtagcctcataggtgcaaactctttaatccggcacagttttacttgtcatagagtttctgctttgtttctcctgaatcacattcttgccattcttttttctaaatttatattgtgcatttatgttctaagtctacttttttggttgtacgcgtaccttgctgactattggaaactcttccactttcagaAtgactga
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| Protein seq | MAETAVSASKGVIGALFEKLTKLVEDKCTNLVGMSKNIVFLKDELPTMSALLEKLEDADELDPVVKAWRNQVREMAYDIEDCIDDFVHHVGGGDVEAGFIDKVSHFLRTLRARLETAEHIKDLKIQLIEINERHKRYKFDLDDTPSSSFVAIDPRLPALYSEAANLVGIKGPREQVIKWLTDADQQIMVLPIVGFGGLGKTTLAKEVYQKIGQQFNTTEFVSVSQRPDVTRFLKGIQSKLPIRLSSEYCEVKDIIDNIRAYLQHRRYLFVVDDLWDAPTWNIIRSVFPENGMGCRVIVTTRSEDVARWVCCNHRRFIYRMEPLSDENSRWLFFNRIFGSEDGCPSQFREISAQILKKCSACTTQERILGEIIRNSIGTWGSGTNPTLEGMRQILHLSYKDLPRHLRTCFLYLGIYPEDFTIKRDDLIRQWIAEGFVHYFHGGNSEEVAKSYFNELINRSLIQPEETKYGEVVSCRVHDMMLDLILSRCAEDNFICVAYNLEEMSRQHEFKVRRLLVDSRVGDSGDSKISGTTAPRLLQLRSLQLFGVSVSLSLLSLSKYIRVLILHLGKTGTGGNERVDVTAIGQLFQLRYLKIVSLHHALVLELPTEIRGLQYLSTLEIDCTNENSLPSDIVHLSRLSHLIVPSGIGLPDGKIGSMKSLCTLQKIEILDIKSAIGLGELTNLKDLELYSKQALSEREIDALVTSLGKLHKLISLRMSKSAECIWYDEDNRLSSLSNPPLNIERLHLGGWRLRRVPRWINGHLQNLCFLVLDVTEMSTDEVRLLGELPSLSELCLSVKRLAPCSASLVFGAGFPALECLEFFCGGDISHLCFEAGVMPNLRKIILFYIDIEWSGTAPVGVEHLLNKQLRYIQLHPVTDTAVDAERISLAFTEAIRAHTSRGGAEPYLRFARIRMGSLIGANSLIRHSFTCHRVSALFLLNHILAILFSKFILCIYVLSLLFWLYAYLADYWKLFHFQND |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_08g0006330 | OsLaMu_08g0006330.01 | Chr08 | 6111735 | 6115467 | - | NAM | ||
| CDS seq | atggcagaaaccgcggtgagtgcatctaagggtgtgataggtgccctttttgagaagctcactaagctggtggaggacaagtgcaccaatctcgtaggcatgtcaaaaAAtattGtgttCcTtaaagatgagctcccaaccatgagcgcgctactcgagaagctagaggatgcagatgaacttgatccagtggtgaaggcttggaggaaccaggtcagggagatggcatatgatattgaagattgcatcgatgactttgtgcaccacgtgggaggtggtgatgtggaagctggcttcatcgataaggtttctcactttctcagaactttgagggcccgtcttgagactgccgagcatatcaaggatctcaagattcagctaatagagataaatgaacggcacaagaggtacaaatttgatctagatgacactcctagttctagctttgtggccattgatcctcggttgccagcactgtacagtgaagccgctaatcttgtgggtattaaagGcccaagggaacaggttataaagtggttgacagatgcggatcaacaaataatggtcctaccaattgttggctttggaggtctgggtaaaactacgctcgccaaggaggtttatcaaaaaattggacagcaattcaacaccacggaAtttgtttcagtttcccaaaggcctgatgtaacaagattTctcaaaggaatacaatcaaaacttccgataaggctgtcttctgaatattgtgaagttaaagacatcattgacaacatcagagcatatctacaacatagaaggtacctatttgttgttgatgacttgtgggatgcgcctacatggaatattattcgctctgtttttccagaaaatggcatgggctgtagagtaattgtgaccacacgatcggaagatgttgctagatgggtatgctgcaatcatcgacgattcatttacagaatggagcccctcagtgatgaaaactcaagatggctattctttaacaggatatttggctcggaagatggttgcccttcccaattcagagaaatttccgctcagattctgaaaaaatgtagcgcctgcaccaccCAAGAAAGAATATTGGGAgaGAttattcgtaattctattggcacatgggggtctggcacaaatcccacattggaagggatgaggcaaattttacaccttagctacaaggatcttcctcgtcatcttaggacatgcttcctataccttggtatttatccagaggacttcaccatcaaaagggatgatttgattagacaatggatagctgaaggctttgtccactatttccatggggggaattcagaggaagttgctaagagttatttcaatgagctgatcaataggagcttaattcaaccagaagaaaccaaatatggggaggtagtttcttgtagagtacatgatatgatgcttgatttgatcttaagtaggtgtgcagaggataattttatctgcgtggcatacaatctagaagaaatgtctagacaacatgaattcaaggtccgtcgattattggtcgactctagagttggtgattcaggagattccaaaatatcagggacaactgctcctagattgttgcaactcagatcacttcagctgtttggagtatctgtatccctgtctttgttgtcactgtctaagtatatccgagtgttgatattacacttgggaaaaaccgggacaggaggcaatgaaagagttgatgtgaccgcaattgggcaattattccagttgaggtattTGaagattgtaagcctccatcatgcgctcgtactagagcttcctactgaaattcgaggacttcaatatttgtcaAcattggaaatagattgcacaaatgagaacagtttgccatcagatattgttcatttgtcccgcttgtcccAcctgattgttccaagtggtatagggttacctgatggGaagataggcagcatgaagtccctatgcactctccaaaaaAttgagatattagatatcaagagcgccattggccttggtgagctgaccaatctaaaggaccttgagctgtacagtaaAcaggctctgtcagagagagagattgatgcgctggtaacttcccttggaaaacttcataagctcatatctctgcgcatgtctaagtctgcagaatgtatctggtatgatgaggataaccggctcagttcattgtccaatcctcctctcaatattgagagactccacctgggaggatggaggttgcgtcgagttcctagatggatcaatggtcacctccaaaacctctgcttcctcgttcttgatgttacagagatgtcaactgatgaggttcggctccttggagagctaccttcactcagtgaactctgcctgagcgtgaagcGtttggctccatgcagcgcatccctcgtattcggtgcagggttcccagcattggagtgtcttgaattcttttgcggtggagatatatcacacctgtgctttgaggcaggggttatgcccaatctcagaaagatcattctgttttacatagatattgaatggagcggcaccgcaccagttggcgttgagcacctactgaacaaacaactccgatacatccaattacatccggttactgacacagcagtggatgccgagcgtatcagcctcgcattcacagaagctataagagcacatacaagccgtggtggtgctgaaccttacctgcgcttcgcccgcatccgaatggGtagcctcataggtgcaaactctttaatccggcacagttttacttgtcatagagtttctgctttgtttctcctgaatcacattcttgccattcttttttctaaatttatattgtgcatttatgttctaagtctacttttttggttgtacgcgtaccttgctgactattggaaactcttccactttcagaAtgactga
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| Protein seq | MAETAVSASKGVIGALFEKLTKLVEDKCTNLVGMSKNIVFLKDELPTMSALLEKLEDADELDPVVKAWRNQVREMAYDIEDCIDDFVHHVGGGDVEAGFIDKVSHFLRTLRARLETAEHIKDLKIQLIEINERHKRYKFDLDDTPSSSFVAIDPRLPALYSEAANLVGIKGPREQVIKWLTDADQQIMVLPIVGFGGLGKTTLAKEVYQKIGQQFNTTEFVSVSQRPDVTRFLKGIQSKLPIRLSSEYCEVKDIIDNIRAYLQHRRYLFVVDDLWDAPTWNIIRSVFPENGMGCRVIVTTRSEDVARWVCCNHRRFIYRMEPLSDENSRWLFFNRIFGSEDGCPSQFREISAQILKKCSACTTQERILGEIIRNSIGTWGSGTNPTLEGMRQILHLSYKDLPRHLRTCFLYLGIYPEDFTIKRDDLIRQWIAEGFVHYFHGGNSEEVAKSYFNELINRSLIQPEETKYGEVVSCRVHDMMLDLILSRCAEDNFICVAYNLEEMSRQHEFKVRRLLVDSRVGDSGDSKISGTTAPRLLQLRSLQLFGVSVSLSLLSLSKYIRVLILHLGKTGTGGNERVDVTAIGQLFQLRYLKIVSLHHALVLELPTEIRGLQYLSTLEIDCTNENSLPSDIVHLSRLSHLIVPSGIGLPDGKIGSMKSLCTLQKIEILDIKSAIGLGELTNLKDLELYSKQALSEREIDALVTSLGKLHKLISLRMSKSAECIWYDEDNRLSSLSNPPLNIERLHLGGWRLRRVPRWINGHLQNLCFLVLDVTEMSTDEVRLLGELPSLSELCLSVKRLAPCSASLVFGAGFPALECLEFFCGGDISHLCFEAGVMPNLRKIILFYIDIEWSGTAPVGVEHLLNKQLRYIQLHPVTDTAVDAERISLAFTEAIRAHTSRGGAEPYLRFARIRMGSLIGANSLIRHSFTCHRVSALFLLNHILAILFSKFILCIYVLSLLFWLYAYLADYWKLFHFQND
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.037457 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0202400 | RBH | 1.763358 | 1.007438 | 1.853574 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g10260 | RBH | 1.100538 | 0.618509 | 0.387539 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0202400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006600 | RBH | 0.059423 | 1.641622 | 1.484535 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006530 | RBH | 0.282072 | 0.340209 | 1.108645 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006670 | RBH | 0.151953 | 0.704635 | 1.616566 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006530 | RBH | 0.022539 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006550 | RBH | 1.981553 | 2.184815 | 5.516253 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0090900 | RBH | 1.813287 | 2.027621 | 0.070099 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006280 | RBH | 0.128599 | 0.191025 | 0.617948 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0093400 | RBH | 0.3124455 | 0.099965 | 0.1299595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006230 | RBH | 0.273972 | 0.230640 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006280 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006310 | RBH | 4.308905 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006520 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006380 | RBH | 0.129056 | 0.0 | 0.832900 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0006240 | RBH | 0.559538 | 1.249387 | 2.962956 |
