Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_08g0000210 | OGI:08000410 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr08:186974-188457 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaaggtgaagacgaacactctttgttgaaaaatgaacagaacattaattgattacAatgttgcaactatgtagtatgcatgtgaagataagtacaattattatatatattctagtagtaattacaagattgtagcaattgcttaattatcccctctctatatgcgAattattactacaagtagctgtacacctgaaccatgcagctagccacaagcatggcgctgtacgtagtaccaaaaaaaacacaggcatgaaaattaagtaagaaaaaggtcaaattaattcgtactgtaaatacataaaaccactggtggcaggcATatatgcaagattactccgatcctcactcgatcagttgagctgagcttttaattatatagcttcttcatcagggctgtgcttgtagaatgtagatcgatcaattaagcaagcaattatatatggaaggaggagaattaattaaggatgatAtgatttgttGgatgcatgagaGgaggatgaggagatggatggatggatcagacgtcgacgacgcaggcggcggctcgctggaacctgaagtagccgttgccgccgccggagttggagCcgtagcttccccggccgtcgttgacgatgagcagggcggggcacctgacgcggaggtggtagtgtccggtgatgaaggcgccggccttgtagcggatccagccgtcgacgcggatggtgacgagcaggtagccggcggtctcgtcctggGTGAtGgagatggcgaggtagggcgggagctggacgttgttgccggagaggaaaggggaccagacggtgaggtccgggtggccctggtacAccggcggcagcgacgtcggcacggtgatgcggaGGcccttgtactcggcgtacacGtcggcgcggtcgtagtagatgcccacgcGctcgttgccgttgcgggcggcgagggtggtctgcatggtgacggtgaGgaaggagaagtagccggaggaggcggtggcgccggcgtaggaaccaccggtggtgacgttgaggcagacgacggtgaggtcgttgaggtagaagcgaggcttggtggggcggaggatgagccagacgatgaggacgatgaggaggaggaggagaaggatgccgAagatggccgcgcagcaacgccggtacaggcgctgccgctcgcaatccTtgtgttgctcgcagtgcttgatcgacattatatatctatattcTtgctagctagctagActatttctctaaatttcttgtgtaattcttcccaactctctctcaatctgctacaacttgttgcttcaattccttgtagctagcaactaactgggactaataatcgAtcttactaataattgagaggtatggtaggaaaggaagggcagagagtgagtgaggagtgagctcgctagctaccaacaacaataagctaggtAGGaggaggagaagaagatggacaagtaagtggagaagaagaagaagaaga
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| CDS seq | atgtcgatcaagcactgcgagcaacacaAggattgcgagcggcagcgcctgtaccggcgttgctgcgcggccatctTcggcatccttctcctcctcctcctcatcgtcctcatcgtctggctcatcctccgccccaccaagcctcgcttctacctcaacgacctcaccgtcgtctgcctcaacgtcaccaccggtggttcctacgccggcgccaccgcctcctccggctacttctccttcCtcaccgtcaccatgcagaccaccctcgccgcccgcaacggcaacgagCgcgtgggcatctactacgaccgcgccgaCgtgtacgccgagtacaagggCCtccgcatcaccgtgccgacgtcgctgccgccggTgtaccagggccacccggacctcaccgtctggtcccctttcctctccggcaacaacgtccagctcccgccctacctcgccatctcCaTCACccaggacgagaccgccggctacctgctcgtcaccatccgcgtcgacggctggatccgctacaaggccggcgccttcatcaccggacactaccacctccgcgtcaggtgccccgccctgctcatcgtcaacgacggccggggaagctacgGctccaactccggcggcggcaacggctacttcaggttccagcgagccgccgcctgcgtcgtcgacgtctga
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| Protein seq | MSIKHCEQHKDCERQRLYRRCCAAIFGILLLLLLIVLIVWLILRPTKPRFYLNDLTVVCLNVTTGGSYAGATASSGYFSFLTVTMQTTLAARNGNERVGIYYDRADVYAEYKGLRITVPTSLPPVYQGHPDLTVWSPFLSGNNVQLPPYLAISITQDETAGYLLVTIRVDGWIRYKAGAFITGHYHLRVRCPALLIVNDGRGSYGSNSGGGNGYFRFQRAAACVVDV |
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| Function | NDR1/HIN1-like protein 1 [UniProtKB/Swiss-Prot:Q9SRN0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_08g0000210 | OsLaMu_08g0000210.01 | Chr08 | 186974 | 188457 | - | NAM | ||
| CDS seq | atgtcgatcaagcactgcgagcaacacaAggattgcgagcggcagcgcctgtaccggcgttgctgcgcggccatctTcggcatccttctcctcctcctcctcatcgtcctcatcgtctggctcatcctccgccccaccaagcctcgcttctacctcaacgacctcaccgtcgtctgcctcaacgtcaccaccggtggttcctacgccggcgccaccgcctcctccggctacttctccttcCtcaccgtcaccatgcagaccaccctcgccgcccgcaacggcaacgagCgcgtgggcatctactacgaccgcgccgaCgtgtacgccgagtacaagggCCtccgcatcaccgtgccgacgtcgctgccgccggTgtaccagggccacccggacctcaccgtctggtcccctttcctctccggcaacaacgtccagctcccgccctacctcgccatctcCaTCACccaggacgagaccgccggctacctgctcgtcaccatccgcgtcgacggctggatccgctacaaggccggcgccttcatcaccggacactaccacctccgcgtcaggtgccccgccctgctcatcgtcaacgacggccggggaagctacgGctccaactccggcggcggcaacggctacttcaggttccagcgagccgccgcctgcgtcgtcgacgtctga
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| Protein seq | MSIKHCEQHKDCERQRLYRRCCAAIFGILLLLLLIVLIVWLILRPTKPRFYLNDLTVVCLNVTTGGSYAGATASSGYFSFLTVTMQTTLAARNGNERVGIYYDRADVYAEYKGLRITVPTSLPPVYQGHPDLTVWSPFLSGNNVQLPPYLAISITQDETAGYLLVTIRVDGWIRYKAGAFITGHYHLRVRCPALLIVNDGRGSYGSNSGGGNGYFRFQRAAACVVDV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.048549 | 20.024893 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0102700 | RBH | 3.268713 | 1.625193 | 22.553152 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g01220 | RBH | 1.968740 | 0.966122 | 5.134023 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0102700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0000210 | RBH | 1.070009 | 30.437460 | 49.148731 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0000220 | RBH | 0.396988 | 5.882828 | 13.230163 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0000220 | RBH | 4.248782 | 30.839346 | 48.978851 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0000220 | RBH | 0.574523 | 0.711437 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0000190 | RBH | 5.896205 | 12.167876 | 93.030098 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0001800 | RBH | 5.774776 | 5.8561685 | 0.6277915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0020340 | SBH | 0.0 | 0.723354 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0001800 | RBH | 5.446832 | 0.9167355 | 0.136845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0000230 | RBH | 0.252182 | 0.571729 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0000210 | RBH | 1.586806 | 21.827513 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0000220 | RBH | 17.301634 | 22.990467 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0000220 | RBH | 6.498537 | 3.359825 | 7.583301 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0031740 | RBH | 0.0 | 34.869965 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G000210 | RBH | 0.0 | 0.598941 | 8.803228 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0000210 | RBH | 2.285791 | 46.434933 | 37.818439 |
