Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_08g0000200 | OGI:08000400 | 13/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr08:182759-183664 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcAgccaaagtaactaattaacaatgaacaagtaagtatgtagggttaactatactgaactgaaaataaatgccatatatatatatagttgcatggaatggaagatgaatatatatatatatatatatatatattattatatatatatatatatatatatattatatatatatatctatatattatatattatatatatagagagagagagagagagagagagagagagagagatctaaAGagagatgagtaataattggatcagtaggagatgtggcaggtggtggggtggaagtggtggggattatgattattagtggtggtggtggcgttggaaggagaagggtggaggcggagcctgagggggcagtcgagcttgatgttggggccgggcagcctgataaTggcggacggcgtgagcttgatctcggtcttggcggccatggtgacgtggatggagtagatgccctcggtgtcctcgcggcggaaggcggcggcggcgaggccgcccaagagctggtggcggccttggaaggagggggtgatgcgggtggtGttggtggaggcgggctgggagaagtcagggaggagggcgtgggcgaagcgctggtcgtGgtagtaggcgtcggcggcgatggagtggtagcggagggcgaggcgggcgttgtgcctcgtcaggtccacccccaccgacaggttgtagctcagcgtccactccttgagcgccagcgagaaggtggacagctccgcccccgccgCcgtcgcgtgcaggaggtttGgccggaacatgaggtacaccaccatcgccaccacaagcacgcaccccgtccccgccaccacgcAgctcgccacgccgcacaccgccgaccgccGgcaGgggtagcaaacctcgccgcccgctcccat
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| CDS seq | atgggagcgggcggcgaggtttgctacccCtgcCggcggtcggcggtgtgcggcgtggcgagcTgcgtggtggcggggacggggtgcgtgcttgtggtggcgatggtggtgtacctcatgttccggcCaaacctcctgcacgcgacgGcggcgggggcggagctgtccaccttctcgctggcgctcaaggagtggacgctgagctacaacctgtcggtgggggtggacctgacgaggcacaacgcccgcctcgccctccgctaccactccatcgccgccgacgcctactacCacgaccagcgcttcgcccacgccctcctccctgacttctcccagcccgcctccaccaaCaccacccgcatcaccccctccttccaaggccgccaccagctcttgggcggcctcgccgccgccgccttccgccgcgaggacaccgagggcatctactccatccacgtcaccatggccgccaagaccgagatcaagctcacgccttactttggcTga
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| Protein seq | MGAGGEVCYPCRRSAVCGVASCVVAGTGCVLVVAMVVYLMFRPNLLHATAAGAELSTFSLALKEWTLSYNLSVGVDLTRHNARLALRYHSIAADAYYHDQRFAHALLPDFSQPASTNTTRITPSFQGRHQLLGGLAAAAFRREDTEGIYSIHVTMAAKTEIKLTPYFG |
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| Function | NDR1/HIN1-like protein 2 [UniProtKB/Swiss-Prot:Q9SRN1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_08g0000200 | OsLaMu_08g0000200.01 | Chr08 | 182759 | 183664 | - | NAM | ||
| CDS seq | atgggagcgggcggcgaggtttgctacccCtgcCggcggtcggcggtgtgcggcgtggcgagcTgcgtggtggcggggacggggtgcgtgcttgtggtggcgatggtggtgtacctcatgttccggcCaaacctcctgcacgcgacgGcggcgggggcggagctgtccaccttctcgctggcgctcaaggagtggacgctgagctacaacctgtcggtgggggtggacctgacgaggcacaacgcccgcctcgccctccgctaccactccatcgccgccgacgcctactacCacgaccagcgcttcgcccacgccctcctccctgacttctcccagcccgcctccaccaaCaccacccgcatcaccccctccttccaaggccgccaccagctcttgggcggcctcgccgccgccgccttccgccgcgaggacaccgagggcatctactccatccacgtcaccatggccgccaagaccgagatcaagctcacgccttactttggcTga
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| Protein seq | MGAGGEVCYPCRRSAVCGVASCVVAGTGCVLVVAMVVYLMFRPNLLHATAAGAELSTFSLALKEWTLSYNLSVGVDLTRHNARLALRYHSIAADAYYHDQRFAHALLPDFSQPASTNTTRITPSFQGRHQLLGGLAAAAFRREDTEGIYSIHVTMAAKTEIKLTPYFG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g01210 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0000200 | RBH | 0.0 | 4.628103 | 0.885196 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0000210 | RBH | 0.0 | 0.0 | 0.925030 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0000210 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0000210 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0000180 | RBH | 0.0 | 0.0 | 2.352144 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0001800 | SBH | 5.774776 | 5.8561685 | 0.6277915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0001800 | SBH | 5.446832 | 0.9167355 | 0.136845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0000220 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0000200 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0000210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0000210 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0031730 | RBH | 0.205154 | 12.043517 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G000200 | RBH | 0.0 | 0.0 | 0.520998 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0000200 | RBH | 0.0 | 0.0 | 1.200805 |
