Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_07g0025690 | OGI:07075380 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr07:27897885-27902345 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagtttattctaaactcatgcatgtttgctgcaatagtgatgctggttctcatgtttgatccagactctcgattagagatgatcgtgatcgatatatgtgctgcaatcatactgtcatttggcaacttacatatcccagcagcactcgtgcgtgtcagcctcgcggggtatcgccttgcagaacataactacttcggtgttgatgaccaaaaaaattttggtgaatctctaaccatcttctatagcatggtgcttggccaaggaatactttacatcgttgcaggcatactggaggtcttctcgttcatccctcGgagaaccctcgtccgccgtggtGgattcacaggccaatggggagttgaatctgtcaatctgtactacacAtacgccttcgagaaaaacatggaaggaggtgtatttgctgcaaagaggatcagcctcagcAactttgccatggattctataaattctgacttgtccaagaaacagctgtatgggatccggatgatgcacatttttctgcagagagatccgaccagggcacagctactGgagaaactgaccacttcaacgcagaccatggcaaggttaatcagcatgctgggctggactagcagaaatgatcatacaactatcaggttatatgccgccAaggtaactgccgagcttgcaaagagcctccgagttgtaactgtccctgggacgatgtaccttgtttctacactcctggAtactgacagaaaaccAaaaagaagacacccacttctggatgaagatgatgatcgagatcctttatttgttgatacagtagaaagtcaggagaaaagccaggatgcagctggtgatcaagggcaaaaacaagggtcAcctggggacactgatatcatgctgaaaacaccaacccgatcAacgcacttgaacaacccaagatccacatacAaatgttgggaggggatatcagagtgctagtcaattcccaaggagcaaccactgacagacgatgatcttcttcctgcactaGgcatgtcAattgtttatagccttgctggttgtgatcaaaataactctgtggaaatcgacagagtaactgacctgatccccaaaatcattggattcacaagcttcacaagtgcaacagtgaattccgaagAacagaaggttctcttaaagtcatcactgaaggtgttgcagaggctcacaagcattgaaggagaaattggcataacactaaggcacaagatatcaaaacatcccttcctgttgagaaaccttgcagagatcttgggtgacaacagcataacaccagaattaaggaagctcgtggcagaaatcctcagaaatcttgccattgacagagatgcaaggcaggagattgggcaaatacaggtgctcattaccaggctgatgaaggcattcctcaattgcaacggaccatctagtacaaatgctgattgcttgctgccaaaggtcgctgggcaagcattggcaatgctagcatcagAaaatgtggataactgcttggttatgtcgaaggaaccagagttcattaacaaactaagaaatatgatcctaatccatgatgataatAaatacatatAtgtggcagcaagcttgttacgtaatctatgcatgcatgctcaaCccgagctcatggaatcagacctaaagggactatctcacatcttgccagcggtaagccctgatAatcttggtgtatagcattattagaggtgtttagcatgctatatcatttgtacatttggtatctgttagttattgtcaaaatttatcttttctttttttttcttttgtaaaagttgacatctatttactacttcctccgtttcatattataagactttctagttaatgaatcatctatataaatatgggcaatgctagaaagtcttataacctgaaacggaggtagtactaaactatataagtataactacagtttgtccaactatgtttatcatgctacatgacattgttgattccactacaGgtgttggaaagaataatggatgctgaaggaccagaactagaaatcctcattggacttagttcacagatatgcaaagtccttcctaaagaattttcccaagAactagagcacagacagattaagcgaagattcattgagaggctagtggacttactgaatgcaaacatgAaaccaagtgctcattgccctgggatccggagggtgatacttgagcaatccATatacatgatggagtgcaattctcactatgccaattgtttcaatgaataccagatgatggacgcactgtcaattgtagaattgacgtcctcaagggctgagaactacatggttttcttgggtgacacaggcttcatggaatgcagaaaacctctcttggctctagtggacaggacaaaagaactgatgggtcgtcagtggctgcaaggcatcaacagtgcctactgaaaaaaatatataaaatgattttgcatctacattcaaaagacaatgcatattgttagtgcagggtaaataaagtgatcctgcatttacatccagaaaacacatattgctagaaagagcatacaTttaccTttaagatgatcaaagggtattgtatctgtacctcattaaccttgcactgtaatccatttgctactgatgatttatccaattatcatttgttggagtggacaaattgcaactcctatcccactCccacgttctagcgtggcatcgattatttccataaaatttctgtggtttatttgacacctaaaaattgggtttactgccctattgattaaccccattcaatacaagtcagtactcagtagcaGcccataactcacctactatggctgagaaattcagaccatgacaatgcgcaacttatggagtacaatattcctctttcttgttctgtggacagagcAacaatgttgattaatgtgagctcgactcctattggagTtacaggacagagcaacaagcttgattaatggatcacagcaccaagatcacacatggcaaatcAagcttcatccAaacctctcTtaccaggcagaaTtggagttacaggaaatccagggcataataCaagacctaatgcctccgcagaccagagagagctcctatacccaaaagctcaagtttccactgcaaatgcttatcagctcctaacataccacagatcactttggaagcccgccgagtatatctGgatcaaatttgtccccAacaaatgcaaacattcctgtggttagcttttagagacaagttaagcaccaaagacaatatggtcaagaagaactgggacgacgAtcctcactgtgacatatgcccagcaatagaaactgcaggccatattattccaagatgcaaggcagccacaactttatgggagaaactaggtctccgagacctagctaattcctcgcagtcagcagcaattttcttagaaaCaatctgggacagctacaacagcattcagggtatacaagaaatctggtttgcagtctgcgcatacacactttggaagacaagaaataacaggatctttgacaggcaacaagccagtctttcaaacAcaattcagcaaattatcgactctcttgaactgtggaagcaccgagccaacgcagtcactaaggcgaaatcctctctctgtgtgtttcaatcagagaaagttaatgtaaagtaaatcaattttgtcttcaagtttctgtacattctttcttcattttttcccctctgtgtattctcattctgTaacttcgttcatttCcattttgtcaatgaaatgactataaggtagagctggctctaccttcttacgtAaaaaactAaaaaaaactcgactcctaattaagtcatgcgcccatgtcaacgcactatgatgccaatatgccacggtgcctgatttttgtggagcacagggctctcaaattcaaatatacgtctcccatattgcgaccgaaactacggtgcatcgagtttctgcaactcaccattgcgataaacctaatAaactagtaatcgaacaacactccccaaatttccacatccctaagcacaacagtcgattccagcataaccatgattctctctaTttttcttttaacgcaagtataaccatgattataacttaaccaaattaccaaagcAacgagaaattaaaaaaaAGgatcagtttccttgccaaGcgaagaggatcctagattggattcgaaaaaaaaaagagagagagggggagagagagcAaccgttgaggaatggcctggatggttccctctCcctcgccgcgccggcttcccctgccccgccgcccagtaggcaccgtcgcgacgagctgctcccctcgcctCcccgcgccgccatcgccggtcgccctcgctgtcggtcgaggcaggcatttgcccggaccataggaagcaaggtagtcggcggtaggtgccaGgccatggcccat
More
|
||||||||||
| CDS seq | atgggccatggcCtggcacctaccgccgactaccttgcttcctatggtccgggcaaatgcctgcctcgaccgacagcgagggcgaccggcgatggcggcgcgggGaggcgaggggagcagctcgtcgcgacggtgcctactgggcggcggggcaggggaagccggcgcggcgaggGagagggaaccatccaggccattcctcaacgtgttatgccaatttctccttcaatgcttgtgagcctctgcaacaccttcagtgatgactttaagagaaccttctgtTcttcggaattcactgttgcacttgtgaagcttgtgaatccaatgattttggggatcaggagtgtagaaacaaggtacatcgtcccagggacagttacaactcggaggctctttgcaagctcggcagttacctTggcggcatataacctgatagttcccagcatgctgattaaccttgccatggtctgcgttgaagtggtcagtttctcCagtagctgtgccctggtcggatctctctgcagaaaaatgtgcatcatccggatcccatacagctgtttcttggacaagtcagaatttatagaatccatggcaaagtTgctgaggctgatcctctttgcagcaaatacacctccttccatgtttttctcgaaggcgtaTattgacagattcaactccccattggcctgtgaatcCaccacggcggacgagggttctcCgagggatgaacgagaagacctccagtatgcctgcaacgatgtaaagcgataccccgcgaggctgacacgcacgagtgctgctgggatatgtaagttgccaaatgacagtatgattgcagcacatatatcgatcacgatcatctctaatcgagagtctggatcaaacatgagaaccagcatcactattgcagcaaacatgcatgagtttagaataaactga
More
|
||||||||||
| Protein seq | MGHGLAPTADYLASYGPGKCLPRPTARATGDGGAGRRGEQLVATVPTGRRGRGSRRGEGEGTIQAIPQRVMPISPSMLVSLCNTFSDDFKRTFCSSEFTVALVKLVNPMILGIRSVETRYIVPGTVTTRRLFASSAVTLAAYNLIVPSMLINLAMVCVEVVSFSSSCALVGSLCRKMCIIRIPYSCFLDKSEFIESMAKLLRLILFAANTPPSMFFSKAYIDRFNSPLACESTTADEGSPRDEREDLQYACNDVKRYPARLTRTSAAGICKLPNDSMIAAHISITIISNRESGSNMRTSITIAANMHEFRIN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0025690 | OsLaMu_07g0025690.01 | Chr07 | 27897885 | 27902345 | - | NAM | ||
| CDS seq | atgggccatggcCtggcacctaccgccgactaccttgcttcctatggtccgggcaaatgcctgcctcgaccgacagcgagggcgaccggcgatggcggcgcgggGaggcgaggggagcagctcgtcgcgacggtgcctactgggcggcggggcaggggaagccggcgcggcgaggGagagggaaccatccaggccattcctcaacgtgttatgccaatttctccttcaatgcttgtgagcctctgcaacaccttcagtgatgactttaagagaaccttctgtTcttcggaattcactgttgcacttgtgaagcttgtgaatccaatgattttggggatcaggagtgtagaaacaaggtacatcgtcccagggacagttacaactcggaggctctttgcaagctcggcagttacctTggcggcatataacctgatagttcccagcatgctgattaaccttgccatggtctgcgttgaagtggtcagtttctcCagtagctgtgccctggtcggatctctctgcagaaaaatgtgcatcatccggatcccatacagctgtttcttggacaagtcagaatttatagaatccatggcaaagtTgctgaggctgatcctctttgcagcaaatacacctccttccatgtttttctcgaaggcgtaTattgacagattcaactccccattggcctgtgaatcCaccacggcggacgagggttctcCgagggatgaacgagaagacctccagtatgcctgcaacgatgtaaagcgataccccgcgaggctgacacgcacgagtgctgctgggatatgtaagttgccaaatgacagtatgattgcagcacatatatcgatcacgatcatctctaatcgagagtctggatcaaacatgagaaccagcatcactattgcagcaaacatgcatgagtttagaataaactga
More
|
|||||||
| Protein seq | MGHGLAPTADYLASYGPGKCLPRPTARATGDGGAGRRGEQLVATVPTGRRGRGSRRGEGEGTIQAIPQRVMPISPSMLVSLCNTFSDDFKRTFCSSEFTVALVKLVNPMILGIRSVETRYIVPGTVTTRRLFASSAVTLAAYNLIVPSMLINLAMVCVEVVSFSSSCALVGSLCRKMCIIRIPYSCFLDKSEFIESMAKLLRLILFAANTPPSMFFSKAYIDRFNSPLACESTTADEGSPRDEREDLQYACNDVKRYPARLTRTSAAGICKLPNDSMIAAHISITIISNRESGSNMRTSITIAANMHEFRIN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0654500 | RBH | 0.0 | 0.101492 | 0.856709 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0654500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0026000 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026040 | SBH | 0.0 | 0.000000 | 0.922084 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0025900 | SBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0018160 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0025910 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0026390 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025670 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0025750 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0040110 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0025660 | SBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G025690 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0025600 | RBH | 0.000000 | 0.000000 | 2.834891 |
