Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_07g0024330 | OGI:07073070 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr07:26895389-26897557 | ||||||||
| Gene Symbol | OsMYB86 | ||||||||||
| DNA seq | ctctgtcccagctcaagctttcgtcttcgtcttcgccatcgtcgtcgggacatcgccggcggtttggtttgttctctctcggtcgtcggcggcggcaattgcgacattgagcacggtggtggtggtgtccatctatggcgaagcgggcgggcggcgcgaggaagaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattgccaagtatggccatggctgctggagctccgtccccaagcttgcaggtatatacactcactagctatatctaactatacatagttcatagctctagtagcactagtactactacaaagatggacaatgtaatttagcttaattagtgccataatactagttactctctctgtgcatgatttgtgcaattgtgcttaattacgaaattttcatgtcacttaattaactgaattgagctgaaatgaacctttttaggtaggaattaattggtagtttgaatttgatatatatcattagaaattccaatttgtggttgcattaggccttgagagatgtgggaagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattctcacaggaagaagaagacctcatcatccatctccattccatgctaggaaacaagtaattaactcaaacaaatccatatacacattactactagattatcatactagtaatttaactacttctcttaattaattatagcttggatgatttctagctaattaatcaatcaaacaggaaattaatcagcttgaattgaatcaggtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaacttctggaactcttacatcaagaagaagcttcgccagcgcggcatcgatccggccacccacaagccgctcgccgaggtcgtcgccgccgccgcctgcgcccgcacgccggcggtgttcagcgacgccgagctcatcctgtcctccatcggcgcccagccgccgccggagagctatatgtactacgatggcagccggtacagcacggagtgcggcgccgcgagtgtcggcggcgacgggtcgctgtcgtcgctgtccgggtacagccaagcgacagcggagttcgcggtggacggcgccagcgcgagcgcgctgctgcactgcggcggcggcggccccacctcctccggtggtggcgccccgccggcgcccacggcggcggttatcccgtcggtgtcgagctccagcacgctgaactcgatggttggcctaagccccgccgccaccaccaccaccaccaccaccgacgagcagtacggcaacaccaaccacctcccatggctggagctgggcccaagcaccaccaccccctcctcctccgccgccgccgccaccgtcgaccactacggcgccgcgctggacgagctcaagtggtccgattacgtgttcgacggctacaaccaccagctacctccgtacaaccatggcggcatctatggcggcggcgacagcaaggacacggcggtgcacttcgacgcccacgccctcggcaactggtgctagcagctacccctccgtcaaaaaaaaaaaacaatcctagctacaaacctggacatatgcgtgttcagattcatagctagagtttgtttttttatgggacagagtagtaccatctagctaagctcgaatccaccccaaattaggcgcaacgagaccgacggcgagcgatgagccatagcaatgatcagccaatcaattagtaggcgccataattgcatgcaagcatgctgctacgtataaatgtacgtatacctacgggtcaagttttcaacgtgtatacgcgcgtgtgaattaattaagtaggcgcgtacgtaattaagatcatagctgatgtttggtgagaggtttttgggttgtcaaaagaTttttttttttttggtttagtttctttcatttctcttctctcctttgatcgatcgatcgagagatatcgatggatcgggcattagtttgctgcttttgagtgacatgattgtgatgataattaaagtctttaatctcgattgccggtacacgtacaacatgtaaagttcttcatatgatgatatatataaatatatatatagacattgatgctg
More
|
||||||||||
| CDS seq | atggcgaagcgggcgggcggcgcgaggaagaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattgccaagtatggccatggctgctggagctccgtccccaagcttgcaggccttgagagatgtgggaagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattctcacaggaagaagaagacctcatcatccatctccattccatgctaggaaacaagtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaacttctggaactcttacatcaagaagaagcttcgccagcgcggcatcgatccggccacccacaagccgctcgccgaggtcgtcgccgccgccgcctgcgcccgcacgccggcggtgttcagcgacgccgagctcatcctgtcctccatcggcgcccagccgccgccggagagctatatgtactacgatggcagccggtacagcacggagtgcggcgccgcgagtgtcggcggcgacgggtcgctgtcgtcgctgtccgggtacagccaagcgacagcggagttcgcggtggacggcgccagcgcgagcgcgctgctgcactgcggcggcggcggccccacctcctccggtggtggcgccccgccggcgcccacggcggcggttatcccgtcggtgtcgagctccagcacgctgaactcgatggttggcctaagccccgccgccaccaccaccaccaccaccaccgacgagcagtacggcaacaccaaccacctcccatggctggagctgggcccaagcaccaccaccccctcctcctccgccgccgccgccaccgtcgaccactacggcgccgcgctggacgagctcaagtggtccgattacgtgttcgacggctacaaccaccagctacctccgtacaaccatggcggcatctatggcggcggcgacagcaaggacacggcggtgcacttcgacgcccacgccctcggcaactggtgc
More
|
||||||||||
| Protein seq | MAKRAGGARKKLRRGLWSPEEDEKLMNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYLRPDLKRGAFSQEEEDLIIHLHSMLGNKWSQIAAQLPGRTDNEVKNFWNSYIKKKLRQRGIDPATHKPLAEVVAAAACARTPAVFSDAELILSSIGAQPPPESYMYYDGSRYSTECGAASVGGDGSLSSLSGYSQATAEFAVDGASASALLHCGGGGPTSSGGGAPPAPTAAVIPSVSSSSTLNSMVGLSPAATTTTTTTDEQYGNTNHLPWLELGPSTTTPSSSAAAATVDHYGAALDELKWSDYVFDGYNHQLPPYNHGGIYGGGDSKDTAVHFDAHALGNWC |
||||||||||
| Function | Transcription factor MYB61 [UniProtKB/Swiss-Prot:Q8VZQ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0024330 | OsLaMu_07g0024330.02 | Chr07 | 26895399 | 26897557 | + | NAM | ||
| CDS seq | atgtgggaagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattctcacaggaagaagaagacctcatcatccatctccattccatgctaggaaacaagtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaacttctggaactcttacatcaagaagaagcttcgccagcgcggcatcgatccggccacccacaagccgctcgccgaggtcgtcgccgccgccgcctgcgcccgcacgccggcggtgttcagcgacgccgagctcatcctgtcctccatcggcgcccagccgccgccggagagctatatgtactacgatggcagccggtacagcacggagtgcggcgccgcgagtgtcggcggcgacgggtcgctgtcgtcgctgtccgggtacagccaagcgacagcggagttcgcggtggacggcgccagcgcgagcgcgctgctgcactgcggcggcggcggccccacctcctccggtggtggcgccccgccggcgcccacggcggcggttatcccgtcggtgtcgagctccagcacgctgaactcgatggttggcctaagccccgccgccaccaccaccaccaccaccaccgacgagcagtacggcaacaccaaccacctcccatggctggagctgggcccaagcaccaccaccccctcctcctccgccgccgccgccaccgtcgaccactacggcgccgcgctggacgagctcaagtggtccgattacgtgttcgacggctacaaccaccagctacctccgtacaaccatggcggcatctatggcggcggcgacagcaaggacacggcggtgcacttcgacgcccacgccctcggcaactggtgctagcagctacccctccgtcaaaaaaaaaaaacaatcctagctacaaacctggacatatgcgtgttcagattcatagc
More
|
|||||||
| Protein seq | MWEELQAEVDKLPQARPQEGSILTGRRRPHHPSPFHARKQVVSDCGSAAGSDGQRGQELLELLHQEEASPARHRSGHPQAARRGRRRRRLRPHAGGVQRRRAHPVLHRRPAAAGELYVLRWQPVQHGVRRRECRRRRVAVVAVRVQPSDSGVRGGRRQRERAAALRRRRPHLLRWWRPAGAHGGGYPVGVELQHAELDGWPKPRRHHHHHHHRRAVRQHQPPPMAGAGPKHHHPLLLRRRRHRRPLRRRAGRAQVVRLRVRRLQPPATSVQPWRHLWRRRQQGHGGALRRPRPRQLVLAATPPSKKKNNPSYKPGHMRVQIHS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0024330 | OsLaMu_07g0024330.01 | Chr07 | 26895389 | 26897557 | + | NAM | ||
| CDS seq | atggcgaagcgggcgggcggcgcgaggaagaagctgaggagagggctgtggtcgccggaggaggacgagaagctgatgaaccacattgccaagtatggccatggctgctggagctccgtccccaagcttgcaggccttgagagatgtgggaagagctgcaggctgaggtggataaactacctcaggccagacctcaagaggggagcattctcacaggaagaagaagacctcatcatccatctccattccatgctaggaaacaagtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaacttctggaactcttacatcaagaagaagcttcgccagcgcggcatcgatccggccacccacaagccgctcgccgaggtcgtcgccgccgccgcctgcgcccgcacgccggcggtgttcagcgacgccgagctcatcctgtcctccatcggcgcccagccgccgccggagagctatatgtactacgatggcagccggtacagcacggagtgcggcgccgcgagtgtcggcggcgacgggtcgctgtcgtcgctgtccgggtacagccaagcgacagcggagttcgcggtggacggcgccagcgcgagcgcgctgctgcactgcggcggcggcggccccacctcctccggtggtggcgccccgccggcgcccacggcggcggttatcccgtcggtgtcgagctccagcacgctgaactcgatggttggcctaagccccgccgccaccaccaccaccaccaccaccgacgagcagtacggcaacaccaaccacctcccatggctggagctgggcccaagcaccaccaccccctcctcctccgccgccgccgccaccgtcgaccactacggcgccgcgctggacgagctcaagtggtccgattacgtgttcgacggctacaaccaccagctacctccgtacaaccatggcggcatctatggcggcggcgacagcaaggacacggcggtgcacttcgacgcccacgccctcggcaactggtgc
More
|
|||||||
| Protein seq | MAKRAGGARKKLRRGLWSPEEDEKLMNHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYLRPDLKRGAFSQEEEDLIIHLHSMLGNKWSQIAAQLPGRTDNEVKNFWNSYIKKKLRQRGIDPATHKPLAEVVAAAACARTPAVFSDAELILSSIGAQPPPESYMYYDGSRYSTECGAASVGGDGSLSSLSGYSQATAEFAVDGASASALLHCGGGGPTSSGGGAPPAPTAAVIPSVSSSSTLNSMVGLSPAATTTTTTTDEQYGNTNHLPWLELGPSTTTPSSSAAAATVDHYGAALDELKWSDYVFDGYNHQLPPYNHGGIYGGGDSKDTAVHFDAHALGNWC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 26895655 | 26895931 | + | OsLaMu_07g0024330.02 | OsLaMu_07g0024330.02,OsLaMu_07g0024330.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 11.858828 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0634900 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g44090 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0634900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0024600 | RBH | 0.0 | 4.558182 | 5.585224 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0024640 | RBH | 0.0 | 8.877866 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0024510 | RBH | 0.505955 | 31.842272 | 1.301417 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0024440 | RBH | 0.0 | 0.668843 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0024570 | RBH | 0.0 | 23.251972 | 3.759218 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0432800 | RBH | 9.925636 | 6.703817 | 0.1002645 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0025100 | RBH | 0.0 | 1.630418 | 0.351331 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0444400 | RBH | 19.621976 | 0.090034 | 0.8209285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0024340 | RBH | 0.0 | 0.217524 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0024490 | RBH | 0.000000 | 14.261040 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0024420 | RBH | 0.0 | 47.717728 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0024580 | RBH | 0.0 | 1.291684 | 0.130902 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0019220 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G024310 | RBH | 0.0 | 8.961025 | 2.700294 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0024340 | RBH | 0.0 | 1.915725 | 0.714860 |
