Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_07g0023080 | OGI:07070610 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr07:25971954-25973531 | ||||||||
| Gene Symbol | ERF65, OsERF#065, OsERF065, OsERF65, AP2/EREBP#107, AP2/EREBP107 | ||||||||||
| DNA seq | aacgcaatctttccctcgtccaatcagtcatcacaacaaaagcctgaacaaatccctgatgaagaagggcaaattaagaacctaacatcataataaagaattcgtatttacaaaaacaaaactgcactcaaattgatcatatgatgcagagatcatcatcagagattttacaagttacaacatcgattcttcctcccaaataattcactccctcctaaatagaatcaaatgctcaataagctctgaactccattggcatgtcgtcgaagctccagagtccaccaatgttgacggcctcgccgccgaagagcgcgtcgatgttctcgtacgagttgccctgatcgagctggtaacccagctgcatgtagctcggatcgtcgtagaacgcgaattcatcagcgacagccgcttctaccttgtgaatctggtgatcgaatgcgttgtccttgcatcttgatccgtcaagatcgttcagctcgaacgcgtcgagccacgcggcggcggcggcggccatgggcggagaaggatccgtctccgagagcagctcgagcttgacgccgtcgtcgatggcgatggcggcggcggtggcgtcggtgctgctcccagccgagctgacgcggttgttgttggacttggacacggcgtcgctggcgttcaggctcgccggcgacgacgacgacgacctggccttctgctgctgcggcgaatgcttcgccgaagaacgccgtggccgcttcggggcggcggcggcggcgtcggggaagttgaccttggctttcttgccgcggatgcggcgtgcctcgacgtcgtacgccatggcggcctcctcggcggtgccgaacgtgccgagccagacgcggacgcccttgcgggggtccctgatctccgccgcccatttcccccatggccgctgccggatccctcggtatcgcgtcttcctcttcctgctgccgccgaggccgagcttcgtggtgctgaatccggcgagcttgagaccgttcatgtcggattctgcgtgaggtagaagacgacgaagAaaaaaaaagagatcaggttttgaaaaagacacatgctgaatgcctgaacctgacagagtgacaaccctgtgatattcagagatttcatgtgctgatcaagccagcgagaacatctaaattatctagaaatttcaggtgcttatgattttcattttgtaaaaactttacttcttttaaatcttaatacaaacatgcacaagtctttttgtgagtttccgaaaaaagatcaagaagtaaatgaaaaggtgaaaaaaaattgataggaaaaatgaagatttgtacagtaataccaaccttggtcgtcgtgcccgaaacccacatcatcatcatcgccatagtcatcctcaaactcctcaaaatcagcctcaaagtcatcatcatcatcatcgcaatcaacatcgaaatcccaagaactccccttcctcttcttcaagccatcgccaccatctctacccttgccggcgtctccccacaggtcaccggcgttcaccgtccgccgcaccggcaagtgaaggtcgctgagaatggatcctccacacat
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| CDS seq | atgtgtggaggatccattctcagcgaccttcacttgccggtgcggcggacggtgaacgccggtgacctgtggggagacgccggcaaggaatccgacatgaacggtctcaagctcgccggattcagcaccacgaagctcggcctcggcggcagcaggaagaggaagacgcgataccgagggatccggcagcggccatgggggaaatgggcggcggagatcagggacccccgcaagggcgtccgcgtctggctcggcacgttcggcaccgccgaggaggccgccatggcgtacgacgtcgaggcacgccgcatccgcggcaagaaagccaaggtcaacttccccgacgccgccgccgccgccccgaagcggccacggcgttcttcggcgaagcattcgccgcagcagcagaaggccaggtcgtcgtcgtcgtcgccggcgagcctgaacgccagcgacgccgtgtccaagtccaacaacaaccgcgtcagctcggctgggagcagcaccgacgccaccgccgccgccatcgccatcgacgacggcgtcaagctcgagctgctctcggagacggatccttctccgcccatggccgccgccgccgccgcgtggctcgacgcgttcgagctgaacgatcttgacggatcaagatgcaaggacaacgcattcgatcaccagattcacaaggtagaagcggctgtcgctgatgaattcgcgttctacgacgatccgagctacatgcagctgggttaccagctcgatcagggcaactcgtacgagaacatcgacgcgctcttcggcggcgaggccgtcaacattggtggactctggagcttcgacgacatgccaatggagttcagagcttattga
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| Protein seq | MCGGSILSDLHLPVRRTVNAGDLWGDAGKESDMNGLKLAGFSTTKLGLGGSRKRKTRYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFGTAEEAAMAYDVEARRIRGKKAKVNFPDAAAAAPKRPRRSSAKHSPQQQKARSSSSSPASLNASDAVSKSNNNRVSSAGSSTDATAAAIAIDDGVKLELLSETDPSPPMAAAAAAWLDAFELNDLDGSRCKDNAFDHQIHKVEAAVADEFAFYDDPSYMQLGYQLDQGNSYENIDALFGGEAVNIGGLWSFDDMPMEFRAY |
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| Function | Ethylene-responsive transcription factor 1 [UniProtKB/Swiss-Prot:Q6K7E6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0023080 | OsLaMu_07g0023080.01 | Chr07 | 25971954 | 25973531 | - | NAM | ||
| CDS seq | atgtgtggaggatccattctcagcgaccttcacttgccggtgcggcggacggtgaacgccggtgacctgtggggagacgccggcaaggaatccgacatgaacggtctcaagctcgccggattcagcaccacgaagctcggcctcggcggcagcaggaagaggaagacgcgataccgagggatccggcagcggccatgggggaaatgggcggcggagatcagggacccccgcaagggcgtccgcgtctggctcggcacgttcggcaccgccgaggaggccgccatggcgtacgacgtcgaggcacgccgcatccgcggcaagaaagccaaggtcaacttccccgacgccgccgccgccgccccgaagcggccacggcgttcttcggcgaagcattcgccgcagcagcagaaggccaggtcgtcgtcgtcgtcgccggcgagcctgaacgccagcgacgccgtgtccaagtccaacaacaaccgcgtcagctcggctgggagcagcaccgacgccaccgccgccgccatcgccatcgacgacggcgtcaagctcgagctgctctcggagacggatccttctccgcccatggccgccgccgccgccgcgtggctcgacgcgttcgagctgaacgatcttgacggatcaagatgcaaggacaacgcattcgatcaccagattcacaaggtagaagcggctgtcgctgatgaattcgcgttctacgacgatccgagctacatgcagctgggttaccagctcgatcagggcaactcgtacgagaacatcgacgcgctcttcggcggcgaggccgtcaacattggtggactctggagcttcgacgacatgccaatggagttcagagcttattga
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| Protein seq | MCGGSILSDLHLPVRRTVNAGDLWGDAGKESDMNGLKLAGFSTTKLGLGGSRKRKTRYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFGTAEEAAMAYDVEARRIRGKKAKVNFPDAAAAAPKRPRRSSAKHSPQQQKARSSSSSPASLNASDAVSKSNNNRVSSAGSSTDATAAAIAIDDGVKLELLSETDPSPPMAAAAAAWLDAFELNDLDGSRCKDNAFDHQIHKVEAAVADEFAFYDDPSYMQLGYQLDQGNSYENIDALFGGEAVNIGGLWSFDDMPMEFRAY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0023080 | OsLaMu_07g0023080.02 | Chr07 | 25972014 | 25973383 | - | IsoSeq | ||
| CDS seq | atgggggaaatgggcggcggagatcagggacccccgcaagggcgtccgcgtctggctcggcacgttcggcaccgccgaggaggccgccatggcgtacgacgtcgaggcacgccgcatccgcggcaagaaagccaaggtcaacttccccgacgccgccgccgccgccccgaagcggccacggcgttcttcggcgaagcattcgccgcagcagcagaaggccaggtcgtcgtcgtcgtcgccggcgagcctgaacgccagcgacgccgtgtccaagtccaacaacaaccgcgtcagctcggctgggagcagcaccgacgccaccgccgccgccatcgccatcgacgacggcgtcaagctcgagctgctctcggagacggatccttctccgcccatggccgccgccgccgccgcgtggctcgacgcgttcgagctgaacga
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| Protein seq | MGEMGGGDQGPPQGRPRLARHVRHRRGGRHGVRRRGTPHPRQESQGQLPRRRRRRPEAATAFFGEAFAAAAEGQVVVVVAGEPERQRRRVQVQQQPRQLGWEQHRRHRRRHRHRRRRQARAALGDGSFSAHGRRRRRVARRVRAER |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AF | Chr07 | 25972964 | 25973531 | - | OsLaMu_07g0023080.02 | OsLaMu_07g0023080.01,OsLaMu_07g0023080.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.383821 | 39.785713 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0617000 | RBH | 0.0 | 0.174721 | 0.415032 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g42510 | RBH | 0.0 | 0.108156 | 0.098329 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0617000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0023350 | RBH | 0.0 | 72.235535 | 2.789236 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023410 | RBH | 0.161957 | 18.732086 | 1.229833 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023260 | RBH | 0.224999 | 67.157990 | 6.204737 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0023200 | RBH | 0.119406 | 1.634884 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0023290 | RBH | 1.308174 | 48.061508 | 6.878201 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0416700 | RBH | 6.1614455 | 81.158474 | 25.3626655 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0023800 | RBH | 0.025996 | 5.728927 | 0.313232 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0427200 | RBH | 4.252185 | 88.7339095 | 0.6993775 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023070 | RBH | 0.089338 | 1.364282 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0023220 | RBH | 0.0 | 62.557499 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023110 | RBH | 0.0 | 41.761238 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023320 | RBH | 0.140778 | 5.239248 | 0.292077 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0006060 | RBH | 0.147860 | 117.887291 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023040 | RBH | 0.136410 | 10.941728 | 0.567749 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023040 | RBH | 0.695824 | 98.880890 | 0.000000 |
