Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_07g0017990 | OGI:07059780 | 2/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr07:21954351-21960145 | ||||||||
| Gene Symbol | AGP, OsAGP | ||||||||||
| DNA seq | ctatctcggttcaggctctgtcatggacacttcgttgggcgatgccggcgccgccgccaccgccgcgctgctgtccccgctcttccagaagaacgccggcctggacggggcctgcagcgacaccgtgccgctggtgagcatcgtgttcacggccggcatggccggcctctgctccgggttctcctgcacgcagagcagcccaacgtggacgcaacgcgcgatctgccaccccgccgacgctcgctcgctcaccgaccggtccaccaccgcggcgatgtcccccatggtccagtgctcccaaatctgcgttaagtgttacttactacattcgtcagagagagagagagagagagagagagagagagtggcaagtgttagtaagcagtgaggcgagtgaattgttaGggggctcacgatgctgagcagatcggtggactgctccatgttgtacgagccgctgtttcttctccccgtgacgatctcgaggatcagcacgccgaagctgaacacgtctgatttgacggagtagtgaccgcacatcgcgtactctggcgacatatatccactgtaaaaaaacatggacacggttaccaattaccatagccttaaaaaccactactcctcatatgatgtactactgaatgttcttactatgttccgacaacacgattcgtgacgtcctgcgattggtcgcctccgaagagccttgccaaaccgaagtctgaaatcttggggttaaaatcggaatctagcagaacgttgcttgccttgagatcccggtgaatgatcttcaaccgagattcttcgtggagatactgcaaaccccgagcgaccccgtttatgatcttcagcctcttcccccagtctagcgaactgcttctggcaggatctgtcattcaagttgggaagcatcatgacttgcttcatgcaatatattattgtgtacttgtgctaaatagttagcatgaaattgaagattcaccaaaaataatggtatctaggcttctgttgggcacatattcatatacgaccatcttttcatgctcttccacgcaaacaccgataagccgaacaaggttcttgtgttgaagcttcgccaccaaaacgagctcatttttcagttcctctaaaccttgcccagagctctgcgagagcctctttactgctatattttgaccatctgataggcatccctacgtggtaaaatactcctcaaagatatgtacagttgcgaggtttatactctgcagccagttcaatttttaaacgaatatcagtataccttgtaaacaacaccaaatcctcctttgccaattttgttgttttctccaaagttatctgttgcgattcgaagtgtcgataggtcgagaataagtgagtcgatactgtcggtatcctctgaaggagatgcagctacaataacgtagaccacttaggaaataagcacagcaagaatgaatcatctcgttgtatataattacatgatttcggatgttcgtagatttacttggtggtggtccttggggaggtgttttacccggtcttcttctccataaacaaaaactaattgcagccgttgcaagtatggcagcaatcgctggcagcagcacaactgcaagaactttacgggtcctatcactcctattccctgcagatggtttacaaataatagtttaggatgaatattcaccaacctgcgtgttgcgcatactgttatatatattgagtatggttatacacacaggttatatacaactattccctcaaaattattggtttactgtatatttacaatgcatttaagaaatctacaacaagagtgtatgatctaccactctatcctattttaagtgcagctttgggttttttttctaacgtttgactattcgtcttattttttaaaaaaatatgattagtatttttattgttattagatgataaaatataaattaaaaaaaagaagaaatatacacatgatgaaattttatcactaaagaaaaaaaattaggAaaaaaggaaaacgcgggtgggttttctttttgtcgtgatatggaccccaccgattcctccagtccactctgcgtgcgcaataggatccccattcttctgtgccctgaaagaaaaacccaattctctcgtgacggactctcgttttattactgtgctgttattggatccaacgatggttgtaggatgttgtagtcatactaataactgcggatgatcccaattccacgcggagttagcaggttatttcgcgactcttcgggcgagtgctgtacttcttgctggctttaggtgacctgttcttttccaggcactagtacgattgcgactggtctgaaactcaagacgcatttttttgataattagtatttttattgttgttagatgataaaacatgattaatactttatacgtgacttatctttttaatttttttcataatttttttaaataagatggatggtcaaacattagacatggaaaccagggtttgtctttttttaacggatggagtatataatattttaagtggaaaagatatttgacttgactagttgactgacactttcataatactttagcatgaactatctccatctaaaaatataacaacctttagctatgaatttaaacacacagtttatctaaatttatagctaaaagtacttatattttggaatagatggagtatatgatttatttttacaactccgttcgttacatgtgagttatcttttcatttgtcattttaaacatttgtatattgaaccattgattttatacaatttatatagcttaacgtatttattcatcataagaaatactttcataatatataatttatatggtattaaattacaagatttttTAaaaattagttggcaaagattaatttttttaactcagtacaaaattagaacgaatctattagtatattattaacacagctgtgaaaggaggtaccatattcgttgtgggggttagaaattcccagattaatcggagaaaaagaaaaaagaagagtccaagtagaaatacaatttaaaaatagctaaaatttggaattaaaaataagcaatattgaaataagaatccatataagaacccaatacaaaattaatcaaaatttagaataaaaataaaataaaatccgaaattagAaaaaaaaaatgaagagttcaagtaggaatacaatttaaaaataactgaaattcggaattaaaaatAaaaaatattaaaagaagagtctatataagaacccaatacgagattaattaaaatttagaataaaaatAaaataaaatatgtaattagaaaaaaattagaaaaaaagttcagtagtaaaacaatttgaaaataattaaatttaaaaatttaaaacaagcaatattaaaagataggaaaccattatgatattaattaaaatccaaaattagaaaaaaagaaaagagagttcaagtaagaataatattttgaaacaattgaaattgaaaatAaaaaataaaaaaaataaaagaatagtgtatatagaacacaatacgagattaactAaaattcgaaattAaaaataaaataaattcataaaatagaaaaaataaaaataagagctcaaatagaATatataaataactaaaatttgtaatAaaaaaaaataaagactattgaaataagagacaatctagtacacatggcgagattaattaaagttcaaaatatcaaataaaataaaatttaaaagtagagcaatatttgtaagagttcaagtaggaatataatttatgaatAaaaattatctgaataaaaaatatgcaattttcaaataaaaaagaagtccatctataacacaacgatgacaaatgataataaatatggaagaagcaataggcctgtaaaagagtagagtactgacgattgatgggatatctaaaaactataaacaaaaacccaaataaaatcccaataacgattaagaggagtgacgatgggcatgccgttaagcagcatggtcacgatggttggcgggacttatggagagtaaaagtaaacccgaatgataattatgttcgattttgaaaatctcaatgataataaggaggggaggcagcgggcgtacaatagaggagtataatgatgaagccactaaagatttggcgagacttatagaaagtaaaaaaaacacaaacaataattatgtttgatttttaaaatctcaatgacaataaagttctaaagaggatgattagaagtagtggtagatcgagtaagcaaataaaaatgtgtcaaagtagtaaggggtagcgtttggcgtgactttttaaatactactccctccgtcctataatataagggattttgagtttttgtttgtaaagtttgaccactcgtcttattcaaaaattttgaaattattgtttattttatttgtgacttactttattatccacagtattttaagcacaacTttttattttttatatttgcaaccaaattttgaataagacgagtggtcaaacgttgcaagcaaaaactcaaaatcccttatattgtgcgacagagggagtataaaataatttgaatcacaggaatgataattttaaataaaatcatttataaaaaatagataattttaaaTtgatgctagccgcgcaattgcgtgggacgtctaactagttaatttgaaaaggagagagtagggatagtggttcatcgatcatacgaggttaagatcaaaattcataagggaagagaattacgaagtctagtattcctctttgaaacgtgcaaattcgtcaggtcaattaattcccaaggattactcatcactcacctccagtggtgcccggtacaacgagcggcggcggtttcgacggcgctggtgccggcgccggcaccgtcaaaagtgcggcagcgtcagccggcagctgcagcatggaagggacaccggagaacgagtagagctcaaccctcatggtgcacctggcgccgacaatcctagcgccctgcgtgttcggctcaaacgtctgccaccactggcccaccatgtcgtcgaggcaccgacgacactgtgccgacgataggtcggatgtgcactgcgccatggagtaaatcttggggaactgggcgttgaaaccctccacctcccccgttgcgaaccgattcgtcgagttgtctgccgcgtaagcggcggtggcgatgaggaggccggtaacaacccgattgtagcggccgatgtcgccggagacgttcccggggttgtagagatcgaccaagccggagttgtccgtggaggagaggaaattcatgttagagaaacggaggtagcaggtgtcgcaggcgatggacacctccttgctgtaagggcacagctgccgcgcgtcctggaagatggtgccgacgcagtcggcgcagacggaggcgttgatgtccccgcggcaaaacgagagggcgaaggtgctttctggaattgtgaaggcggcgcctgagtcgttcttggggaaggcagcagcgagctggacgaggttggtctggtaggtaccaataccattctccgagtagaaggaataggcacttcctggaacggtgctgatggcgccggagacaaagaaaaccgaggagaagacgttcttgggcagggcagcggcgagcaggttcaggttggcttggtaggtgccgttcgccgaatagttgccggtgtccccgcatatctgccacgggggctgggcagcgatcagcggtgggagcaagagcgcggcgaggagcggtaggacatgaactgagccgctgtgcat
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| CDS seq | atgcacagcggctcagttcatgtcctaccgctcctcgccgcgctcttgctcccaccgctgatcgctgcccagcccccgtggcagatatgcggggacaccggcaactattcggcgaacggcacctaccaagccaacctgaacctgctcgccgctgccctgcccaagaacgtcttctcctcggttttctttgtctccggcgccatcagcaccgttccaggaagtgcctattccttctactcggagaatggtattggtacctaccagaccaacctcgtccagctcgctgctgccttccccaagaacgactcaggcgccgccttcacaattccagaaagcaccttcgccctctcgttttgccgcggggacatcaacgcctccgtctgcgccgactgcgtcggcaccatcttccaggacgcgcggcagctgtgcccttacagcaaggaggtgtccatcgcctgcgacacctgctacctccgtttctctaacatgaatttcctctcctccacggacaactccggcttggtcgatctctacaaccccgggaacgtctccggcgacatcggccgctacaatcgggttgttaccggcctcctcatcgccaccgccgcttacgcggcagacaactcgacgaatcggttcgcaacgggggaggtggagggtttcaacgcccagttccccaagatttactccatggcgcagtgcacatccgacctatcgtcggcacagtgtcgtcggtgcctcgacgacatggtgggccagtggtggcagacgtttgagccgaacacgcagggcgctaggattgtcggcgccaggtgcaccatgagggttgagctctactcgttctccggtgtcccttccatgctgcagctgccggctgacgctgccgcacttttgacggtgccggcgccggcaccagcgccgtcgaaaccgccgccgctcgttgtaccgggcaccactggagggaataggagtgataggacccgtaaagttcttgcagttgtgctgctgccagcgattgctgccatacttgcaacggctgcaattagtttttgtttatggagaagaagaccgggtaaaacacctccccaaggaccaccaccaactgcatctccttcagaggataccgacagtatcgactcacttattctcgacctatcgacacttcgaatcgcaacagataactttggagaaaacaacaaaattggcaaaggaggatttggtgttgtttacaagggatgcctatcagatggtcaaaatatagcagtaaagaggctctcgcagagctctgggcaaggtttagaggaactgaaaaatgagctcgttttggtggcgaagcttcaacacaagaaccttgttcggcttatcggtgtttgcgtggaagagcatgaaaagatggtcgtatatgaatatgtgcccaacagaagcctagataccattatttttgatcctgccagaagcagttcgctagactgggggaagaggctgaagatcataaacggggtcgctcggggtttgcagtatctccacgaagaatctcggttgaagatcattcaccgggatctcaaggcaagcaacgttctgctagattccgattttaaccccaagatttcagacttcggtttggcaaggctcttcggaggcgaccaatcgcaggacgtcacgaatcgtgttgtcggaacatatggatatatgtcgccagagtacgcgatgtgcggtcactactccgtcaaatcagacgtgttcagcttcggcgtgctgatcctcgagatcgtcacggggagaagaaacagcggctcgtacaacatggagcagtccaccgatctgctcagcatcatttgggagcactggaccatgggggacatcgccgcggtggtggaccggtcggtgagcgagcgagcgtcggcggggtggcagatcgcgcgttgcgtccacgttgggctgctctgcgtgcaggagaacccggagcagaggccggccatgccggccgtgaacacgatgctcaccagcggcacggtgtcgctgcaggccccgtccaggccggcgttcttctggaagagcggggacagcagcgcggcggtggcggcggcgccggcatcgcccaacgaagtgtccatgacagagcctgaaccgagatag
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| Protein seq | MHSGSVHVLPLLAALLLPPLIAAQPPWQICGDTGNYSANGTYQANLNLLAAALPKNVFSSVFFVSGAISTVPGSAYSFYSENGIGTYQTNLVQLAAAFPKNDSGAAFTIPESTFALSFCRGDINASVCADCVGTIFQDARQLCPYSKEVSIACDTCYLRFSNMNFLSSTDNSGLVDLYNPGNVSGDIGRYNRVVTGLLIATAAYAADNSTNRFATGEVEGFNAQFPKIYSMAQCTSDLSSAQCRRCLDDMVGQWWQTFEPNTQGARIVGARCTMRVELYSFSGVPSMLQLPADAAALLTVPAPAPAPSKPPPLVVPGTTGGNRSDRTRKVLAVVLLPAIAAILATAAISFCLWRRRPGKTPPQGPPPTASPSEDTDSIDSLILDLSTLRIATDNFGENNKIGKGGFGVVYKGCLSDGQNIAVKRLSQSSGQGLEELKNELVLVAKLQHKNLVRLIGVCVEEHEKMVVYEYVPNRSLDTIIFDPARSSSLDWGKRLKIINGVARGLQYLHEESRLKIIHRDLKASNVLLDSDFNPKISDFGLARLFGGDQSQDVTNRVVGTYGYMSPEYAMCGHYSVKSDVFSFGVLILEIVTGRRNSGSYNMEQSTDLLSIIWEHWTMGDIAAVVDRSVSERASAGWQIARCVHVGLLCVQENPEQRPAMPAVNTMLTSGTVSLQAPSRPAFFWKSGDSSAAVAAAPASPNEVSMTEPEPR |
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| Function | Cysteine-rich receptor-like protein kinase 6 [UniProtKB/Swiss-Prot:Q0D5R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0017990 | OsLaMu_07g0017990.01 | Chr07 | 21954351 | 21960145 | - | NAM | ||
| CDS seq | atgcacagcggctcagttcatgtcctaccgctcctcgccgcgctcttgctcccaccgctgatcgctgcccagcccccgtggcagatatgcggggacaccggcaactattcggcgaacggcacctaccaagccaacctgaacctgctcgccgctgccctgcccaagaacgtcttctcctcggttttctttgtctccggcgccatcagcaccgttccaggaagtgcctattccttctactcggagaatggtattggtacctaccagaccaacctcgtccagctcgctgctgccttccccaagaacgactcaggcgccgccttcacaattccagaaagcaccttcgccctctcgttttgccgcggggacatcaacgcctccgtctgcgccgactgcgtcggcaccatcttccaggacgcgcggcagctgtgcccttacagcaaggaggtgtccatcgcctgcgacacctgctacctccgtttctctaacatgaatttcctctcctccacggacaactccggcttggtcgatctctacaaccccgggaacgtctccggcgacatcggccgctacaatcgggttgttaccggcctcctcatcgccaccgccgcttacgcggcagacaactcgacgaatcggttcgcaacgggggaggtggagggtttcaacgcccagttccccaagatttactccatggcgcagtgcacatccgacctatcgtcggcacagtgtcgtcggtgcctcgacgacatggtgggccagtggtggcagacgtttgagccgaacacgcagggcgctaggattgtcggcgccaggtgcaccatgagggttgagctctactcgttctccggtgtcccttccatgctgcagctgccggctgacgctgccgcacttttgacggtgccggcgccggcaccagcgccgtcgaaaccgccgccgctcgttgtaccgggcaccactggagggaataggagtgataggacccgtaaagttcttgcagttgtgctgctgccagcgattgctgccatacttgcaacggctgcaattagtttttgtttatggagaagaagaccgggtaaaacacctccccaaggaccaccaccaactgcatctccttcagaggataccgacagtatcgactcacttattctcgacctatcgacacttcgaatcgcaacagataactttggagaaaacaacaaaattggcaaaggaggatttggtgttgtttacaagggatgcctatcagatggtcaaaatatagcagtaaagaggctctcgcagagctctgggcaaggtttagaggaactgaaaaatgagctcgttttggtggcgaagcttcaacacaagaaccttgttcggcttatcggtgtttgcgtggaagagcatgaaaagatggtcgtatatgaatatgtgcccaacagaagcctagataccattatttttgatcctgccagaagcagttcgctagactgggggaagaggctgaagatcataaacggggtcgctcggggtttgcagtatctccacgaagaatctcggttgaagatcattcaccgggatctcaaggcaagcaacgttctgctagattccgattttaaccccaagatttcagacttcggtttggcaaggctcttcggaggcgaccaatcgcaggacgtcacgaatcgtgttgtcggaacatatggatatatgtcgccagagtacgcgatgtgcggtcactactccgtcaaatcagacgtgttcagcttcggcgtgctgatcctcgagatcgtcacggggagaagaaacagcggctcgtacaacatggagcagtccaccgatctgctcagcatcatttgggagcactggaccatgggggacatcgccgcggtggtggaccggtcggtgagcgagcgagcgtcggcggggtggcagatcgcgcgttgcgtccacgttgggctgctctgcgtgcaggagaacccggagcagaggccggccatgccggccgtgaacacgatgctcaccagcggcacggtgtcgctgcaggccccgtccaggccggcgttcttctggaagagcggggacagcagcgcggcggtggcggcggcgccggcatcgcccaacgaagtgtccatgacagagcctgaaccgagatag
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| Protein seq | MHSGSVHVLPLLAALLLPPLIAAQPPWQICGDTGNYSANGTYQANLNLLAAALPKNVFSSVFFVSGAISTVPGSAYSFYSENGIGTYQTNLVQLAAAFPKNDSGAAFTIPESTFALSFCRGDINASVCADCVGTIFQDARQLCPYSKEVSIACDTCYLRFSNMNFLSSTDNSGLVDLYNPGNVSGDIGRYNRVVTGLLIATAAYAADNSTNRFATGEVEGFNAQFPKIYSMAQCTSDLSSAQCRRCLDDMVGQWWQTFEPNTQGARIVGARCTMRVELYSFSGVPSMLQLPADAAALLTVPAPAPAPSKPPPLVVPGTTGGNRSDRTRKVLAVVLLPAIAAILATAAISFCLWRRRPGKTPPQGPPPTASPSEDTDSIDSLILDLSTLRIATDNFGENNKIGKGGFGVVYKGCLSDGQNIAVKRLSQSSGQGLEELKNELVLVAKLQHKNLVRLIGVCVEEHEKMVVYEYVPNRSLDTIIFDPARSSSLDWGKRLKIINGVARGLQYLHEESRLKIIHRDLKASNVLLDSDFNPKISDFGLARLFGGDQSQDVTNRVVGTYGYMSPEYAMCGHYSVKSDVFSFGVLILEIVTGRRNSGSYNMEQSTDLLSIIWEHWTMGDIAAVVDRSVSERASAGWQIARCVHVGLLCVQENPEQRPAMPAVNTMLTSGTVSLQAPSRPAFFWKSGDSSAAVAAAPASPNEVSMTEPEPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0540100 | SBH | 1.327324 | 1.509061 | 4.121221 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35260 | SBH | 1.072291 | 1.263995 | 0.368483 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0540100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0017860 | SBH | 0.142134 | 0.000000 | 1.056033 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0024250 | SBH | 5.327213 | 0.0 | 4.032944 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018060 | SBH | 0.442510 | 1.409271 | 1.339222 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0018060 | SBH | 0.0 | 0.679471 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018080 | SBH | 0.0 | 2.471582 | 5.719823 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0351400 | SBH | 0.309316 | 19.3094625 | 2.687566 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018260 | SBH | 0.217382 | 0.298519 | 0.167195 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0358400 | SBH | 1.1841445 | 13.820534 | 1.580925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017940 | SBH | 0.026354 | 0.135489 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0018020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017620 | SBH | 0.283242 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018310 | SBH | 0.0 | 0.519603 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0018630 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G023900 | SBH | 0.445050 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0018030 | SBH | 0.0 | 0.0 | 0.0 |
