Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_07g0017960 | OGI:07059730 | 7/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr07:21910656-21913195 | ||||||||
| Gene Symbol | AGP, OsAGP | ||||||||||
| DNA seq | TCAGACTTCAGGGGACTCACATCGGAGCGGTCCTGGTGGAGGTGTTtttttctggtcttttcctcctccagaaacaaaagccaattacagtgactgccagtatggcagcaactataggcattacaattgcaagaactttacctgctccgtttctccttttccctgtagattatactccgtattacacatgggAaaaaagtagtatggttgtggtgaaagattctcaagacacggttagcagaaagcaaaccAggaggaactgatgatgagttcacacttgaaaagtaagatagcgattgcagattctttgaaaTtttccatgtgatagagattgtgtgaaatatttgcctccgaaaactcaaattttgtgtaaaaattgccatttggtgttgaacagtaagcaactagcaaggatagcctttcagataagctaacccagcattctgcaagatcattattgcacgcctatttttattttgggtctaaaatggcaTtccagataggtaatgaatcatgatatcacattggcagtttggcactggcctatcaatgttatgcattatggtcataacactcactgttagcttttcttgactagtgctccactctaattcccattgcttgagtgAaatgcataaactaactaatgttaataacaatatctagtcgaaactacaaactaccaatttgacaatctaaagttggtaacagctgtatgcctgtgtttatatccccatatataaacatgactacaagtcatagcttctagattgccattgcacatgtggTgctgcctgcagttactgaaTatagaacagtaagcagaagacgaaaagatagacaactgttcccaaacaaacagaaaaatacatgacacaagattcttctcagaaaagatggtgtaaattttcagagtaagaagagagtgcctttttttttccttgcattcacttaactactagctgatcaaaCaactgaaagttaggcgactgacagataattgaatcacatacagagaaacCaagcacgtattactagtatcatattgcacaattttgtcttgtggattaggttgatttcgagattatattCcctaaataaaaatgtctctaAGgaattagtcggtggaaaaagtagacttagtcaactgtatgataggAgtactagtatacactagtacGgaatagtagtgaactatacgctaactagcatgacagcaacaggtctggatcgaatcatggaaaatctaggcattcatctagttaataccaagagaaattcggacgtttcttgcttaaactatgcattagttggcgtgatgaaaattctgaactgtacttaacctaaagggaaaattgaaaccatgtcattataattttgcaaaattggaaccatgccgtcctgacccatgtgggtcctacatgtcattgaaataccgatggtatatctcaaactttgcaaaattataatatcattagttaagctatcatacgtccagcatcacACTaggtacaataattttcagggaacaaaagatggaagcagagtactcctaattaatatgcatagtagtAaagtcagctaagctaacctcctgtagtgcccggcacagcaggtggcttccctgccggcgccggcgccggcgatggcgacggcgcgacggcctcggcttgcagctgcagcatggaagggacgttgtagaacgagtacagctcgacccgcatgttgcagcgcgcgccgacgctcctggcgccctgcgtgttgggctcgaacgtctgccaccaccgcgccaccatggcgccgaggcacagcccgcactgcgccggcgacaggtccggcgagcactgcgccatggcgtagatcTtggggaactgggCgtcgaacccgaccatcacccccgtcgcgaacagcctggacgacgcgttggtgttgcccgccgcgtacctggccgtggcgttgaggaggcccgtcaccgcgcggtcgtagcggccgacgtcgccggagacagtCccggtgttgtagaggtcgacgacgccggagttgtcggcggaggagaggaagtcgaggttggagaagcggaggtagcagctgtcgtagacgatggacacctccttgcggtaGgggcacagctgctgcgcgtcctggaagatggtgccgacgcagtcggcgcaggccgaggcgttgatgtcgccgcggcagagcgcgagcgcgtagacggcgtccggcacggcgccgacggcgcccgaggcgaagaggcggccgccgccggtgccggaggagacgttcttgTggagcgccgcggcgagctgcttgaggttggcttggtaggtgctgttcgccgtgtagttgccgttctccccgcatatctcccacggctggccggcgatcagcgccgggagcgccgcgaggagaagcagcgcggcatggacacggaggaggaggactgatccgcggcacatggcggagcagagagctagctgcagtgcagaggaagaagaggagaagaagaaggtggtttgctcttgctctcgaatcactct
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| CDS seq | atgtgccgcggatcagtcctcctcctccgtgtccatgccgcgctgcttctcctcgcggcgctcccggcgctgatcgccggccagccgtgggagatatgcggggagaacggcaactacacggcgaacagcacctaccaagccaacctcaagcagctcgccgcggcgctccAcaagaacgtctcctccggcaccggcggcggccgcctcttcgcctcgggcgccgtcggcgccgtgccggacgccgtctacgcgctcgcgctctgccgcggcgacatcaacgcctcggcctgcgccgactgcgtcggcaccatcttccaggacgcgcagcagctgtgcccCtaccgcaaggaggtgtccatcgtctacgacagctgctacctccgcttctccaacctcgacttcctctcctccgccgacaactccggcgtcgtcgacctctacaacaccggGactgtctccggcgacgtcggccgctacgaccgcgcggtgacgggcctcctcaacgccacggccaggtacgcggcgggcaacaccaacgcgtcgtccaggctgttcgcgacgggggtgatggtcgggttcgacGcccagttccccaAgatctacgccatggcgcagtgctcgccggacctgtcgccggcgcagtgcgggctgtgcctcggcgccatggtggcgcggtggtggcagacgttcgagcccaacacgcagggcgccaggagcgtcggcgcgcgctgcaacatgcgggtcgagctgtactcgttctacaacgtcccttccatgctgcagctgcaagccgaggccgtcgcgccgtcgccatcgccggcgccggcgccggcagggaagccacctgctgtgccgggcactacaggaggaggaaaagaccagaaaaaAACACCTCCACCAGGACCGCTCCGATGTGAGTCCCCTGAAGTCTGA
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| Protein seq | MCRGSVLLLRVHAALLLLAALPALIAGQPWEICGENGNYTANSTYQANLKQLAAALHKNVSSGTGGGRLFASGAVGAVPDAVYALALCRGDINASACADCVGTIFQDAQQLCPYRKEVSIVYDSCYLRFSNLDFLSSADNSGVVDLYNTGTVSGDVGRYDRAVTGLLNATARYAAGNTNASSRLFATGVMVGFDAQFPKIYAMAQCSPDLSPAQCGLCLGAMVARWWQTFEPNTQGARSVGARCNMRVELYSFYNVPSMLQLQAEAVAPSPSPAPAPAGKPPAVPGTTGGGKDQKKTPPPGPLRCESPEV |
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| Function | Cysteine-rich receptor-like protein kinase 10 [UniProtKB/Swiss-Prot:Q0D5R2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0017960 | OsLaMu_07g0017960.01 | Chr07 | 21910656 | 21913195 | - | NAM | ||
| CDS seq | atgtgccgcggatcagtcctcctcctccgtgtccatgccgcgctgcttctcctcgcggcgctcccggcgctgatcgccggccagccgtgggagatatgcggggagaacggcaactacacggcgaacagcacctaccaagccaacctcaagcagctcgccgcggcgctccAcaagaacgtctcctccggcaccggcggcggccgcctcttcgcctcgggcgccgtcggcgccgtgccggacgccgtctacgcgctcgcgctctgccgcggcgacatcaacgcctcggcctgcgccgactgcgtcggcaccatcttccaggacgcgcagcagctgtgcccCtaccgcaaggaggtgtccatcgtctacgacagctgctacctccgcttctccaacctcgacttcctctcctccgccgacaactccggcgtcgtcgacctctacaacaccggGactgtctccggcgacgtcggccgctacgaccgcgcggtgacgggcctcctcaacgccacggccaggtacgcggcgggcaacaccaacgcgtcgtccaggctgttcgcgacgggggtgatggtcgggttcgacGcccagttccccaAgatctacgccatggcgcagtgctcgccggacctgtcgccggcgcagtgcgggctgtgcctcggcgccatggtggcgcggtggtggcagacgttcgagcccaacacgcagggcgccaggagcgtcggcgcgcgctgcaacatgcgggtcgagctgtactcgttctacaacgtcccttccatgctgcagctgcaagccgaggccgtcgcgccgtcgccatcgccggcgccggcgccggcagggaagccacctgctgtgccgggcactacaggaggaggaaaagaccagaaaaaAACACCTCCACCAGGACCGCTCCGATGTGAGTCCCCTGAAGTCTGA
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| Protein seq | MCRGSVLLLRVHAALLLLAALPALIAGQPWEICGENGNYTANSTYQANLKQLAAALHKNVSSGTGGGRLFASGAVGAVPDAVYALALCRGDINASACADCVGTIFQDAQQLCPYRKEVSIVYDSCYLRFSNLDFLSSADNSGVVDLYNTGTVSGDVGRYDRAVTGLLNATARYAAGNTNASSRLFATGVMVGFDAQFPKIYAMAQCSPDLSPAQCGLCLGAMVARWWQTFEPNTQGARSVGARCNMRVELYSFYNVPSMLQLQAEAVAPSPSPAPAPAGKPPAVPGTTGGGKDQKKTPPPGPLRCESPEV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.735047 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0540100 | RBH | 1.327324 | 1.509061 | 4.121221 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35580 | RBH | 0.903028 | 1.044511 | 1.059144 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0540100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018150 | SBH | 0.183288 | 4.635837 | 1.602371 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018080 | RBH | 0.032731 | 2.833734 | 0.732939 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018060 | RBH | 0.442510 | 1.409271 | 1.339222 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017950 | RBH | 0.0 | 0.072851 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018080 | RBH | 0.0 | 2.471582 | 5.719823 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0351400 | SBH | 0.309316 | 19.3094625 | 2.687566 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018580 | RBH | 0.116475 | 0.405923 | 0.942327 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0358400 | SBH | 1.1841445 | 13.820534 | 1.580925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017840 | RBH | 0.028188 | 0.153012 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017990 | RBH | 0.117919 | 2.539883 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017870 | RBH | 1.706165 | 16.171770 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018160 | RBH | 0.131439 | 1.049852 | 0.357616 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017890 | RBH | 0.056252 | 0.647091 | 1.647791 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017900 | SBH | 0.538636 | 1.084484 | 1.779945 |
