Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_07g0013830 | OGI:07046960 | 14/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr07:17190062-17193002 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcagtttctaccagattgttttgtgaaggaagcccgaatccggtcgtacaagcggtcagaaaccaagaaacaaatgattctccatctctgcatgaacaagaaggtgcataagacaacccagagaccaactacccatcctatgcccatgccaaggtacaggaaaaccccatcgctcaaacttttgtcttcatcaacggcgtctggcagtaatttcgacgattccgaacaattccttgagagtggtgggccacaaagtcccggattgccgatatatatagatgcctgatcatcaagtgttcgtagctgattaccataaggtatttgtcctgacaaattgttataggacaaattcaagtggctcagtgacgcaggggctgataaacttgtaggaatttggccaaaaagttcattgtgtgacaggtccaaagattctattgattgtagtgctccaatgtttgttggtattaccccgcttagatgattccaagataggttcaagtttttcagtgcagtgagcatgctaatatcctcaggaatatggcctgttaaattgttgcaggacagatcaataTttaccatataaatgattccgcttctaaattcaagctgttgccctttggtgacaaccaacaaactctcattagtggcactagtaatgtggctgaagtcaggtccagattcttcaaaattgtatggtccaagattagccaacataattactctaacatttgacgtcgagagtgaccatccgtaatagacaatatatgaaagtgaatcattgtcagcaggcctgtgggacattgccgtcaaattcactagtgaccatggtattgcccctgagaagctgttataagctaggtccagatactgaagctccttcatcttggtaagctggggagggatttcaccggtgaacatatttgatcgtaaccgtaaaaagtgctaacgctgacaactcatctatccatgctggtaagctcccagaaaatcgattaaatgcgagatcaagaaatattaggttttggcacttttggagaaataaagggaacattccagaaagattattgtcatttaagttcaacataatgatgttttggtgaacacctagcaggtcggcccttgacgtgttgcctgcttgtgagatattcaaacaattgggaaatggcccttgtagtagatttgcagataggtctacaaattctagatacttcagttgacaaaaagattgtggaattttaccagacaatgaattttcgaagagaataagggactctagaaatggagctccaaaatcaagtggtagtggccctgatagaTtattttttgagaggtcaaggtatgttaaattttctggaaccttttgtaattgaccttccagaaGgttgttactgaaatctattacttcggctaccattttttcgttcatcattgctggtagcactccactaatctgatttcctgatagaacaaaatatctagtgttggagaatgtggtccagaaccaatcaggtatagaatcagctatgcttgtatttgaaatatccatcatagtaatcgtatcttgagaccttagccatcctgggaatttaggccctagtccacaagattttaaaccggctatcatcagtttgaaaggaggaacccaattatggtcagccactattgctagagtgttatgggataaccctagaattttcaaactagctagattagccaagtggaattgtgtaatcacgccatggaagttgttggaatcaagctctagacttgtgaggtttgtgagttctccaatccaaagtggtatatctcctgagattttgttatcactgatacgaaggttataaagacttcccaatcgtcccttttgagctggcaagcttccctctaaattgttcccgtacaattctagtacgtacaatccattatcaggcaatttatctaacaatttttctatgtcaccactgatattattctgtgcaaggtacagaaacttcaagttgcttagtctcttgaatgtggttggcagccctgtgagatcgttgaagttaaggcccaaatttacaagggatgtggaatttcccatatactcggggaggataccctgaagcccacaactttctagataaattgtttcaagtctaggaaaatcccaaaatggccaaaagagtttttcgactgcaacaggtgagtggaaggggttaccacttaggtcaattacctccagagatgtaaggttcatgtgtagcggaggagggatagcgttgcgtaggccacagttgcgaaggctcaagtgctgtagagatggaagcatgttgagagagtgagcccagtcgaatgctgtgctgaggttcacgccgcccaagtagagatgctgtaggtttgccaagcgtgacaaccacgcaagattcgtcgagtagagtcctggacccttgtagcttgtgagatccagatcgatcaacctggagaggttgccgagatgaggaggaaccagcccactgaagttggcatcaccgagggtgagatgccgcatgctcttgagttcaccgaagagctccgggatcggctcacctccgaagtcattgccagcaaggctcatggacttgagatgccgtagagcaagcagggatgggcttatcttacctccgattccagcgtactcgagcgtaagcgtcgcgacatggccgtttcgcttgctgcatacgacgccttcccattcgtcgcagcagttgtcgccttgccaggatgccaggtagttgctgggatcttggagtcctgctttgaggtcaagcagagcgtcccgctcgcgggcgatgcagggattgcttggtggaagtgcaggtgcaggtgcagtttgaggaggaggggaggaggagcctgcttggagtaacagaaggcaccatgttgttgctatgactggaaacacaagatttggcctggtcat
More
|
||||||||||
| CDS seq | atgaccaggccaaatcttgtgtttccagtcatagcaacaacatggtgccttctgttactccaagcaggctcctcctcccctcctcctcaaactgcacctgcacctgcacttccaccaagcaatccctgcatcgcccgcgagcgggacgctctgcttgacctcaaagcaggactccaagatcccagcaactacctggcatcctggcaaggcgacaactgctgcgacgaatgggaaggcgtcgtatgcagcaagcgaaacggccatgtcgcgacgcttacgctcgagtacgctggaatcggaggtaagataagcccatccctgcttgctctacggcatctcaagtccatgagccttgctggcaatgacttcggaggtgagccgatcccggagctcttcggtgaactcaagagcatgcggcatctcaccctcggtgatgccaacttcagtgggctggttcctcctcatctcggcaacctctccaggttgatcgatctggatctcacaagctacaagggtccaggactctactcgacgaatcttgcgtggttgtcacgcttggcaaacctacagcatctctacttgggcggcgtgaacctcagcacagcattcgactgggctcactctctcaacatgcttccatctctacagcacttgagccttcgcaactgtggcctacgcaacgctatccctcctccgctacacatgaaccttacatctctggaggtaattgacctaagtggtaaccccttccactcacctgttgcagtcgaaaaactcttttggccattttgggattttcctagacttgaaacaatttatctagaaagttgtgggcttcagggtatcctccccgagtatatgggaaattccacatcccttgtaaatttgggccttaacttcaacgatctcacagggctgccaaccacattcaagagactaagcaacttgaagtttctgtaccttgcacagaataatatcagtggtgacatagaaaaattgttagataaattgcctgataatggattgtacgtactagaattgtacgggaacaatttagagggaagcttgccagctcaaaagggacgattgggaagtctttataaccttcgtatcagtgataacaaaatctcaggagatataccactttggattggagaactcacaaacctcacaagtctagagcttgattccaacaacttccatggcgtgattacacaattccacttggctaatctagctagtttgaaaattctagggttatcccataacactctagcaatagtggctgaccataattgggttcctcctttcaaactgatgatagccggtttaaaatcttgtggactagggcctaaattcccaggatggctaaggtctcaagatacgattactatgatggatatttcaaatacaagcatagctgattctatacctgattggttctggaccacattctccaacactagatattttgttctatcaggaaatcagattagtggagtgctaccagcaatgatgaacgaaaaaatggtagccgaagtaatagatttcagtaacaacCttctggaaggtcaattacaaaaggttccagaaaatttaacataccttgacctctcaaaaaataAtctatcagggccactaccacttgattttggagctccatttctagagtcccttattctcttcgaaaattcattgtctggtaaaattccacaatctttttgtcaactgaagtatctagaatttgtagacctatctgcaaatctactacaagggccatttcccaattgtttgaatatctcacaagcaggcaacacgtcaagggccgacctgctaggtgttcaccaaaacatcattatgttgaacttaaatgacaataatctttctggaatgttccctttatttctccaaaagtgccaaaacctaatatttcttgatctcgcatttaatcgattttctgggagcttaccagcatggatagatgagttgtcagcgttagcactttttacgcttaccaagatgaaggagcttcagtatctggacctagcttataacagcttctcaggggcaataccatggtcactagtgaatttgacggcaatgtcccacaggcctgctgacaatgattcactttcatatattgtctattacggatggtcactctcgacgtcaaatgttagagtaattatgttggctaatcttggaccatacaattttgaagaatctggacctgacttcagccacattactagtgccactaatgagagtttgttggttgtcaccaaagggcaacagcttgaatttagaagcggaatcatttatatggtaaAtattgatctgtcctgcaacaatttaacaggccatattcctgaggatattagcatgctcactgcactgaaaaacttgaacctatcttggaatcatctaagcggggtaataccaacaaacattggagcactacaatcaatagaatctttggacctgtcacacaatgaactttttggccaaattcctacaagtttatcagcccctgcgtcactgagccacttgaatttgtcctataacaatttgtcaggacaaataccttatggtaatcagctacgaacacttgatgatcaggcatctatatatatcggcaatccgggactttgtggcccaccactctcaaggaattgttcggaatcgtcgaaattactgccagacgccgttgatgaagacaaaagtttgagcgatggggttttcctgtaccttggcatgggcataggatgggtagttggtctctgggttgtcttatgcaccttcttgttcatgcagagatggagaatcatttgtttcttggtttctgaccgcttgtacgaccggattcgggcttccttcacaaaacaatctggtagaaactga
More
|
||||||||||
| Protein seq | MTRPNLVFPVIATTWCLLLLQAGSSSPPPQTAPAPALPPSNPCIARERDALLDLKAGLQDPSNYLASWQGDNCCDEWEGVVCSKRNGHVATLTLEYAGIGGKISPSLLALRHLKSMSLAGNDFGGEPIPELFGELKSMRHLTLGDANFSGLVPPHLGNLSRLIDLDLTSYKGPGLYSTNLAWLSRLANLQHLYLGGVNLSTAFDWAHSLNMLPSLQHLSLRNCGLRNAIPPPLHMNLTSLEVIDLSGNPFHSPVAVEKLFWPFWDFPRLETIYLESCGLQGILPEYMGNSTSLVNLGLNFNDLTGLPTTFKRLSNLKFLYLAQNNISGDIEKLLDKLPDNGLYVLELYGNNLEGSLPAQKGRLGSLYNLRISDNKISGDIPLWIGELTNLTSLELDSNNFHGVITQFHLANLASLKILGLSHNTLAIVADHNWVPPFKLMIAGLKSCGLGPKFPGWLRSQDTITMMDISNTSIADSIPDWFWTTFSNTRYFVLSGNQISGVLPAMMNEKMVAEVIDFSNNLLEGQLQKVPENLTYLDLSKNNLSGPLPLDFGAPFLESLILFENSLSGKIPQSFCQLKYLEFVDLSANLLQGPFPNCLNISQAGNTSRADLLGVHQNIIMLNLNDNNLSGMFPLFLQKCQNLIFLDLAFNRFSGSLPAWIDELSALALFTLTKMKELQYLDLAYNSFSGAIPWSLVNLTAMSHRPADNDSLSYIVYYGWSLSTSNVRVIMLANLGPYNFEESGPDFSHITSATNESLLVVTKGQQLEFRSGIIYMVNIDLSCNNLTGHIPEDISMLTALKNLNLSWNHLSGVIPTNIGALQSIESLDLSHNELFGQIPTSLSAPASLSHLNLSYNNLSGQIPYGNQLRTLDDQASIYIGNPGLCGPPLSRNCSESSKLLPDAVDEDKSLSDGVFLYLGMGIGWVVGLWVVLCTFLFMQRWRIICFLVSDRLYDRIRASFTKQSGRN |
||||||||||
| Function | Receptor-like protein EIX2 [UniProtKB/Swiss-Prot:Q6JN46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0013830 | OsLaMu_07g0013830.01 | Chr07 | 17190062 | 17193002 | - | NAM | ||
| CDS seq | atgaccaggccaaatcttgtgtttccagtcatagcaacaacatggtgccttctgttactccaagcaggctcctcctcccctcctcctcaaactgcacctgcacctgcacttccaccaagcaatccctgcatcgcccgcgagcgggacgctctgcttgacctcaaagcaggactccaagatcccagcaactacctggcatcctggcaaggcgacaactgctgcgacgaatgggaaggcgtcgtatgcagcaagcgaaacggccatgtcgcgacgcttacgctcgagtacgctggaatcggaggtaagataagcccatccctgcttgctctacggcatctcaagtccatgagccttgctggcaatgacttcggaggtgagccgatcccggagctcttcggtgaactcaagagcatgcggcatctcaccctcggtgatgccaacttcagtgggctggttcctcctcatctcggcaacctctccaggttgatcgatctggatctcacaagctacaagggtccaggactctactcgacgaatcttgcgtggttgtcacgcttggcaaacctacagcatctctacttgggcggcgtgaacctcagcacagcattcgactgggctcactctctcaacatgcttccatctctacagcacttgagccttcgcaactgtggcctacgcaacgctatccctcctccgctacacatgaaccttacatctctggaggtaattgacctaagtggtaaccccttccactcacctgttgcagtcgaaaaactcttttggccattttgggattttcctagacttgaaacaatttatctagaaagttgtgggcttcagggtatcctccccgagtatatgggaaattccacatcccttgtaaatttgggccttaacttcaacgatctcacagggctgccaaccacattcaagagactaagcaacttgaagtttctgtaccttgcacagaataatatcagtggtgacatagaaaaattgttagataaattgcctgataatggattgtacgtactagaattgtacgggaacaatttagagggaagcttgccagctcaaaagggacgattgggaagtctttataaccttcgtatcagtgataacaaaatctcaggagatataccactttggattggagaactcacaaacctcacaagtctagagcttgattccaacaacttccatggcgtgattacacaattccacttggctaatctagctagtttgaaaattctagggttatcccataacactctagcaatagtggctgaccataattgggttcctcctttcaaactgatgatagccggtttaaaatcttgtggactagggcctaaattcccaggatggctaaggtctcaagatacgattactatgatggatatttcaaatacaagcatagctgattctatacctgattggttctggaccacattctccaacactagatattttgttctatcaggaaatcagattagtggagtgctaccagcaatgatgaacgaaaaaatggtagccgaagtaatagatttcagtaacaacCttctggaaggtcaattacaaaaggttccagaaaatttaacataccttgacctctcaaaaaataAtctatcagggccactaccacttgattttggagctccatttctagagtcccttattctcttcgaaaattcattgtctggtaaaattccacaatctttttgtcaactgaagtatctagaatttgtagacctatctgcaaatctactacaagggccatttcccaattgtttgaatatctcacaagcaggcaacacgtcaagggccgacctgctaggtgttcaccaaaacatcattatgttgaacttaaatgacaataatctttctggaatgttccctttatttctccaaaagtgccaaaacctaatatttcttgatctcgcatttaatcgattttctgggagcttaccagcatggatagatgagttgtcagcgttagcactttttacgcttaccaagatgaaggagcttcagtatctggacctagcttataacagcttctcaggggcaataccatggtcactagtgaatttgacggcaatgtcccacaggcctgctgacaatgattcactttcatatattgtctattacggatggtcactctcgacgtcaaatgttagagtaattatgttggctaatcttggaccatacaattttgaagaatctggacctgacttcagccacattactagtgccactaatgagagtttgttggttgtcaccaaagggcaacagcttgaatttagaagcggaatcatttatatggtaaAtattgatctgtcctgcaacaatttaacaggccatattcctgaggatattagcatgctcactgcactgaaaaacttgaacctatcttggaatcatctaagcggggtaataccaacaaacattggagcactacaatcaatagaatctttggacctgtcacacaatgaactttttggccaaattcctacaagtttatcagcccctgcgtcactgagccacttgaatttgtcctataacaatttgtcaggacaaataccttatggtaatcagctacgaacacttgatgatcaggcatctatatatatcggcaatccgggactttgtggcccaccactctcaaggaattgttcggaatcgtcgaaattactgccagacgccgttgatgaagacaaaagtttgagcgatggggttttcctgtaccttggcatgggcataggatgggtagttggtctctgggttgtcttatgcaccttcttgttcatgcagagatggagaatcatttgtttcttggtttctgaccgcttgtacgaccggattcgggcttccttcacaaaacaatctggtagaaactga
More
|
|||||||
| Protein seq | MTRPNLVFPVIATTWCLLLLQAGSSSPPPQTAPAPALPPSNPCIARERDALLDLKAGLQDPSNYLASWQGDNCCDEWEGVVCSKRNGHVATLTLEYAGIGGKISPSLLALRHLKSMSLAGNDFGGEPIPELFGELKSMRHLTLGDANFSGLVPPHLGNLSRLIDLDLTSYKGPGLYSTNLAWLSRLANLQHLYLGGVNLSTAFDWAHSLNMLPSLQHLSLRNCGLRNAIPPPLHMNLTSLEVIDLSGNPFHSPVAVEKLFWPFWDFPRLETIYLESCGLQGILPEYMGNSTSLVNLGLNFNDLTGLPTTFKRLSNLKFLYLAQNNISGDIEKLLDKLPDNGLYVLELYGNNLEGSLPAQKGRLGSLYNLRISDNKISGDIPLWIGELTNLTSLELDSNNFHGVITQFHLANLASLKILGLSHNTLAIVADHNWVPPFKLMIAGLKSCGLGPKFPGWLRSQDTITMMDISNTSIADSIPDWFWTTFSNTRYFVLSGNQISGVLPAMMNEKMVAEVIDFSNNLLEGQLQKVPENLTYLDLSKNNLSGPLPLDFGAPFLESLILFENSLSGKIPQSFCQLKYLEFVDLSANLLQGPFPNCLNISQAGNTSRADLLGVHQNIIMLNLNDNNLSGMFPLFLQKCQNLIFLDLAFNRFSGSLPAWIDELSALALFTLTKMKELQYLDLAYNSFSGAIPWSLVNLTAMSHRPADNDSLSYIVYYGWSLSTSNVRVIMLANLGPYNFEESGPDFSHITSATNESLLVVTKGQQLEFRSGIIYMVNIDLSCNNLTGHIPEDISMLTALKNLNLSWNHLSGVIPTNIGALQSIESLDLSHNELFGQIPTSLSAPASLSHLNLSYNNLSGQIPYGNQLRTLDDQASIYIGNPGLCGPPLSRNCSESSKLLPDAVDEDKSLSDGVFLYLGMGIGWVVGLWVVLCTFLFMQRWRIICFLVSDRLYDRIRASFTKQSGRN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.081262 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0466500 | RBH | 0.086259 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g28300 | RBH | 0.056724 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0466500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0014090 | RBH | 0.196459 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0013960 | RBH | 0.0 | 0.0 | 0.096011 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0013950 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0013840 | RBH | 0.024582 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0013830 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0278200 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0014350 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0286000 | RBH | 0.177219 | 0 | 0.0118965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0013680 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0013770 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0013770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0013980 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G013750 | SBH | 0.170669 | 0.815988 | 0.504690 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0013630 | SBH | 0.143753 | 17.033474 | 2.268538 |
