Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_07g0005820 | OGI:07005880 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr07:4884097-4886675 | ||||||||
| Gene Symbol | STR2 | ||||||||||
| DNA seq | atggcgcaccggcacgtcggcgacctggaggcggcggcgtacggcggcggccggttcgggttcaccggcggcctggagttcaccgggctgacgtacacggtgaccaagaagcagcgcggcgccggcggcgagtgggagaagaaggaggtggacctgctgcacgaggtcaccgggtacgcccccaagggctgcgtcaccgccgtgatgggccccagcggcgccggcaagtcgacgctcctcgacgcgctcgccggccgcatcgccgcccgcctcggcggccgcgtcgcgctcgacggcgtggaggtgagccccggcctcgtcaagcgctgctccgcctacgtcatgcaggacgaccgcctcttccccatgctcaccgtccgcgagaccctcatgttcgccgccgacctccgcctcggcgcctccgtccccgccgccgacaagcgccgccgcgtcgacgccctcatcgaccagctcggcctcgcggcgtccgggaacacgtacatcggcgacgaggggacccggggcgtgtccggcggcgagcggcggcgtgtgtcgatcggcgtggacatcatccatggccccgcgctgctgttcctcgacgagccgacgtccggtctggactccacgagcgcgcacagcgtggtcgagaaggtgcgcgacatcgcctgcgccgggagcaccgtcgtgctcaccatccaccagccgtcgtcgcgcatcctgcagctgctcgaccacctcgtcattctcgcgcgtgggcagctcatgtacagcggcgcgccacgggaggtcgccgcccacctcggccgcatgggccgccgcgttcccaagggggagagctccatcgaacacctcctcgacgtcatccaggagtacgaccagtccgagttcggcgtcgccgccctcgccgagttctgcctcaccggcctcaagccgcccaagctcgccgccgacggcatctccaccgtctccagcatccctccgacgccactcctcgccggcgaggaggacttcgaccatagcctccggagccagcactccaggtcgccatggagcgccgctgccgccgccgccgcgacccagttcacgccgtcccgccgccccaagaaggaccacccggagatcgtgatgggcacgccgacgccactgagcatgagcgcgtacacgctgagcgagggcgactaccgcacgccgccaccaccacgccacgccgccgccgtcaccaccctcggcggccaccgcggcaagttcgcaaacacctacggcggcgaggtgtgggtgctgatgcggcgcaacttcaccaacatctggcgcacgccggagctgttcctgtcgcggctgatggtgctcgtcgccatgggcgtcctcatggcgaccatgttcaccaagccgagggacgacgaccagggggtgacggagaggctgagcttcttcgtcttcaccgtgtgcgtcctcttcttctcctccaacgacgccgtgccggcgttcatccaggagaggttcatcttcatcagggagacgtcgcacaacgcgtaccgcgcctcggcctacgtcgtcgccggcgtcgtcacatacctcccgttcctcctcctccagtccgccgcctacgccgccatcgtctggttcgccctccgcctccacggccagttcctctacttcctcgtcatggtctacgcctccctcctctccaccaactccttcgtcgtcttcatcagctccgtcgtccccaacttcatccttgggtaagcaacacaactctcacctcacctcactcaatcctaccgagtcacatgtacaaaccagttcaactcaaaaacttaaaccgatgagcaattttatagttcttaagaaagtaccatgaggtaccactttttctattgtaaatttggtatctcttgacatcgaggtactatgaggtattaaattttacactaaatttttggtacctcatggtacctcctcaagagccttaaaattgctctaaaccgataagtaagggcatagtacaattgacctaggccctactggagaggagcttctaaaagttgcggcttctcccagaatctctagctttcctaaatacttcagattctcatatggcttatgagaatttgtagttataaaattcagaaaaatgaactagaaaagagaaatgtttcctagctttcctagattgttagaagctagctaatttcttagaatcataagcttctctaaacagtgtacacttgtgcaggtatgcggcggtgatcgcattcacggcgctattcttcctcttctgcggctacttcctggacagccacagcatcccggtggggtggaagtggatgaacactatttccacgatgaagtacccttacgaggggctcctgatgaacgagttccagggagggagggtgttctcgtcgcacccgccgccggcgccgccgctcaccggcgatgtcatcctcgagcacctgaagatcagcacggcggaggatcgcaagtggtggatggtgctgtacctcatgggatgggccgtcttctaccgtgtcctcttctacctcgtcctccgcttcgcctccaagaacaagaggaagtga
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| CDS seq | atggcgcaccggcacgtcggcgacctggaggcggcggcgtacggcggcggccggttcgggttcaccggcggcctggagttcaccgggctgacgtacacggtgaccaagaagcagcgcggcgccggcggcgagtgggagaagaaggaggtggacctgctgcacgaggtcaccgggtacgcccccaagggctgcgtcaccgccgtgatgggccccagcggcgccggcaagtcgacgctcctcgacgcgctcgccggccgcatcgccgcccgcctcggcggccgcgtcgcgctcgacggcgtggaggtgagccccggcctcgtcaagcgctgctccgcctacgtcatgcaggacgaccgcctcttccccatgctcaccgtccgcgagaccctcatgttcgccgccgacctccgcctcggcgcctccgtccccgccgccgacaagcgccgccgcgtcgacgccctcatcgaccagctcggcctcgcggcgtccgggaacacgtacatcggcgacgaggggacccggggcgtgtccggcggcgagcggcggcgtgtgtcgatcggcgtggacatcatccatggccccgcgctgctgttcctcgacgagccgacgtccggtctggactccacgagcgcgcacagcgtggtcgagaaggtgcgcgacatcgcctgcgccgggagcaccgtcgtgctcaccatccaccagccgtcgtcgcgcatcctgcagctgctcgaccacctcgtcattctcgcgcgtgggcagctcatgtacagcggcgcgccacgggaggtcgccgcccacctcggccgcatgggccgccgcgttcccaagggggagagctccatcgaacacctcctcgacgtcatccaggagtacgaccagtccgagttcggcgtcgccgccctcgccgagttctgcctcaccggcctcaagccgcccaagctcgccgccgacggcatctccaccgtctccagcatccctccgacgccactcctcgccggcgaggaggacttcgaccatagcctccggagccagcactccaggtcgccatggagcgccgctgccgccgccgccgcgacccagttcacgccgtcccgccgccccaagaaggaccacccggagatcgtgatgggcacgccgacgccactgagcatgagcgcgtacacgctgagcgagggcgactaccgcacgccgccaccaccacgccacgccgccgccgtcaccaccctcggcggccaccgcggcaagttcgcaaacacctacggcggcgaggtgtgggtgctgatgcggcgcaacttcaccaacatctggcgcacgccggagctgttcctgtcgcggctgatggtgctcgtcgccatgggcgtcctcatggcgaccatgttcaccaagccgagggacgacgaccagggggtgacggagaggctgagcttcttcgtcttcaccgtgtgcgtcctcttcttctcctccaacgacgccgtgccggcgttcatccaggagaggttcatcttcatcagggagacgtcgcacaacgcgtaccgcgcctcggcctacgtcgtcgccggcgtcgtcacatacctcccgttcctcctcctccagtccgccgcctacgccgccatcgtctggttcgccctccgcctccacggccagttcctctacttcctcgtcatggtctacgcctccctcctctccaccaactccttcgtctggatgaacactatttccacgatgaagtacccttacgaggggctcctgatgaacgagttccagggagggagggtgttctcgtcgcacccgccgccggcgccgccgctcaccggcgatgtcatcctcgagcacctgaagatcagcacggcggaggatcgcaagtggtggatggtgctgtacctcatgggatgggccgtcttctaccgtgtcctcttctacctcgtcctccgcttcgcctccaagaacaagaggaagtga
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| Protein seq | MAHRHVGDLEAAAYGGGRFGFTGGLEFTGLTYTVTKKQRGAGGEWEKKEVDLLHEVTGYAPKGCVTAVMGPSGAGKSTLLDALAGRIAARLGGRVALDGVEVSPGLVKRCSAYVMQDDRLFPMLTVRETLMFAADLRLGASVPAADKRRRVDALIDQLGLAASGNTYIGDEGTRGVSGGERRRVSIGVDIIHGPALLFLDEPTSGLDSTSAHSVVEKVRDIACAGSTVVLTIHQPSSRILQLLDHLVILARGQLMYSGAPREVAAHLGRMGRRVPKGESSIEHLLDVIQEYDQSEFGVAALAEFCLTGLKPPKLAADGISTVSSIPPTPLLAGEEDFDHSLRSQHSRSPWSAAAAAAATQFTPSRRPKKDHPEIVMGTPTPLSMSAYTLSEGDYRTPPPPRHAAAVTTLGGHRGKFANTYGGEVWVLMRRNFTNIWRTPELFLSRLMVLVAMGVLMATMFTKPRDDDQGVTERLSFFVFTVCVLFFSSNDAVPAFIQERFIFIRETSHNAYRASAYVVAGVVTYLPFLLLQSAAYAAIVWFALRLHGQFLYFLVMVYASLLSTNSFVWMNTISTMKYPYEGLLMNEFQGGRVFSSHPPPAPPLTGDVILEHLKISTAEDRKWWMVLYLMGWAVFYRVLFYLVLRFASKNKRK |
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| Function | ABC transporter G family member STR2 [UniProtKB/Swiss-Prot:A0A0M4FLW6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_07g0005820 | OsLaMu_07g0005820.01 | Chr07 | 4884097 | 4886675 | + | NAM | ||
| CDS seq | atggcgcaccggcacgtcggcgacctggaggcggcggcgtacggcggcggccggttcgggttcaccggcggcctggagttcaccgggctgacgtacacggtgaccaagaagcagcgcggcgccggcggcgagtgggagaagaaggaggtggacctgctgcacgaggtcaccgggtacgcccccaagggctgcgtcaccgccgtgatgggccccagcggcgccggcaagtcgacgctcctcgacgcgctcgccggccgcatcgccgcccgcctcggcggccgcgtcgcgctcgacggcgtggaggtgagccccggcctcgtcaagcgctgctccgcctacgtcatgcaggacgaccgcctcttccccatgctcaccgtccgcgagaccctcatgttcgccgccgacctccgcctcggcgcctccgtccccgccgccgacaagcgccgccgcgtcgacgccctcatcgaccagctcggcctcgcggcgtccgggaacacgtacatcggcgacgaggggacccggggcgtgtccggcggcgagcggcggcgtgtgtcgatcggcgtggacatcatccatggccccgcgctgctgttcctcgacgagccgacgtccggtctggactccacgagcgcgcacagcgtggtcgagaaggtgcgcgacatcgcctgcgccgggagcaccgtcgtgctcaccatccaccagccgtcgtcgcgcatcctgcagctgctcgaccacctcgtcattctcgcgcgtgggcagctcatgtacagcggcgcgccacgggaggtcgccgcccacctcggccgcatgggccgccgcgttcccaagggggagagctccatcgaacacctcctcgacgtcatccaggagtacgaccagtccgagttcggcgtcgccgccctcgccgagttctgcctcaccggcctcaagccgcccaagctcgccgccgacggcatctccaccgtctccagcatccctccgacgccactcctcgccggcgaggaggacttcgaccatagcctccggagccagcactccaggtcgccatggagcgccgctgccgccgccgccgcgacccagttcacgccgtcccgccgccccaagaaggaccacccggagatcgtgatgggcacgccgacgccactgagcatgagcgcgtacacgctgagcgagggcgactaccgcacgccgccaccaccacgccacgccgccgccgtcaccaccctcggcggccaccgcggcaagttcgcaaacacctacggcggcgaggtgtgggtgctgatgcggcgcaacttcaccaacatctggcgcacgccggagctgttcctgtcgcggctgatggtgctcgtcgccatgggcgtcctcatggcgaccatgttcaccaagccgagggacgacgaccagggggtgacggagaggctgagcttcttcgtcttcaccgtgtgcgtcctcttcttctcctccaacgacgccgtgccggcgttcatccaggagaggttcatcttcatcagggagacgtcgcacaacgcgtaccgcgcctcggcctacgtcgtcgccggcgtcgtcacatacctcccgttcctcctcctccagtccgccgcctacgccgccatcgtctggttcgccctccgcctccacggccagttcctctacttcctcgtcatggtctacgcctccctcctctccaccaactccttcgtctggatgaacactatttccacgatgaagtacccttacgaggggctcctgatgaacgagttccagggagggagggtgttctcgtcgcacccgccgccggcgccgccgctcaccggcgatgtcatcctcgagcacctgaagatcagcacggcggaggatcgcaagtggtggatggtgctgtacctcatgggatgggccgtcttctaccgtgtcctcttctacctcgtcctccgcttcgcctccaagaacaagaggaagtga
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| Protein seq | MAHRHVGDLEAAAYGGGRFGFTGGLEFTGLTYTVTKKQRGAGGEWEKKEVDLLHEVTGYAPKGCVTAVMGPSGAGKSTLLDALAGRIAARLGGRVALDGVEVSPGLVKRCSAYVMQDDRLFPMLTVRETLMFAADLRLGASVPAADKRRRVDALIDQLGLAASGNTYIGDEGTRGVSGGERRRVSIGVDIIHGPALLFLDEPTSGLDSTSAHSVVEKVRDIACAGSTVVLTIHQPSSRILQLLDHLVILARGQLMYSGAPREVAAHLGRMGRRVPKGESSIEHLLDVIQEYDQSEFGVAALAEFCLTGLKPPKLAADGISTVSSIPPTPLLAGEEDFDHSLRSQHSRSPWSAAAAAAATQFTPSRRPKKDHPEIVMGTPTPLSMSAYTLSEGDYRTPPPPRHAAAVTTLGGHRGKFANTYGGEVWVLMRRNFTNIWRTPELFLSRLMVLVAMGVLMATMFTKPRDDDQGVTERLSFFVFTVCVLFFSSNDAVPAFIQERFIFIRETSHNAYRASAYVVAGVVTYLPFLLLQSAAYAAIVWFALRLHGQFLYFLVMVYASLLSTNSFVWMNTISTMKYPYEGLLMNEFQGGRVFSSHPPPAPPLTGDVILEHLKISTAEDRKWWMVLYLMGWAVFYRVLFYLVLRFASKNKRK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0191600 | RBH | 0.0 | 0.032431 | 1.850128 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g18874 | SBH | 0.171590 | 0.000000 | 0.451784 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0191600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0005920 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0005880 | RBH | 0.0 | 0.000000 | 0.285643 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0005790 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0005710 | RBH | 0.0 | 0.030110 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0005870 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0034600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0006380 | RBH | 0.0 | 0.000000 | 0.087906 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0085200 | SBH | 1.6944165 | 0.7820415 | 1.0715035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0005810 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0005810 | RBH | 0.0 | 1.078401 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0005850 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0005980 | RBH | 0.0 | 0.0 | 0.119901 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G006000 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0005800 | RBH | 0.0 | 0.0 | 0.000000 |
