Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_06g0029060 | OGI:06085040 | 15/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr06:32099367-32103406 | ||||||||
| Gene Symbol | OsFbox328, Os_F0254, Os_F0344 | ||||||||||
| DNA seq | ttacattgtaaaatactgggcgagcttctttttcttgacctgtacttgtttaccgaagcacgctgacgtccggcgtgcccactttctgatcttcttgtattcagcaatgtcggaaaaatcacagtgatcatcatcagccaatattgtgtggggttcaatggacataaactccagggcaacggcattctaaaggatgaaatagaccagctcctcctgaggacggtaacaccgaaacccgctcatgtagaccgtcttgaggtgatcatggcggctcaagcgatagtcctcccttgctaccttggtcttgcgaacccgacatttgtacttcttgtaataatacatctgcataattgtaaactctaagcacaaaaacatgaaagctctagctgtttaatctatgcatcacacgaaaaatactacctaacagtatctaacgcatcaaaagtcacacatttaccaaaagaatttccatttagttggattcttgtttttatccctctaacaaacaatgaaagcttgatctaattcccactggttctagtgcaatgaaggaaaagaacgacagaaaaacacaattcatttttgtttttcttcaaacattgattattataggtttaaaaaacatttagtatatcatagatagattgaatgcaattgaaaccgcgctaaaaattttaacaggtgtacataatctcaaatgaaaatgagtgaaggcaaaggaattatagcgcacttaatatgactgggtaaaatggatcaatactcacatgccattctagcacctccagtagaggagtgaattccaagtagtgcgccaattgaacaactcccttacaagtattcggagcactagttaagacatatacctcacacttcagatgcctcaaatgcataaacatgttgcgtggtcttgtcaatgtatgaacctgaaagacaaccaaacaaatggtaaggcagtctaccaagcaagcaaacaaatatacaaaaaggcaaaccaaaagatgaattccttggaacaaagggacaaacctgtcctaggtcatagtcgtacatatgtaaatccaagctaagctccttgacaggtaaagcacttggaagcacagtgaacacatggtcaagttgattaagttcaagaaatacgattgttgccttcactgattttgggcaaccatgaagcatgattgagattgcctcccctctatacccaaaacgcgtaagacaggaaacatgaaattcaatcatctgcacctccgtaccccaaatccgcagatgttgaagcttgtcaagttggcatggtattaccaaatcacccacgccagtgcacacactgatatccaagtcctcaagaagagaacatcgtgacagcaagtctggaagatcccccactaattttacatactgcagcgcgagccttttgagcatggtaaaaccagaaatatttggatgtacctctattgatacaacagctaggaacaaagactcaagagcagggtcatgcttagcatccaaagcatcaagtgagaagtggtaaacatcttctagcagatgtttccgtgttggccatctgtttctgtgccgagattgtaggttaacatctataacctttgccatcgatatgtttgaattcatccttgttgaggtcacagttgatgctgaacttatttaaccctattcccttgtggcgtcggacaacatgatttactgtcttagagaagtaccatcggttaattttgagagtaccctcatcagtaggctcctgcttggtgccatcaaagcacagattagggtggcatgtccagagcattctccagtttcttgacacaaggctcgctctagccgcatctctgagtggcataaaagatactataagctgctgaatatcctgtcattacaagagaaaacaaacgaaggcatgctcaatcaatttgtaggtgctttgattctataataatagaactcatccatgcaataaggcccaatgtttcatctatgtgaaaaatcacacaggcaggcaaggcatggcaggtgttgatagatgataggggaaaaaatgaactttttttttaccccggatagagagaagtcagggaagagttttttttgggaatacgcaagatgcgcatctttgtattaagagaaataaagagtatttacacgaacccaaacaagaaaataagagggggacgggaagataggagaaggacccaaagatcttaagcctattctcacgccagcatatggaaacgacctaaaccaagacctaaatgattagcaccggtagcgccgcatgtgccaaccgccagagagttgcttccgccgctatagcttgggctatctctgaccagggcctttgctgagagttgaaaaccctattgtttctctttccagattgtccatgcagttagagttgcaattgtgtcaaatccccttctgctagccgctcccactttaaggcgggagttgcaaagccagagatagaaggagtcttcattcagggggagacactgcggtagaccaatgctggaaaggacaacccaccaaagttggcgagactctgggcaagcgaccaagatgtgatcaatagtctcttcatgttgatcacaaaggacacatctatctgggtgaggcaaccccctagaacgcaggcggtccgccgtccagtagcgcctttttgtgaccaactaggcaaagaaccggcatctcggggggggggggggggggggcgaacgtcttctagatgggttcggattggaaaggaaccctacctagaaagagtgcccggtatgccgaacgcgaagagtagactcccgatgcttcccacttccaaataaaagagtcggggtggtcagagagccgcacagaggacctcaggatgctccagagctgaaggtactcaagaatagcctgcaaacccagcgcccctgtgcagtccctaatccatctcctgtcttgaagggcctcggcgaccgtcctgcgacggcgaagacgtgccaggacagccgcccaaacagccggagcgatgcagcgaatggaggaaccctctagccaaatgtcttcccaaaaaagaatggactccccattgcccagaacgcagactgttgaagccgtcgcaaagtttcgctcgttcaaggaaaccgggatgttgaggccgtgccatggcttatccggcgaagtgcgctacaaccagacccatctcgatcttaaggcgatgcccatgcgatccaaatccggtacccccaacccgccgtagcattttggagcacaaacaccaccccatgcgacccgacacttgccatcatgggtactgactttgccggcccaaagaaaacccctccttatcttgtcaattcctttaattacccacttgggtgcatcaagggcaatcagcaaatagattggaatcgagcttaagaccgaattgaccatggtgatgcgaccggttggagacataagatcatattgctagtgcgggagccggcgagcgatcttgtcgacaaacggctacaggtcctccttcttgaggcggaagatggaaagaggcaggccgaggtatgtgcaaggaaacgaagctagcggacatggaagcgccgattgaatcaaggagaggtcatcatccgagcacctgatcggaagcaccgaacatttgttgaagttcgtgtggagaccggaagcttcgccaaagatgcgcggcactgttgtggcggtctccaaatcggcaaccgtcggcctgacgaaagcgaccacgtcatcagcgtagagggagacccggtgagggatccccagcggctggaggagccccaactcttccgccttaacaaagagggagctcagagaatccatggcgaggatgaagatcataggggagataggatcccctgacggacaccacgcctgtgccaaatcgtctcccccggcgccccaatttagagttttacctcagggaggtcttgtatctggaaagatggcggcagcctgagtgagtcgctgacactgcggtggtgctccaacctcctcaccttggtggtcgtcggatactccat
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| CDS seq | atggagtatccgacgaccaccaaggtgaggaggttggagcaccaccgcagtgatattcagcagcttatagtatcttttatgccactcagagatgcggctagagcgagccttgtgtcaagaaactggagaatgctctggacatgccaccctaatctgtgctttgatggcaccaagcaggagcctactgatgagggtactctcaaaattaaccgatggtacttctctaagacagtaaatcatgttgtccgacgccacaagggaatagggttaaataagttcagcatcaactgtgacctcaacaaggatgaattcaaacatatcgatggcaaagatgttaacctacaatctcggcacagaaacagatggccaacacggaaacatctgctagaagatgtttaccacttctcacttgatgctttggatgctaagcatgaccctgctcttgagtctttgttcctagctgttgtatcaatagaggtacatccaaatatttctggttttaccatgctcaaaaggctcgcgctgcagtatgtaaaattagtgggggatcttccagacttgctgtcacgatgttctcttcttgaggacttggatatcagtgtgtgcactggcgtgggtgatttggtaataccatgccaacttgacaagcttcaacatctgcggatttggggtacggaggtgcagatgattgaatttcatgtttcctgtcttacgcgttttgggtatagaggggaggcaatctcaatcatgcttcatggttgcccaaaatcagtgaaggcaacaatcgtatttcttgaacttaatcaacttgaccatgtgttcactgtgcttccaagtgctttacctgtcaaggagcttagcttggatttacatatgtacgactatgacctaggacaggttcatacattgacaagaccacgcaacatgtttatgcatttgaggcatctgaagtgtgaggtatatgtcttaactagtgctccgaatacttgtaagggagttgttcaattggcgcactacttggaattcactcctctactggaggtgctagaatggcatatgtattattacaagaagtacaaatgtcgggttcgcaagaccaaggtagcaagggaggactatcgcttgagccgccatgatcacctcaagacggtctacatgagcgggtttcggtgttaccgtcctcaggaggagctgaatgccgttgccctggagtttatgtccattgaaccccacacaatattggctgatgatgatcactgtgatttttccgacattgctgaatacaagaagatcagaaagtgggcacgccggacgtcagcgtgcttcggtaaacaagtacaggtcaagaaaaagaagctcgcccagtattttacaatgtaa
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| Protein seq | MEYPTTTKVRRLEHHRSDIQQLIVSFMPLRDAARASLVSRNWRMLWTCHPNLCFDGTKQEPTDEGTLKINRWYFSKTVNHVVRRHKGIGLNKFSINCDLNKDEFKHIDGKDVNLQSRHRNRWPTRKHLLEDVYHFSLDALDAKHDPALESLFLAVVSIEVHPNISGFTMLKRLALQYVKLVGDLPDLLSRCSLLEDLDISVCTGVGDLVIPCQLDKLQHLRIWGTEVQMIEFHVSCLTRFGYRGEAISIMLHGCPKSVKATIVFLELNQLDHVFTVLPSALPVKELSLDLHMYDYDLGQVHTLTRPRNMFMHLRHLKCEVYVLTSAPNTCKGVVQLAHYLEFTPLLEVLEWHMYYYKKYKCRVRKTKVAREDYRLSRHDHLKTVYMSGFRCYRPQEELNAVALEFMSIEPHTILADDDHCDFSDIAEYKKIRKWARRTSACFGKQVQVKKKKLAQYFTM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_06g0029060 | OsLaMu_06g0029060.01 | Chr06 | 32099367 | 32103406 | - | NAM | ||
| CDS seq | atggagtatccgacgaccaccaaggtgaggaggttggagcaccaccgcagtgatattcagcagcttatagtatcttttatgccactcagagatgcggctagagcgagccttgtgtcaagaaactggagaatgctctggacatgccaccctaatctgtgctttgatggcaccaagcaggagcctactgatgagggtactctcaaaattaaccgatggtacttctctaagacagtaaatcatgttgtccgacgccacaagggaatagggttaaataagttcagcatcaactgtgacctcaacaaggatgaattcaaacatatcgatggcaaagatgttaacctacaatctcggcacagaaacagatggccaacacggaaacatctgctagaagatgtttaccacttctcacttgatgctttggatgctaagcatgaccctgctcttgagtctttgttcctagctgttgtatcaatagaggtacatccaaatatttctggttttaccatgctcaaaaggctcgcgctgcagtatgtaaaattagtgggggatcttccagacttgctgtcacgatgttctcttcttgaggacttggatatcagtgtgtgcactggcgtgggtgatttggtaataccatgccaacttgacaagcttcaacatctgcggatttggggtacggaggtgcagatgattgaatttcatgtttcctgtcttacgcgttttgggtatagaggggaggcaatctcaatcatgcttcatggttgcccaaaatcagtgaaggcaacaatcgtatttcttgaacttaatcaacttgaccatgtgttcactgtgcttccaagtgctttacctgtcaaggagcttagcttggatttacatatgtacgactatgacctaggacaggttcatacattgacaagaccacgcaacatgtttatgcatttgaggcatctgaagtgtgaggtatatgtcttaactagtgctccgaatacttgtaagggagttgttcaattggcgcactacttggaattcactcctctactggaggtgctagaatggcatatgtattattacaagaagtacaaatgtcgggttcgcaagaccaaggtagcaagggaggactatcgcttgagccgccatgatcacctcaagacggtctacatgagcgggtttcggtgttaccgtcctcaggaggagctgaatgccgttgccctggagtttatgtccattgaaccccacacaatattggctgatgatgatcactgtgatttttccgacattgctgaatacaagaagatcagaaagtgggcacgccggacgtcagcgtgcttcggtaaacaagtacaggtcaagaaaaagaagctcgcccagtattttacaatgtaa
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| Protein seq | MEYPTTTKVRRLEHHRSDIQQLIVSFMPLRDAARASLVSRNWRMLWTCHPNLCFDGTKQEPTDEGTLKINRWYFSKTVNHVVRRHKGIGLNKFSINCDLNKDEFKHIDGKDVNLQSRHRNRWPTRKHLLEDVYHFSLDALDAKHDPALESLFLAVVSIEVHPNISGFTMLKRLALQYVKLVGDLPDLLSRCSLLEDLDISVCTGVGDLVIPCQLDKLQHLRIWGTEVQMIEFHVSCLTRFGYRGEAISIMLHGCPKSVKATIVFLELNQLDHVFTVLPSALPVKELSLDLHMYDYDLGQVHTLTRPRNMFMHLRHLKCEVYVLTSAPNTCKGVVQLAHYLEFTPLLEVLEWHMYYYKKYKCRVRKTKVAREDYRLSRHDHLKTVYMSGFRCYRPQEELNAVALEFMSIEPHTILADDDHCDFSDIAEYKKIRKWARRTSACFGKQVQVKKKKLAQYFTM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0716467 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g50250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0716467 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0029210 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0029030 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0029170 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0028730 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0029210 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0477700 | RBH | 0 | 0.0082805 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0028580 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0029110 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0029200 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0028770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0029410 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G028930 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0029050 | RBH | 0.0 | 0.0 | 0.0 |
