Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_06g0020790 | OGI:06065450 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr06:24906112-24910788 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gctcgcgcgtcgtccatggccatggccaccacttgcctctcgcctttcttcctcctcccaccaatggccaactaagcgcacgctctcccttgattcgccattgctgaacggagctgcaagctttcgattgctgagttaatcgccgacgtcgcggcggaaatggcttcccgttcgtcgcgcggcgagcgcgtcggtgtggtgttcgtcctcgtcgtcgtcgtcctctgcgtcgacgtctccacgctggtggccgcgcagccgctggtgtcgtcgcaggcgaagacgctgctctgggtgcgccgcctgctgggtttccccccggcgctcgacgcgctggcgggggcgcccgacgcgtgcgcgctgccgcccacgccgtcgctcaccgtggcgtgcgcgggcgggcaggtcaccgagctctccgtgctcggcggccgcgcccccgacgccgcgctgccggccaacttctccgccgacgcgctcttcaccacgctcacgcggctcccggcgctgtcgcgcctcacgctcgcgtcgctcggcgtctggggcgagctcccgggcgccaagctccaccgcctccaggcgctgcgggtgctcaacctcaccggcaactgcctctacggcgccgtccccgagcatctctcgcggatgtactcgctgcagagcctcgtgctgtcgcggaacaggctcaatggcaccgtgcccaagctctccgggctcgcgttcctcgacgagctcgacctcggccacaacaggctcggcccggcgttcccggaggtggggaacgcggtggtgcggctggtcctcgccgacaacaacttcaccggcaagattccggcggaggtgagctcgctgggccagctccagttcttggacgtgtccggcaaccggctgcaggggtggatcccttcctccatcttcgcgctcccggcgctgcggcacatcgacctgtcgcgcaaccagctcgccgggcagctgccggcgagcacggcgtgcgccgacgcgctggcgttcgtcgacgtctcggacaacctgctcgccggggcgcgcccggcgtgcatgcgcggcaactcgtcggcgcgcacggtgctcgacgcgggcaactgcttccgcgacgccaggtcgcagcggccgagcacgtactgcaaccccggcgcgctggccgccgtgctgccgccggcgcaggggaccggcggcgagcaggggtcgggcgggaagggcggccaggtggggatggcccttggcatcgtcggcggcgtcgtggccggcgcggcgctgattgcgctggtcatgatggccgtgctgaggagggcgaggaggcagaatccggaggtgagcgtcttgcccaagtcgctgccgccggcgaagaagaaggcagcggcggacggcggcaaggcgccggccaaggtgacacagaggattgttactcctgctgaaaagagtaagagtcttactccagttgtttattttgttttgcttaatttgtttattttttgtttttctgcacttcaattggtacaatgcacttagtcttagttgaattaattatgaaaaggggacacaatattatgcatgggcttcattgaaagggagtatatatgatttgtgatagagaaaggggcaacacaaagaagtgaagtggtagtacttagaagcaattacgattagttttatattgcattgtttctggtgtgaataaagtctactcactttagtgaaatgtgagatataattaggaagctttgcgtgatctagctagtgtggatcttgcttagactatgagttttgaagcatgggctggatctttattccttgcttcaaagaagactttgagaaagtaaaagcagcaaagtcaatcatcaaaccagaaaaagggccaaaaaaaacaagaaggatcaatggcttagtgaccactaaacaatttgcaggatggtcatttttattcttttttggttgggtaacatgatgtccattgtcatagggcatgcatcacaagctgcaagggtgaatacactagaagtaccagcctaccgtgtctatacacttgaggagctccaagaagcaaccaacaactttggttcatccaacttgatcaagagttctcctgttgttaaggtatgtagaagtgaaatcattttgagcttcaagcgaaaaatcaaagtaataaattcacatacaaatgatactccactcacattagccatttgaagaataatgtgcattgcaattttcaaaagtagattgctatgtgccatgcacatttttcttactttattttcgtgtggagtatattttgaacatgtatacctgctagcaaactcaaatgtaaattttagaaatccatctccatctttccaaataatccattgcagacctctgcatctcaagtcataatggactagagtacactttggactacaatatcttttgtattttttctgtcgcacttaataaatttgatgaataaaagtctctgggtgaatataaaagaatactctcgtaaaaaaaatatataaaaaaatacatttttattggaattaacctgcaactaagaaccttgacgcccctgattacttttaacttcctaattaagataagtatttgaaagtatgtaatttgaggcattgtaattaggatcaataatattattttcttcaccagtatttacaaaaaaaaaaaattatataagtgcacttgcgtcaagtatcattttgcttatagtatatgttgaagtgtattgtcttattgtacgttatacatgtgctatttttgcaaaagaaaggaagaggaaaaaacacatggaccagctcacattaccttcaagcttccttttcaactggtttacgcaactttagctatttatgcctgttctgtttatttgttcttaagtgctttgccactccaatttttgtcatttattgaccttggccatatttgtacaagttttctgctagaaaattttgtttttcatgtgtggcttatcgtccttttttgctgatagcattacaacggtcagcttcaagatggttctagagtgtcactgagatgcctgaagctgaaacccaagtattcccctcagagcctgacccaatacatggaaattatttctaaacttcgacaccgccatttggttagcatcatcggtcactgcattgttgaagatcaagagaatcctaatattgctagttcattatgcctcctttctgaatgcgtaacaaatggatccctaagaagtcatctaaccggtaattatattttacaacatcatgcatatataccacactataactagatatcttcaagtatgtgaatttatccttttactggctgtgcagagtggaggaagcgtgagatgctaaaatggccccaacgtgtttctgctgccattggtgtcgccagagggatccaatttttgcatgatgtgactgctccgggcattgtacacaatgatctaagcatcgaaaatattcttctggacaagacactcacttccaaaatcagcaactttaatctcccgttgatatcaactagcaagaatggcaaggtaaattcgaattttaaattattggggaagctcctaacttgctaacctgatagctaagttgtaaccatgtttatctttcagatattctcagaatccccctttgccacatctgaagacaatgatctcggcaggtacggtgtccttttagatggaaaatgacactcccacttgctaaactataacagttgacagtttttctgaacctaaatgattggttgttgaaactcagagatgccacctgacctacctttcagaatgaatgacaatcttattaatcttctcaacttgtgaactaaatgattatgattgtttcttctcatagcgtgccaagcacagaacaaggggacaaggatgacatttaccagttcggcctaattcttctggaagtaatcacaggcaagccaacagagtccccaaaagacctggactccctgaaaactcaggtaaattgagaatggtttcacatcagagtgaaaaacacctcacaccagcaaatacctaacctttttactccttctcaaaactagataagtgaagctatagctgaagacccagatttattgaaagacatggcggacccgacgatccgcggaacgtttgccgtcgagtcgctgagcacggtggccgagatagcactcaactgcgctgccagtgacacaagcagccggccctccattgaggacgtcctctggaacctgcagtactccatgcaggtgcaggacggatgggcaagcagcgagagcctgagcatgagcaccagatcacaggggtgagtaagcaaaaaaagaggcaatttcacttctccgagtcaagcaaaaagatgcaatttcactttcagattggttgcgattttgctgtaaaagggtgggtgtgttgttctgtttcgttccttttcctgcgattttgctgtgggagaggtgtgtgtgttcgtccttttcctcgtgtatagaagttctcTtttttttttcccttgttgctcaaagttgtaacattccatccagctagagcaattaagaccaaaattattggaccaatattacttatggtgatctggggacagcatttacatctccaccaaacgaaagaggacacatgaattccacaggaacccacataagttacaggattttgcatac
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| CDS seq | atggcttcccgttcgtcgcgcggcgagcgcgtcggtgtggtgttcgtcctcgtcgtcgtcgtcctctgcgtcgacgtctccacgctggtggccgcgcagccgctggtgtcgtcgcaggcgaagacgctgctctgggtgcgccgcctgctgggtttccccccggcgctcgacgcgctggcgggggcgcccgacgcgtgcgcgctgccgcccacgccgtcgctcaccgtggcgtgcgcgggcgggcaggtcaccgagctctccgtgctcggcggccgcgcccccgacgccgcgctgccggccaacttctccgccgacgcgctcttcaccacgctcacgcggctcccggcgctgtcgcgcctcacgctcgcgtcgctcggcgtctggggcgagctcccgggcgccaagctccaccgcctccaggcgctgcgggtgctcaacctcaccggcaactgcctctacggcgccgtccccgagcatctctcgcggatgtactcgctgcagagcctcgtgctgtcgcggaacaggctcaatggcaccgtgcccaagctctccgggctcgcgttcctcgacgagctcgacctcggccacaacaggctcggcccggcgttcccggaggtggggaacgcggtggtgcggctggtcctcgccgacaacaacttcaccggcaagattccggcggaggtgagctcgctgggccagctccagttcttggacgtgtccggcaaccggctgcaggggtggatcccttcctccatcttcgcgctcccggcgctgcggcacatcgacctgtcgcgcaaccagctcgccgggcagctgccggcgagcacggcgtgcgccgacgcgctggcgttcgtcgacgtctcggacaacctgctcgccggggcgcgcccggcgtgcatgcgcggcaactcgtcggcgcgcacggtgctcgacgcgggcaactgcttccgcgacgccaggtcgcagcggccgagcacgtactgcaaccccggcgcgctggccgccgtgctgccgccggcgcaggggaccggcggcgagcaggggtcgggcgggaagggcggccaggtggggatggcccttggcatcgtcggcggcgtcgtggccggcgcggcgctgattgcgctggtcatgatggccgtgctgaggagggcgaggaggcagaatccggaggtgagcgtcttgcccaagtcgctgccgccggcgaagaagaaggcagcggcggacggcggcaaggcgccggccaaggtgacacagaggattgttactcctgctgaaaagaggcatgcatcacaagctgcaagggtgaatacactagaagtaccagcctaccgtgtctatacacttgaggagctccaagaagcaaccaacaactttggttcatccaacttgatcaagagttctcctgttgttaagcattacaacggtcagcttcaagatggttctagagtgtcactgagatgcctgaagctgaaacccaagtattcccctcagagcctgacccaatacatggaaattatttctaaacttcgacaccgccatttggttagcatcatcggtcactgcattgttgaagatcaagagaatcctaatattgctagttcattatgcctcctttctgaatgcgtaacaaatggatccctaagaagtcatctaaccgagtggaggaagcgtgagatgctaaaatggccccaacgtgtttctgctgccattggtgtcgccagagggatccaatttttgcatgatgtgactgctccgggcattgtacacaatgatctaagcatcgaaaatattcttctggacaagacactcacttccaaaatcagcaactttaatctcccgttgatatcaactagcaagaatggcaagatattctcagaatccccctttgccacatctgaagacaatgatctcggcagcgtgccaagcacagaacaaggggacaaggatgacatttaccagttcggcctaattcttctggaagtaatcacaggcaagccaacagagtccccaaaagacctggactccctgaaaactcagataagtgaagctatagctgaagacccagatttattgaaagacatggcggacccgacgatccgcggaacgtttgccgtcgagtcgctgagcacggtggccgagatagcactcaactgcgctgccagtgacacaagcagccggccctccattgaggacgtcctctggaacctgcagtactccatgcaggtgcaggacggatgggcaagcagcgagagcctgagcatgagcaccagatcacaggggtga
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| Protein seq | MASRSSRGERVGVVFVLVVVVLCVDVSTLVAAQPLVSSQAKTLLWVRRLLGFPPALDALAGAPDACALPPTPSLTVACAGGQVTELSVLGGRAPDAALPANFSADALFTTLTRLPALSRLTLASLGVWGELPGAKLHRLQALRVLNLTGNCLYGAVPEHLSRMYSLQSLVLSRNRLNGTVPKLSGLAFLDELDLGHNRLGPAFPEVGNAVVRLVLADNNFTGKIPAEVSSLGQLQFLDVSGNRLQGWIPSSIFALPALRHIDLSRNQLAGQLPASTACADALAFVDVSDNLLAGARPACMRGNSSARTVLDAGNCFRDARSQRPSTYCNPGALAAVLPPAQGTGGEQGSGGKGGQVGMALGIVGGVVAGAALIALVMMAVLRRARRQNPEVSVLPKSLPPAKKKAAADGGKAPAKVTQRIVTPAEKRHASQAARVNTLEVPAYRVYTLEELQEATNNFGSSNLIKSSPVVKHYNGQLQDGSRVSLRCLKLKPKYSPQSLTQYMEIISKLRHRHLVSIIGHCIVEDQENPNIASSLCLLSECVTNGSLRSHLTEWRKREMLKWPQRVSAAIGVARGIQFLHDVTAPGIVHNDLSIENILLDKTLTSKISNFNLPLISTSKNGKIFSESPFATSEDNDLGSVPSTEQGDKDDIYQFGLILLEVITGKPTESPKDLDSLKTQISEAIAEDPDLLKDMADPTIRGTFAVESLSTVAEIALNCAASDTSSRPSIEDVLWNLQYSMQVQDGWASSESLSMSTRSQG |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g14390 [UniProtKB/Swiss-Prot:Q9M9S4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_06g0020790 | OsLaMu_06g0020790.01 | Chr06 | 24906112 | 24910788 | + | NAM | ||
| CDS seq | atggcttcccgttcgtcgcgcggcgagcgcgtcggtgtggtgttcgtcctcgtcgtcgtcgtcctctgcgtcgacgtctccacgctggtggccgcgcagccgctggtgtcgtcgcaggcgaagacgctgctctgggtgcgccgcctgctgggtttccccccggcgctcgacgcgctggcgggggcgcccgacgcgtgcgcgctgccgcccacgccgtcgctcaccgtggcgtgcgcgggcgggcaggtcaccgagctctccgtgctcggcggccgcgcccccgacgccgcgctgccggccaacttctccgccgacgcgctcttcaccacgctcacgcggctcccggcgctgtcgcgcctcacgctcgcgtcgctcggcgtctggggcgagctcccgggcgccaagctccaccgcctccaggcgctgcgggtgctcaacctcaccggcaactgcctctacggcgccgtccccgagcatctctcgcggatgtactcgctgcagagcctcgtgctgtcgcggaacaggctcaatggcaccgtgcccaagctctccgggctcgcgttcctcgacgagctcgacctcggccacaacaggctcggcccggcgttcccggaggtggggaacgcggtggtgcggctggtcctcgccgacaacaacttcaccggcaagattccggcggaggtgagctcgctgggccagctccagttcttggacgtgtccggcaaccggctgcaggggtggatcccttcctccatcttcgcgctcccggcgctgcggcacatcgacctgtcgcgcaaccagctcgccgggcagctgccggcgagcacggcgtgcgccgacgcgctggcgttcgtcgacgtctcggacaacctgctcgccggggcgcgcccggcgtgcatgcgcggcaactcgtcggcgcgcacggtgctcgacgcgggcaactgcttccgcgacgccaggtcgcagcggccgagcacgtactgcaaccccggcgcgctggccgccgtgctgccgccggcgcaggggaccggcggcgagcaggggtcgggcgggaagggcggccaggtggggatggcccttggcatcgtcggcggcgtcgtggccggcgcggcgctgattgcgctggtcatgatggccgtgctgaggagggcgaggaggcagaatccggaggtgagcgtcttgcccaagtcgctgccgccggcgaagaagaaggcagcggcggacggcggcaaggcgccggccaaggtgacacagaggattgttactcctgctgaaaagaggcatgcatcacaagctgcaagggtgaatacactagaagtaccagcctaccgtgtctatacacttgaggagctccaagaagcaaccaacaactttggttcatccaacttgatcaagagttctcctgttgttaagcattacaacggtcagcttcaagatggttctagagtgtcactgagatgcctgaagctgaaacccaagtattcccctcagagcctgacccaatacatggaaattatttctaaacttcgacaccgccatttggttagcatcatcggtcactgcattgttgaagatcaagagaatcctaatattgctagttcattatgcctcctttctgaatgcgtaacaaatggatccctaagaagtcatctaaccgagtggaggaagcgtgagatgctaaaatggccccaacgtgtttctgctgccattggtgtcgccagagggatccaatttttgcatgatgtgactgctccgggcattgtacacaatgatctaagcatcgaaaatattcttctggacaagacactcacttccaaaatcagcaactttaatctcccgttgatatcaactagcaagaatggcaagatattctcagaatccccctttgccacatctgaagacaatgatctcggcagcgtgccaagcacagaacaaggggacaaggatgacatttaccagttcggcctaattcttctggaagtaatcacaggcaagccaacagagtccccaaaagacctggactccctgaaaactcagataagtgaagctatagctgaagacccagatttattgaaagacatggcggacccgacgatccgcggaacgtttgccgtcgagtcgctgagcacggtggccgagatagcactcaactgcgctgccagtgacacaagcagccggccctccattgaggacgtcctctggaacctgcagtactccatgcaggtgcaggacggatgggcaagcagcgagagcctgagcatgagcaccagatcacaggggtga
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| Protein seq | MASRSSRGERVGVVFVLVVVVLCVDVSTLVAAQPLVSSQAKTLLWVRRLLGFPPALDALAGAPDACALPPTPSLTVACAGGQVTELSVLGGRAPDAALPANFSADALFTTLTRLPALSRLTLASLGVWGELPGAKLHRLQALRVLNLTGNCLYGAVPEHLSRMYSLQSLVLSRNRLNGTVPKLSGLAFLDELDLGHNRLGPAFPEVGNAVVRLVLADNNFTGKIPAEVSSLGQLQFLDVSGNRLQGWIPSSIFALPALRHIDLSRNQLAGQLPASTACADALAFVDVSDNLLAGARPACMRGNSSARTVLDAGNCFRDARSQRPSTYCNPGALAAVLPPAQGTGGEQGSGGKGGQVGMALGIVGGVVAGAALIALVMMAVLRRARRQNPEVSVLPKSLPPAKKKAAADGGKAPAKVTQRIVTPAEKRHASQAARVNTLEVPAYRVYTLEELQEATNNFGSSNLIKSSPVVKHYNGQLQDGSRVSLRCLKLKPKYSPQSLTQYMEIISKLRHRHLVSIIGHCIVEDQENPNIASSLCLLSECVTNGSLRSHLTEWRKREMLKWPQRVSAAIGVARGIQFLHDVTAPGIVHNDLSIENILLDKTLTSKISNFNLPLISTSKNGKIFSESPFATSEDNDLGSVPSTEQGDKDDIYQFGLILLEVITGKPTESPKDLDSLKTQISEAIAEDPDLLKDMADPTIRGTFAVESLSTVAEIALNCAASDTSSRPSIEDVLWNLQYSMQVQDGWASSESLSMSTRSQG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_06g0020790 | OsLaMu_06g0020790.02 | Chr06 | 24910178 | 24910690 | + | IsoSeq | ||
| CDS seq | atgggcaagcagcgagagcctgagcatgagcaccagatcacaggggtgagtaagcaaaaaaagaggcaatttcacttctccgagtcaagcaaaaagatgcaatttcactttcagattggttgcgattttgctgtaaaagggtgggtgtgttgttctgtttcgttccttttcctgcgattttgctgtgggagaggtgtgtgtgttcgtccttttcctcgt
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| Protein seq | MGKQREPEHEHQITGVSKQKKRQFHFSESSKKMQFHFQIGCDFAVKGWVCCSVSFLFLRFCCGRGVCVRPFPR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.113658 | 22.132538 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0589600 | RBH | 3.252046 | 1.792558 | 4.773214 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38970 | RBH | 1.550772 | 0.820424 | 0.945305 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0589600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020970 | RBH | 0.000000 | 15.794037 | 6.715761 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020820 | RBH | 0.180162 | 11.078926 | 1.023286 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020920 | RBH | 0.746978 | 51.228462 | 11.672712 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020640 | RBH | 0.137958 | 1.578008 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0021080 | RBH | 0.748671 | 35.240719 | 16.552511 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0367600 | RBH | 8.199085 | 11.8055585 | 4.1167045 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020520 | RBH | 0.033553 | 2.439978 | 0.877370 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0344400 | RBH | 8.908303 | 3.9747325 | 9.0910115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020920 | RBH | 0.000000 | 0.202913 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020940 | RBH | 0.277532 | 13.334162 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020560 | RBH | 0.0 | 35.032070 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0021280 | RBH | 0.000000 | 0.000000 | 0.463526 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020640 | RBH | 0.110579 | 13.007029 | 3.982720 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020900 | RBH | 0.168928 | 29.246138 | 5.091515 |
