Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_06g0017780 | OGI:06010500 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr06:21018543-21021427 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaaaccgcaaccgcctcaacgaacgcctcctccttcctccgccgctctcccctcgccggagcgccgagagaccaagagcgcccccggcgctgcctccgccgctcgccggagcggagcccggaagcaatggagcggttccaggaccggcaccacgtgtggctgcggagccgcgagcacggcctgtacctccacgccgacctcgccgacgggagcagcgtctacctgcacccgtaccgcgcgaccgcgcgcgcggcgtgggcggtgcacgtgctccaccacttcgacggccgcatgctcatgctccacagcgccgccaacgggcggtacctggcggccacgacctcgccgtgggcggcgaccgcggcgcggttcggcctcggcggtggcaaccgcgtcaccctgcgcgacctcgaccggctgccgatgttcgccgccggctggtttcccatcgtgtcggcatccggggacgtcctgctgggtcacgctagcgaccgattcctccgagctatcgacagaggggatggcaatggcgtcaccgtcgaggtgtccgacagccgcagaccgaacacgccctgggtggtggaggccatccccccgatagaatccatacctcgccttccacatcttgtggtgagcgcgtcatgccctgtttttttcgatcctttcttaactgattgcatgagttgggttctttggggatcaattgctgatgctttcttgaaccagagcttgcagattgtggcaagttgagttagttttgctcttctgggcgctattatttggttctgatgttgcgttgtttctgcctctgttgctaatcgtgcgtcctgagttgttcatgggaaagtaattcttagtagcattagtagcatttgggggtcatggtgtcaattctatttctgtatgatacattcgtagtggggagcagttcttggttccatcaggttgccatcttggttcttcagttcttgcttgtccgcatttgcttccttccagggtgcagttcttgggtcacaaattccattttcggttccgtttacttaaattttctgtccgctctatgaattttccttttccaagattatttcagtacggttcttgaaaatggcaacactacctgatcaccattgccgttctttcttaatgtgttcttggtcctcggtcacacagtgtgtgatgaattcttgcaaattgtaatgaattcctttgtgccatcttctttgctgcagggcataggacacattgcacgggcaatccggttcgtgcgagcagagcgggcatctactgatgggacctttccccatgtcgcctgggcttgtttcgagttcaccgggaggtcattgttcaatctgaggacggagctggcgcgtaggttgaactttgcagtggtctccgatgtcattatgtgtgttcgagcgggcttgtttggacggctgactcctctgatcaccgatctgcctcccaacaatgtgaccatggagatcatcgttgtcacggctgggacgattggtgagatttcgtttttatgtacctgtgtattactggttatcgccttctcttttcatgacagttctatagattacatgctcggtattccatagtcttggttagtcatactgttgctgcattttccctgacaacttttgtattgacatcatctagttaaggagaaactactgactactgttactgcttttaataaagttctatcacttgtcatcaaggaaactgtgcacatgtatagtaaggagaaacttatctgaatgttcttgtagataaggaaagaaagaagttgagtgaaaataagtagttattaagagtttgtcttgtggattttcagtctgtgtacagatgctaaatatggactgaaactagtcatgtgatcaggaacagccattttttagttgcatgcatagtacatactcatgctcaatcttgatatggataagactggttttatgcatcctcagtttgaataactcggttgctttttttttctttattttgccctggtattagtgttgaggggtttaatcccagatcatctcagtcagctcttgtcattatgagaaatggggccttcgatttaagacattcttacatgccttgtgcctactctaactgtaaaagagttcacttgtacattagtaccatatcaagatacaatacaaacactgtttccattaagagcaattttacggtccttaatgaggtaccatgaagtaccattttttctattgtaaatttggtacctcatggtacctaggtactatgaggtactaaaatttacactaaaattttagtacctcatggtacctcctcaaggaccgtagaattactcttccattaaatcatgcttccggtttctgctcactatgctggtttctatgagtttttcattttcttctttaacaaaagggtgacccagatgtttacatcatgtctgaattgagcggcttgcgagttacaatatctgtacctaactgccttattattttgtctggtccttttgcaaattcagatgccaatgagttgagattccccaatgttggtgcagtctagaggaagacagaagtgcaggagcagaacatctgacagtcactcccccattcatcgtttcagaatttttttgctggctcagaccgaatgacaggagaaatcaatggaataggcttcagaaaggaaaccaccatctattctgtttcccggttgttagctatgggatgctctgatgtcttgaatgcctgaacatcgcgttctgacatttgctgtactttccattgtcatctgtatgatatgactgatgatccatacatttgcagatgtgaaatgttgtgctcaagtctgaatacacagagctcatctgtatgatatatagtactaca
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| CDS seq | atggagcggttccaggaccggcaccacgtgtggctgcggagccgcgagcacggcctgtacctccacgccgacctcgccgacgggagcagcgtctacctgcacccgtaccgcgcgaccgcgcgcgcggcgtgggcggtgcacgtgctccaccacttcgacggccgcatgctcatgctccacagcgccgccaacgggcggtacctggcggccacgacctcgccgtgggcggcgaccgcggcgcggttcggcctcggcggtggcaaccgcgtcaccctgcgcgacctcgaccggctgccgatgttcgccgccggctggtttcccatcgtgtcggcatccggggacgtcctgctgggtcacgctagcgaccgattcctccgagctatcgacagaggggatggcaatggcgtcaccgtcgaggtgtccgacagccgcagaccgaacacgccctgggtggtggaggccatccccccgatagaatccatacctcgccttccacatcttgtgggcataggacacattgcacgggcaatccggttcgtgcgagcagagcgggcatctactgatgggacctttccccatgtcgcctgggcttgtttcgagttcaccgggaggtcattgttcaatctgaggacggagctggcgcgtaggttgaactttgcagtggtctccgatgtcattatgtgtgttcgagcgggcttgtttggacggctgactcctctgatcaccgatctgcctcccaacaatgtgaccatggagatcatcgttgtcacggctgggacgattgatgccaatgagttgagattccccaatgttggtgcagtctag
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| Protein seq | MERFQDRHHVWLRSREHGLYLHADLADGSSVYLHPYRATARAAWAVHVLHHFDGRMLMLHSAANGRYLAATTSPWAATAARFGLGGGNRVTLRDLDRLPMFAAGWFPIVSASGDVLLGHASDRFLRAIDRGDGNGVTVEVSDSRRPNTPWVVEAIPPIESIPRLPHLVGIGHIARAIRFVRAERASTDGTFPHVAWACFEFTGRSLFNLRTELARRLNFAVVSDVIMCVRAGLFGRLTPLITDLPPNNVTMEIIVVTAGTIDANELRFPNVGAV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_06g0017780 | OsLaMu_06g0017780.01 | Chr06 | 21018543 | 21021427 | + | NAM | ||
| CDS seq | atggagcggttccaggaccggcaccacgtgtggctgcggagccgcgagcacggcctgtacctccacgccgacctcgccgacgggagcagcgtctacctgcacccgtaccgcgcgaccgcgcgcgcggcgtgggcggtgcacgtgctccaccacttcgacggccgcatgctcatgctccacagcgccgccaacgggcggtacctggcggccacgacctcgccgtgggcggcgaccgcggcgcggttcggcctcggcggtggcaaccgcgtcaccctgcgcgacctcgaccggctgccgatgttcgccgccggctggtttcccatcgtgtcggcatccggggacgtcctgctgggtcacgctagcgaccgattcctccgagctatcgacagaggggatggcaatggcgtcaccgtcgaggtgtccgacagccgcagaccgaacacgccctgggtggtggaggccatccccccgatagaatccatacctcgccttccacatcttgtgggcataggacacattgcacgggcaatccggttcgtgcgagcagagcgggcatctactgatgggacctttccccatgtcgcctgggcttgtttcgagttcaccgggaggtcattgttcaatctgaggacggagctggcgcgtaggttgaactttgcagtggtctccgatgtcattatgtgtgttcgagcgggcttgtttggacggctgactcctctgatcaccgatctgcctcccaacaatgtgaccatggagatcatcgttgtcacggctgggacgattgatgccaatgagttgagattccccaatgttggtgcagtctag
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| Protein seq | MERFQDRHHVWLRSREHGLYLHADLADGSSVYLHPYRATARAAWAVHVLHHFDGRMLMLHSAANGRYLAATTSPWAATAARFGLGGGNRVTLRDLDRLPMFAAGWFPIVSASGDVLLGHASDRFLRAIDRGDGNGVTVEVSDSRRPNTPWVVEAIPPIESIPRLPHLVGIGHIARAIRFVRAERASTDGTFPHVAWACFEFTGRSLFNLRTELARRLNFAVVSDVIMCVRAGLFGRLTPLITDLPPNNVTMEIIVVTAGTIDANELRFPNVGAV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0161800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g06660 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0161800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004550 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004460 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004400 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004520 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0018110 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0305300 | SBH | 0.029239 | 0.1459425 | 0.025291 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0017590 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0279500 | RBH | 0.038313 | 0.3106475 | 0.5385135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0018000 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0017880 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0017640 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004430 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004310 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004220 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0017910 | SBH | 0.0 | 0.0 | 0.0 |
