Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_06g0013670 | OGI:06036760 | 12/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr06:13381644-13383673 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cacgacaagtacaacacctcaataaataacagcatataaaacaaagagtagcatacagaaaacacaacatctccgagtggcatacatcAggggtgctctacacatgagcagagtgatcaccatcctcaATataaagattaaaccacagcgaaGcacacgactgaatgatatcatcacaacgtggaggcgtgtgtgagcagcacgatctatatcgcgtgatacacccacaagccaacAacgcagtctcaacagcacactttgctatcgttctatatgctaacatagattggaaattatagtcgcgcacaagaaaaccatatcgccgctgcaggtacctgacagcctccatggctgcaggctcgtgcacgctctggagagggtcacaggctacagaccagAaaaaaacggtgtctaactaagctggggctgcatatgctgggAagacaagctcaattccagccAacaacctatcgcctgagtcaaactcccAtagataataGggcggtggaagcatgcagcgttccgtggctacattcAGaagcaggatgtgcgacgtgttcacagtaaacatagcgcctgcagaagttacagaatggagagaaggggtaagcagtatatatatatggcaacatatcctatgcacacaggccctcacatgtacacacgtgcacaccaactaaaaaatatcaccaaaaaatctagaaaaaatcatacacatactttcaaTtgtattacAcctagggttaaaatcttaacgtcaaattcattatattttagccgtaacaaaaaaaacaaaaaatctgacagttttaaggttgcaattttgtcagaattttatcttttttgttattctctatgtagaatgaatttaaagatgcgattttgcacgtagatgtaatactattgaaagtacatgtatgaattttcctagaattttttgtgataatttttagttggtgtacacagtgtgtacacgcgagtgcctgtgtgcataggatacGctccctatatatataatataggcactgtatatattatagtagtttaaaacaaGaaagaacgagatgaAGaaagaggaagcaggcgctatggggaaagccgtgaagagaagagaaagggaagctaaaatctttataggcagcttggggggggggggggggggggaacagcaggagaggaagctggaaagcagacgcgcaccgaccaccgtacgcaacggctacaaagcgaaacgcgccgaccgttagctccacagcagcccaccatatgagtgacacataaacacgagccagggaaccgaacgcgtgagcgcacggcattaaacacgaagactgcaaacagatacgcttgatctaacgcacacagcagaagcacAaaagcacaacaatcactaaaaacatggtgaacaatgcacggatccgctaacagagacagagatggaaaggAaggaagcgagaaataacctcggacgaagaggcccgcgaacgccgtgggacaacaaggacgaagcaagtacgagaggaggacaagacagagaagacacgaacgagtcgatccagaaagcgaaggaaagacaggagggtccgcactgaaacaaacaaagcaatgtaatcaggacatAtgaagcacaaaacataggcaagggatacataggggcctgccatgcggacccaaagcacgagagggaaaacctaccgcgagctgccgccgcggaagacctttgctgtgctgatgAacaggttcaagaaccatggaagcagcgatccacgccgtgcaaatcccggcccctacgaatgaacacaacagacaccaccgaacaatcagccAataagggataacaaaaacagaaagccgacacagccgcagAaaagcggagcgaccgcggagaggaacccgctgcaagccagcgccttactctgccatagcggatggaaccaaacgagaccaagcagcggcgaatcgaacgcggcagcacaggcagccaaaagggagcAaaaacgacggtgtaagcccTAGaaacgaagagcagg
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| CDS seq | atggttcttgaacctgtTcatcagcacagcaaaggtcttccgcggcggcagctcgcggtagtgcggaccctcctgtctttccttcgctttctggatcgactcgttcgtgtcttctctgtcttgtcctcctctcgtacttgcttcgtccttgttgtcccacggcgttcgcgggcctcttcgtccgagccacggaacgctgcatgcttccaccgccCtattatctaTgggagtttgactcaggcgataggttgtTggctggaattgagcttgtctTcccagcatatgcagccccagcttacctgtgaccctctccagagcgtgcacgagcctgcagccatggaggctgtcaggtacctgcagcggcgatatggttttcttgtgcgcgactataatttccaatctatgttagcatatagaacgatagcaaagtgtgctgttgagactgcgtTgttggcttgtgggtgtatcacgcgatatagatcgtgctgctcacacacgcctccacgttgtgatgatatcattcagtcgtgtgCttcgctgtggtttaatctttatATtgaggatggtgatcactctgctcatgtgtag
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| Protein seq | MVLEPVHQHSKGLPRRQLAVVRTLLSFLRFLDRLVRVFSVLSSSRTCFVLVVPRRSRASSSEPRNAACFHRPIIYGSLTQAIGCWLELSLSSQHMQPQLTCDPLQSVHEPAAMEAVRYLQRRYGFLVRDYNFQSMLAYRTIAKCAVETALLACGCITRYRSCCSHTPPRCDDIIQSCASLWFNLYIEDGDHSAHV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_06g0013670 | OsLaMu_06g0013670.01 | Chr06 | 13381646 | 13383430 | - | NAM | ||
| CDS seq | atggttcttgaacctgtTcatcagcacagcaaaggtcttccgcggcggcagctcgcggtagtgcggaccctcctgtctttccttcgctttctggatcgactcgttcgtgtcttctctgtcttgtcctcctctcgtacttgcttcgtccttgttgtcccacggcgttcgcgggcctcttcgtccgagccacggaacgctgcatgcttccaccgccCtattatctaTgggagtttgactcaggcgataggttgtTggctggaattgagcttgtctTcccagcatatgcagccccagcttacctgtgaccctctccagagcgtgcacgagcctgcagccatggaggctgtcaggtacctgcagcggcgatatggttttcttgtgcgcgactataatttccaatctatgttagcatatagaacgatagcaaagtgtgctgttgagactgcgtTgttggcttgtgggtgtatcacgcgatatagatcgtgctgctcacacacgcctccacgttgtgatgatatcattcagtcgtgtgCttcgctgtggtttaatctttatATtgaggatggtgatcactctgctcatgtgtag
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| Protein seq | MVLEPVHQHSKGLPRRQLAVVRTLLSFLRFLDRLVRVFSVLSSSRTCFVLVVPRRSRASSSEPRNAACFHRPIIYGSLTQAIGCWLELSLSSQHMQPQLTCDPLQSVHEPAAMEAVRYLQRRYGFLVRDYNFQSMLAYRTIAKCAVETALLACGCITRYRSCCSHTPPRCDDIIQSCASLWFNLYIEDGDHSAHV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_06g0013670 | OsLaMu_06g0013670.02 | Chr06 | 13381644 | 13383673 | - | IsoSeq | ||
| CDS seq | tgctcttcgtttCTAgggcttacaccgtcgttttTgctcccttttggctgcctgtgctgccgcgttcgattcgccgctgcttggtctcgtttggttccatccgctatggcagagggccgggatttgcacggcgtggatcgctgcttccatggt |
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| Protein seq | CSSFLGLTPSFLLPFGCLCCRVRFAAAWSRLVPSAMAEGRDLHGVDRCFHG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr06 | 13382171 | 13383107 | - | OsLaMu_06g0013670.02 | OsLaMu_06g0013670.01,OsLaMu_06g0013670.02 | All |
| A5 | Chr06 | 13383231 | 13383339 | - | OsLaMu_06g0013670.01 | OsLaMu_06g0013670.01,OsLaMu_06g0013670.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.129598 | 6.216470 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0013840 | RBH | 0.0 | 15.964598 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0013790 | RBH | 2.939222 | 29.025518 | 2.027359 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0013770 | RBH | 0.0 | 0.569322 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0013870 | RBH | 2.323026 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0013370 | RBH | 0.422019 | 0.667541 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0013890 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0013820 | RBH | 0.591503 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0013540 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
